Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000918

Physical Location & Seq

Genomic Coordinates Reverse (-)

17293805 .. 17303370

Gene Structure 9566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG092200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTTCAGGGACACCAAGGCTGACAGAAAAGATCGACTGAGTCGACACTCGACAGTGTTATCAACCATGGTCCATGAGAAGAAGCTGGTCTTGAAAGTATCCGATTGGCTTAGAGTCTATGACGACGGCTCTGTCGACCGGACATGGAGAGGACCTCCTCAGATCAGTTACTTATTGGAGCCTGTTCCACCTCACCAGGAATTCATTAACGGAGTTGCCACCAAAGATGTGGTTATTGACAACACGTCCGGCCATCGTGTCCGAATATATCTACCGGAGAGAAAGCCAGATGATAACAACGAGACTAAGCTACCCATAATCCTTCATTTCCATGGAGGGGGCTTTTGCTTTTGCGAAGCGGATTGGTACATGTACTACCATATCTACACCAAAATTGCACGTGCGGCCAACGCCATTGTTGTCTCCCCCTATCTAAGACAAGCACCCGAGCACCGCCTCCCAGCTCAGATGGAGGACGGCTTTTCTGCTCTCCTCTGGCTCAATCTGATTCACATGAACCGTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

175

Amino Acids

20.34

Weight (kDa)

8.52

Isoelectric Point (pI)

