Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000918

Physical Location & Seq

Genomic Coordinates Reverse (-)

11675050 .. 11675394

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0071600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCGATCCCAAAACCTAGCCGCCTGTGCTCGGTGCTCCAAACATGGCGATCACTGCCGGTCTCCATTCTAAGTGGAGAAATCTGCTCCACCCCCCACAATCCAATCTCATCCCTCCAACGCTGGCTTTCCCCGGCGACCACCCAACAGAATCAAGGTTCTGAAACTTTCGGGGTTTCTGATCCTTGCCGAATTGAGTTCGATCCAAACCGTGGCGGACCTCTAGGGGTGAGCTTCGTGCGCTTTCCTCAAATTCTGGGATCTGAGGAAGTTGGTGAAATCGGTGATTCATCACCAAAGCAAGCCTGTAGTGGACGACGAGCTTGGTCGGACTCGACCGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

114

Amino Acids

12.29

Weight (kDa)

6.55

Isoelectric Point (pI)

80.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04030 FvH4_7g04040 FvH4_7g04070
malus_domestica	MD02G1275500.v1.1 MD02G1275600.v1.1 MD02G1275900.v1.1 MD02G1276300.v1.1 MD02G1276600.v1.1 MD07G1043400.v1.1
prunus_persica	Prupe.2G044700_v2.0.a1 Prupe.2G045000_v2.0.a1 Prupe.2G045300_v2.0.a1
pyrus_communis	pycom02g23560 pycom02g23580 pycom07g03080
rosa_chinensis	RchiOBHm_Chr1g0327821 RchiOBHm_Chr1g0327831 RchiOBHm_Chr1g0327841 RchiOBHm_Chr1g0327851 RchiOBHm_Chr1g0327881 RchiOBHm_Chr1g0327901
rosa_laevigata	RLG00000029959 RLG00000029962 RLG00000029966 RLG00000029967
rosa_multiflora	Rmu_co8316237.1_g000001 Rmu_sc0005527.1_g000004 Rmu_sc0005693.1_g000003 Rmu_sc0005693.1_g000016 Rmu_sc0005693.1_g000026
rosa_roxburghii	Rroxscaffold_4G00322160 Rroxscaffold_4G00322190 Rroxscaffold_4G00322210 Rroxscaffold_4G00322290 Rroxscaffold_4G00322300
rosa_rugosa	Rorug01G0071200 Rorug01G0071300 Rorug01G0071400 Rorug01G0071600 Rorug01G0072300 Rorug06G0427900 Rorug06G0427900
rosa_samantha	Rh1AG077600 Rh1AG087500 Rh1AG087600 Rh1AG087700 Rh1AG087900 Rh1AG088100 Rh1BG070600 Rh1BG070700 Rh1BG070900 Rh1CG085500 Rh1CG086200 Rh1CG086400 Rh1DG091900 Rh1DG092100 Rh1DG092200 Rh1DG092400 Rh1DG092600 Rh1DG092800 Rh7BG026600
rosa_wichuraiana	Rw1G006820 Rw1G006830 Rw1G006840 Rw1G006870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	212
AccII	CGCG	1 cut(s)	341
AciI	CCGC	3 cut(s)	22, 216, 339
AclWI	GGATC	3 cut(s)	176, 197, 268
AcsI	RAATTY	1 cut(s)	252
AfiI	CCNNNNNNNGG	2 cut(s)	31, 212
AluBI	AGCT	2 cut(s)	234, 323
AluI	AGCT	2 cut(s)	234, 323
Alw21I	GWGCWC	2 cut(s)	32, 39
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	3 cut(s)	176, 197, 268
ApoI	RAATTY	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	218
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	4 cut(s)	241, 285, 287, 296
AvaII	GGWCC	1 cut(s)	218
Bbv12I	GWGCWC	2 cut(s)	32, 39
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	2 cut(s)	18, 224
BfmI	CTRYAG	1 cut(s)	307
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	132, 211
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 212
Bse118I	RCCGGY	1 cut(s)	58
BseDI	CCNNGG	2 cut(s)	132, 211
BseGI	GGATG	1 cut(s)	110
BseLI	CCNNNNNNNGG	2 cut(s)	31, 212
BseMII	CTCAG	1 cut(s)	255
Bsh1236I	CGCG	1 cut(s)	341
Bsh1285I	CGRYCG	1 cut(s)	339
BsiEI	CGRYCG	1 cut(s)	339
BsiHKAI	GWGCWC	2 cut(s)	32, 39
BsiSI	CCGG	2 cut(s)	59, 134
BslI	CCNNNNNNNGG	2 cut(s)	31, 212
BsmAI	GTCTC	1 cut(s)	67
Bso31I	GGTCTC	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	32, 39
Bsp143I	GATC	5 cut(s)	6, 50, 181, 202, 260
BspACI	CCGC	3 cut(s)	22, 216, 339
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	1 cut(s)	341
BspPI	GGATC	3 cut(s)	176, 197, 268
BspTNI	GGTCTC	1 cut(s)	67
BsrFI	RCCGGY	1 cut(s)	58
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	2 cut(s)	132, 211
BssMI	GATC	5 cut(s)	6, 50, 181, 202, 260
