Rroxscaffold_4G00322210

carboxylesterase 15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000918
Physical Location & Seq
Forward (+)
52378503 .. 52378793
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00322210.1

Sequence Viewer

Length: 291 bp
ATGGACAGGACTCCCGAGTTCACTTTCCTATTTCGGTCGGTTTCACCTCACGACGAATTCATCAAAGGCGTTGCCACAAAAGACGTGGTCATTGACAAAACATCCGGCCATCGCGTCCGAATATACCTACCGGAGAGAAAGCCGGAGGACAATGACGAGACTAAGCTACCCATAATCCTTCATTTCCACGGAGGGGCTTTTGCATTTCCGAAGCCGATTGGTACATGTACTACTACATCTACTCCAAGATCGCACGCGCGGCCAACGCTATTGTTGTCTCCGTCTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

96

Amino Acids

10.79

Weight (kDa)

8.93

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 114, 257, 259
AciI CCGC 1 cut(s) 259
AcoI YGGCCR 2 cut(s) 106, 260
AcsI RAATTY 1 cut(s) 56
AfaI GTAC 2 cut(s) 223, 229
AfiI CCNNNNNNNGG 1 cut(s) 193
AflIII ACRYGT 1 cut(s) 224
AjiI CACGTC 1 cut(s) 85
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
Alw26I GTCTC 2 cut(s) 152, 282
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 2 cut(s) 106, 260
ApoI RAATTY 1 cut(s) 56
AspLEI GCGC 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 36
AvaI CYCGRG 1 cut(s) 14
BccI CCATC 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 152, 282
BisI GCNGC 1 cut(s) 260
BlsI GCNGC 1 cut(s) 261
BmeT110I CYCGRG 1 cut(s) 14
BmgBI CACGTC 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 187
BsaWI WCCGGW 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
Bsc4I CCNNNNNNNGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 193
Bsh1236I CGCG 3 cut(s) 114, 257, 259
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 2 cut(s) 108, 262
BsiEI CGRYCG 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 3 cut(s) 105, 131, 143
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 2 cut(s) 152, 282
BsnI GGCC 2 cut(s) 108, 262
BsoBI CYCGRG 1 cut(s) 14
Bsp143I GATC 1 cut(s) 248
BspACI CCGC 1 cut(s) 259
BspANI GGCC 2 cut(s) 108, 262
BspFNI CGCG 3 cut(s) 114, 257, 259
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 162
BstDSI CCRYGG 1 cut(s) 187
BstF5I GGATG 1 cut(s) 101
BstFNI CGCG 3 cut(s) 114, 257, 259
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 1 cut(s) 251
BstMAI GTCTC 2 cut(s) 152, 282
BstMBI GATC 1 cut(s) 248
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 2 cut(s) 259, 265
BstNSI RCATGY 1 cut(s) 228
BstUI CGCG 3 cut(s) 114, 257, 259
BsuRI GGCC 2 cut(s) 108, 262
BtgI CCRYGG 1 cut(s) 187
BtgZI GCGATG 1 cut(s) 95
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 255
CfoI GCGC 1 cut(s) 259
CseI GACGC 1 cut(s) 103
Csp6I GTAC 2 cut(s) 222, 228
CspCI CAANNNNNGTGG 2 cut(s) 66, 101
CviAII CATG 1 cut(s) 225
CviJI RGCY 6 cut(s) 108, 142, 166, 197, 214, 262
CviKI_1 RGCY 6 cut(s) 108, 142, 166, 197, 214, 262
CviQI GTAC 2 cut(s) 222, 228
DdeI CTNAG 1 cut(s) 162
DpnI GATC 1 cut(s) 250
DpnII GATC 1 cut(s) 248
EaeI YGGCCR 2 cut(s) 106, 260
Eco88I CYCGRG 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 56
FaeI CATG 1 cut(s) 228
FaiI YATR 3 cut(s) 124, 173, 226
FatI CATG 1 cut(s) 224
Fnu4HI GCNGC 1 cut(s) 260
FokI GGATG 1 cut(s) 88
Fsp4HI GCNGC 1 cut(s) 260
GlaI GCGC 1 cut(s) 258
GluI GCNGC 1 cut(s) 260
HaeIII GGCC 2 cut(s) 108, 262
HapII CCGG 3 cut(s) 105, 131, 143
HgaI GACGC 1 cut(s) 103
HhaI GCGC 1 cut(s) 259
Hin1II CATG 1 cut(s) 228
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HinfI GANTC 1 cut(s) 10
HpaII CCGG 3 cut(s) 105, 131, 143
HphI GGTGA 1 cut(s) 36
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 2 cut(s) 119, 210
Hpy188III TCNNGA 2 cut(s) 14, 50
Hpy8I GTNNAC 1 cut(s) 21
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 188
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 2 cut(s) 259, 265
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 1 cut(s) 228
HspAI GCGC 1 cut(s) 257
Kzo9I GATC 1 cut(s) 248
LpnPI CCDG 3 cut(s) 118, 144, 156
MaeII ACGT 1 cut(s) 84
MalI GATC 1 cut(s) 250
MboI GATC 1 cut(s) 248
MluCI AATT 1 cut(s) 56
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 3 cut(s) 57, 139, 185
MspI CCGG 3 cut(s) 105, 131, 143
MvnI CGCG 3 cut(s) 114, 257, 259
MwoI GCNNNNNNNGC 2 cut(s) 259, 265
NdeII GATC 1 cut(s) 248
NlaIII CATG 1 cut(s) 228
NspI RCATGY 1 cut(s) 228
PciI ACATGT 1 cut(s) 224
PflFI GACNNNGTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 261
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
PscI ACATGT 1 cut(s) 224
PsyI GACNNNGTC 1 cut(s) 86
RsaI GTAC 2 cut(s) 223, 229
RsaNI GTAC 2 cut(s) 222, 228
SatI GCNGC 1 cut(s) 260
Sau3AI GATC 1 cut(s) 248
SchI GAGTC 1 cut(s) 4
SetI ASST 4 cut(s) 49, 87, 129, 168
Sse9I AATT 1 cut(s) 56
SsiI CCGC 1 cut(s) 259
TaiI ACGT 1 cut(s) 87
TaqII GACCGA 1 cut(s) 24
TasI AATT 1 cut(s) 56
TatI WGTACW 1 cut(s) 227
TauI GCSGC 1 cut(s) 262
TspDTI ATGAA 2 cut(s) 49, 170
TspGWI ACGGA 2 cut(s) 204, 270
Tth111I GACNNNGTC 1 cut(s) 86
XapI RAATTY 1 cut(s) 56
XceI RCATGY 1 cut(s) 228
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.