35.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_3	PF07859	107 - 168	1e-16	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04030 FvH4_7g04040 FvH4_7g04070
malus_domestica	MD02G1275500.v1.1 MD02G1275600.v1.1 MD02G1275900.v1.1 MD02G1276300.v1.1 MD02G1276600.v1.1 MD07G1043400.v1.1
prunus_persica	Prupe.2G044700_v2.0.a1 Prupe.2G045000_v2.0.a1 Prupe.2G045300_v2.0.a1
pyrus_communis	pycom02g23560 pycom02g23580 pycom07g03080
rosa_chinensis	RchiOBHm_Chr1g0327821 RchiOBHm_Chr1g0327831 RchiOBHm_Chr1g0327841 RchiOBHm_Chr1g0327851 RchiOBHm_Chr1g0327881 RchiOBHm_Chr1g0327901
rosa_laevigata	RLG00000029959 RLG00000029962 RLG00000029966 RLG00000029967
rosa_multiflora	Rmu_co8316237.1_g000001 Rmu_sc0005527.1_g000004 Rmu_sc0005693.1_g000003 Rmu_sc0005693.1_g000016 Rmu_sc0005693.1_g000026
rosa_roxburghii	Rroxscaffold_4G00322160 Rroxscaffold_4G00322190 Rroxscaffold_4G00322210 Rroxscaffold_4G00322290 Rroxscaffold_4G00322300
rosa_rugosa	Rorug01G0071200 Rorug01G0071300 Rorug01G0071400 Rorug01G0071600 Rorug01G0072300 Rorug06G0427900 Rorug06G0427900
rosa_samantha	Rh1AG077600 Rh1AG087500 Rh1AG087600 Rh1AG087700 Rh1AG087900 Rh1AG088100 Rh1BG070600 Rh1BG070700 Rh1BG070900 Rh1CG085500 Rh1CG086200 Rh1CG086400 Rh1DG091900 Rh1DG092100 Rh1DG092200 Rh1DG092400 Rh1DG092600 Rh1DG092800 Rh7BG026600
rosa_wichuraiana	Rw1G006820 Rw1G006830 Rw1G006840 Rw1G006870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
AccI	GTMKAC	2 cut(s)	43, 135
AciI	CCGC	3 cut(s)	359, 404, 454
AcoI	YGGCCR	2 cut(s)	250, 405
AcsI	RAATTY	1 cut(s)	200
AcvI	CACGTG	1 cut(s)	401
AfaI	GTAC	2 cut(s)	368, 374
AfiI	CCNNNNNNNGG	1 cut(s)	337
AflIII	ACRYGT	2 cut(s)	243, 369
AgsI	TTSAA	1 cut(s)	94
AhdI	GACNNNNNGTC	1 cut(s)	244
AjiI	CACGTC	1 cut(s)	246
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	3 cut(s)	85, 310, 464
AluI	AGCT	3 cut(s)	85, 310, 464
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	2 cut(s)	296, 427
Ama87I	CYCGRG	1 cut(s)	446
AoxI	GGCC	2 cut(s)	250, 405
ApoI	RAATTY	1 cut(s)	200
AspS9I	GGNCC	2 cut(s)	70, 152
AsuHPI	GGTGA	1 cut(s)	185
AvaI	CYCGRG	1 cut(s)	446
AvaII	GGWCC	2 cut(s)	70, 152
BbrPI	CACGTG	1 cut(s)	401
Bbv12I	GWGCWC	1 cut(s)	453
BccI	CCATC	2 cut(s)	261, 463
BceAI	ACGGC	2 cut(s)	142, 493
BciT130I	CCWGG	1 cut(s)	197
BciVI	GTATCC	1 cut(s)	109
BcoDI	GTCTC	2 cut(s)	296, 427
BfuI	GTATCC	1 cut(s)	109
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	2 cut(s)	70, 152
BmeRI	GACNNNNNGTC	1 cut(s)	244
BmeT110I	CYCGRG	1 cut(s)	446
BmgBI	CACGTC	1 cut(s)	246
BmgT120I	GGNCC	2 cut(s)	70, 152
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	1 cut(s)	197
BplI	GAGNNNNNCTC	2 cut(s)	139, 171
BsaAI	YACGTR	1 cut(s)	401
BsaJI	CCNNGG	4 cut(s)	15, 66, 331, 520
BsaWI	WCCGGW	2 cut(s)	138, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	4 cut(s)	15, 66, 331, 520
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMII	CTCAG	3 cut(s)	29, 173, 479
BseRI	GAGGAG	2 cut(s)	147, 482
BseYI	CCCAGC	1 cut(s)	460
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	2 cut(s)	252, 407
BsiEI	CGRYCG	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	453
BsiHKCI	CYCGRG	1 cut(s)	446
BsiSI	CCGG	3 cut(s)	139, 249, 275
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmAI	GTCTC	2 cut(s)	296, 427
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	2 cut(s)	252, 407
BsoBI	CYCGRG	1 cut(s)	446
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	2 cut(s)	31, 162
Bsp19I	CCATGG	2 cut(s)	66, 331
BspACI	CCGC	3 cut(s)	359, 404, 454
BspANI	GGCC	2 cut(s)	252, 407
BspCNI	CTCAG	3 cut(s)	30, 172, 478
BspLI	GGNNCC	1 cut(s)	180
BssECI	CCNNGG	4 cut(s)	15, 66, 331, 520
BssMI	GATC	2 cut(s)	31, 162
BssT1I	CCWWGG	3 cut(s)	15, 66, 331
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	2 cut(s)	55, 521
BstBAI	YACGTR	1 cut(s)	401
BstDEI	CTNAG	6 cut(s)	38, 110, 159, 306, 434, 465
BstDSI	CCRYGG	3 cut(s)	66, 331, 520
BstKTI	GATC	2 cut(s)	34, 165
BstMAI	GTCTC	2 cut(s)	296, 427
BstMBI	GATC	2 cut(s)	31, 162
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 410
BstNI	CCWGG	1 cut(s)	197
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	195
BstXI	CCANNNNNNTGG	1 cut(s)	229
BsuI	GTATCC	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	252, 407