Bst4CI	ACNGT	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	125, 303
BstDEI	CTNAG	2 cut(s)	71, 264
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	110
BstFNI	CGCG	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	5 cut(s)	9, 53, 184, 205, 263
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	5 cut(s)	6, 50, 181, 202, 260
BstMCI	CGRYCG	1 cut(s)	339
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 55, 240
BstSCI	CCNGG	1 cut(s)	132
BstSFI	CTRYAG	1 cut(s)	307
BstUI	CGCG	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BtgI	CCRYGG	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	110
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	53
Cac8I	GCNNGC	2 cut(s)	125, 303
CfoI	GCGC	1 cut(s)	243
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	218
CviAII	CATG	1 cut(s)	45
CviJI	RGCY	5 cut(s)	21, 127, 234, 305, 323
CviKI_1	RGCY	5 cut(s)	21, 127, 234, 305, 323
DdeI	CTNAG	2 cut(s)	71, 264
DpnI	GATC	5 cut(s)	8, 52, 183, 204, 262
DpnII	GATC	5 cut(s)	6, 50, 181, 202, 260
EciI	GGCGGA	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	218
FaeI	CATG	1 cut(s)	48
FaiI	YATR	1 cut(s)	46
FatI	CATG	1 cut(s)	44
Fnu4HI	GCNGC	1 cut(s)	22
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	22
FspBI	CTAG	2 cut(s)	18, 224
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	1 cut(s)	22
HapII	CCGG	2 cut(s)	59, 134
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	1 cut(s)	48
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HinfI	GANTC	3 cut(s)	151, 287, 332
HpaII	CCGG	2 cut(s)	59, 134
HphI	GGTGA	4 cut(s)	241, 285, 287, 296
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	4 cut(s)	163, 181, 265, 331
Hpy8I	GTNNAC	1 cut(s)	314
Hpy99I	CGWCG	1 cut(s)	321
HpyCH4III	ACNGT	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 55, 240
HpyF3I	CTNAG	2 cut(s)	71, 264
Hsp92II	CATG	1 cut(s)	48
HspAI	GCGC	1 cut(s)	241
Kzo9I	GATC	5 cut(s)	6, 50, 181, 202, 260
LmnI	GCTCC	2 cut(s)	42, 92
LpnPI	CCDG	6 cut(s)	38, 72, 109, 147, 242, 319
MaeI	CTAG	2 cut(s)	18, 224
MalI	GATC	5 cut(s)	8, 52, 183, 204, 262
MboI	GATC	5 cut(s)	6, 50, 181, 202, 260
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	2 cut(s)	32, 39
MluCI	AATT	2 cut(s)	192, 252
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	2 cut(s)	142, 309
MnlI	CCTC	4 cut(s)	125, 231, 258, 259
MspI	CCGG	2 cut(s)	59, 134
MspR9I	CCNGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	3 cut(s)	27, 55, 240
NciI	CCSGG	1 cut(s)	134
NdeII	GATC	5 cut(s)	6, 50, 181, 202, 260
NlaIII	CATG	1 cut(s)	48
PfeI	GAWTC	2 cut(s)	151, 287
PflMI	CCANNNNNTGG	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	23
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
PspPI	GGNCC	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	260
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	5 cut(s)	6, 50, 181, 202, 260
Sau96I	GGNCC	1 cut(s)	218
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	1 cut(s)	134
SduI	GDGCHC	2 cut(s)	32, 39
SetI	ASST	5 cut(s)	19, 160, 223, 236, 325
SfcI	CTRYAG	1 cut(s)	307
SinI	GGWCC	1 cut(s)	218
Sse9I	AATT	2 cut(s)	192, 252
SsiI	CCGC	3 cut(s)	22, 216, 339
SspMI	CTAG	2 cut(s)	18, 224
StyD4I	CCNGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	212
TaqI	TCGA	2 cut(s)	201, 335
TasI	AATT	2 cut(s)	192, 252
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	2 cut(s)	151, 287
TscAI	CASTG	1 cut(s)	60
TspDTI	ATGAA	1 cut(s)	279
TspRI	CASTG	1 cut(s)	60
Van91I	CCANNNNNTGG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	1 cut(s)	252
XspI	CTAG	2 cut(s)	18, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.