BtgI	CCRYGG	3 cut(s)	66, 331, 520
BtrI	CACGTC	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	60
Cfr13I	GGNCC	2 cut(s)	70, 152
Csp6I	GTAC	2 cut(s)	367, 373
CviAII	CATG	6 cut(s)	67, 74, 144, 332, 370, 514
CviQI	GTAC	2 cut(s)	367, 373
DdeI	CTNAG	6 cut(s)	38, 110, 159, 306, 434, 465
DpnI	GATC	2 cut(s)	33, 164
DpnII	GATC	2 cut(s)	31, 162
DrdI	GACNNNNNNGTC	1 cut(s)	131
DriI	GACNNNNNGTC	1 cut(s)	244
DseDI	GACNNNNNNGTC	1 cut(s)	131
EaeI	YGGCCR	2 cut(s)	250, 405
Eam1105I	GACNNNNNGTC	1 cut(s)	244
Eco130I	CCWWGG	3 cut(s)	15, 66, 331
Eco47I	GGWCC	2 cut(s)	70, 152
Eco72I	CACGTG	1 cut(s)	401
Eco88I	CYCGRG	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	195
EcoT14I	CCWWGG	3 cut(s)	15, 66, 331
ErhI	CCWWGG	3 cut(s)	15, 66, 331
FaeI	CATG	6 cut(s)	70, 77, 147, 335, 373, 517
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	6 cut(s)	66, 73, 143, 331, 369, 513
FblI	GTMKAC	2 cut(s)	43, 135
Fnu4HI	GCNGC	1 cut(s)	405
Fsp4HI	GCNGC	1 cut(s)	405
GluI	GCNGC	1 cut(s)	405
GsaI	CCCAGC	1 cut(s)	464
HaeIII	GGCC	2 cut(s)	252, 407
HapII	CCGG	3 cut(s)	139, 249, 275
Hin1II	CATG	6 cut(s)	70, 77, 147, 335, 373, 517
HincII	GTYRAC	2 cut(s)	44, 136
HindII	GTYRAC	2 cut(s)	44, 136
HinfI	GANTC	3 cut(s)	40, 114, 508
HpaII	CCGG	3 cut(s)	139, 249, 275
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	2 cut(s)	44, 136
Hpy188I	TCNGA	5 cut(s)	103, 162, 263, 468, 507
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	2 cut(s)	44, 136
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	332
HpyCH4III	ACNGT	2 cut(s)	55, 521
HpyCH4IV	ACGT	2 cut(s)	245, 400
HpyCH4V	TGCA	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 410
HpyF3I	CTNAG	6 cut(s)	38, 110, 159, 306, 434, 465
HpySE526I	ACGT	2 cut(s)	245, 400
Hsp92II	CATG	6 cut(s)	70, 77, 147, 335, 373, 517
Kzo9I	GATC	2 cut(s)	31, 162
LmnI	GCTCC	1 cut(s)	178
MaeII	ACGT	2 cut(s)	245, 400
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	2 cut(s)	33, 164
MboI	GATC	2 cut(s)	31, 162
MboII	GAAGA	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	2 cut(s)	200, 393
MlyI	GAGTC	2 cut(s)	49, 123
MnlI	CCTC	8 cut(s)	143, 165, 168, 201, 329, 466, 467, 503
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	330
MspI	CCGG	3 cut(s)	139, 249, 275
MspR9I	CCNGG	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	404, 410
NcoI	CCATGG	2 cut(s)	66, 331
NdeII	GATC	2 cut(s)	31, 162
NlaIII	CATG	6 cut(s)	70, 77, 147, 335, 373, 517
NlaIV	GGNNCC	1 cut(s)	180
NspI	RCATGY	1 cut(s)	373
PciI	ACATGT	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	2 cut(s)	40, 132
PfeI	GAWTC	1 cut(s)	508
PflFI	GACNNNGTC	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	406
PleI	GAGTC	2 cut(s)	48, 122
PmaCI	CACGTG	1 cut(s)	401
PmlI	CACGTG	1 cut(s)	401
PpsI	GAGTC	2 cut(s)	48, 122
Ppu21I	YACGTR	1 cut(s)	401
PpuMI	RGGWCCY	1 cut(s)	152
PscI	ACATGT	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	195
PspCI	CACGTG	1 cut(s)	401
PspFI	CCCAGC	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	2 cut(s)	70, 152
PspPPI	RGGWCCY	1 cut(s)	152
PsyI	GACNNNGTC	1 cut(s)	39
RsaI	GTAC	2 cut(s)	368, 374
RsaNI	GTAC	2 cut(s)	367, 373
RseI	CAYNNNNRTG	1 cut(s)	330
SalI	GTCGAC	2 cut(s)	42, 134
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	2 cut(s)	31, 162
Sau96I	GGNCC	2 cut(s)	70, 152
SchI	GAGTC	2 cut(s)	49, 123
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	453
SetI	ASST	7 cut(s)	87, 157, 193, 248, 312, 403, 466
SinI	GGWCC	2 cut(s)	70, 152
SmiMI	CAYNNNNRTG	1 cut(s)	330
Sse9I	AATT	2 cut(s)	200, 393
SsiI	CCGC	3 cut(s)	359, 404, 454
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	3 cut(s)	15, 66, 331
TaaI	ACNGT	2 cut(s)	55, 521
TaiI	ACGT	2 cut(s)	248, 403
TaqI	TCGA	4 cut(s)	34, 43, 50, 135
TasI	AATT	2 cut(s)	200, 393
TatI	WGTACW	1 cut(s)	372
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	1 cut(s)	508
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	60
TspDTI	ATGAA	2 cut(s)	193, 314
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	60
Tth111I	GACNNNGTC	1 cut(s)	39
VpaK11BI	GGWCC	2 cut(s)	70, 152
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	1 cut(s)	373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XmiI	GTMKAC	2 cut(s)	43, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.