Rroxscaffold_4G00322290

carboxylesterase 15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000918
Physical Location & Seq
Forward (+)
52468193 .. 52468384
192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00322290.1

Sequence Viewer

Length: 192 bp
ATGGCGGACAAGTTATTCAGCTTGTCACTTCCGTGGATCAACCAAGGACCACCCGATTACGTGTACGATGGGTTCATTGGCCCCGCCTTTAGATGGTGCGAAGCTGCCTCGATGCTTGTTTTCGTTGGGGAGATCGACGTCTTTAAGGACACTCGGGTGGAATACTATGAGGCCATGAAGAAGGCTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

63

Amino Acids

7.24

Weight (kDa)

4.56

Isoelectric Point (pI)

22.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
AciI CCGC 2 cut(s) 5, 84
AclWI GGATC 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 93
AflIII ACRYGT 1 cut(s) 60
AleI CACNNNNGTG 2 cut(s) 31, 155
AluBI AGCT 2 cut(s) 21, 104
AluI AGCT 2 cut(s) 21, 104
AlwI GGATC 1 cut(s) 44
Ama87I CYCGRG 1 cut(s) 153
AoxI GGCC 2 cut(s) 79, 171
ApeKI GCWGC 1 cut(s) 104
AspS9I GGNCC 2 cut(s) 47, 80
AvaI CYCGRG 1 cut(s) 153
AvaII GGWCC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 91
BccI CCATC 2 cut(s) 62, 87
BfaI CTAG 1 cut(s) 190
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 47
BmeT110I CYCGRG 1 cut(s) 153
BmgT120I GGNCC 2 cut(s) 47, 80
BmiI GGNNCC 1 cut(s) 82
BmsI GCATC 1 cut(s) 102
BsaAI YACGTR 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 32, 43
Bsc4I CCNNNNNNNGG 1 cut(s) 93
BseDI CCNNGG 2 cut(s) 32, 43
BseLI CCNNNNNNNGG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 91
BshFI GGCC 2 cut(s) 81, 173
BsiHKCI CYCGRG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 93
BsnI GGCC 2 cut(s) 81, 173
BsoBI CYCGRG 1 cut(s) 153
Bsp143I GATC 2 cut(s) 36, 132
BspACI CCGC 2 cut(s) 5, 84
BspANI GGCC 2 cut(s) 81, 173
BspLI GGNNCC 1 cut(s) 82
BspPI GGATC 1 cut(s) 44
BssECI CCNNGG 2 cut(s) 32, 43
BssMI GATC 2 cut(s) 36, 132
BssNI GRCGYC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 138
BstBAI YACGTR 1 cut(s) 61
BstDSI CCRYGG 1 cut(s) 32
BstKTI GATC 2 cut(s) 39, 135
BstMBI GATC 2 cut(s) 36, 132
BstV1I GCAGC 1 cut(s) 91
BsuRI GGCC 2 cut(s) 81, 173
BtgI CCRYGG 1 cut(s) 32
Cfr13I GGNCC 2 cut(s) 47, 80
Csp6I GTAC 1 cut(s) 64
CviAII CATG 1 cut(s) 175
CviJI RGCY 5 cut(s) 21, 81, 104, 173, 185
CviKI_1 RGCY 5 cut(s) 21, 81, 104, 173, 185
CviQI GTAC 1 cut(s) 64
DpnI GATC 2 cut(s) 38, 134
DpnII GATC 2 cut(s) 36, 132
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 47
Eco88I CYCGRG 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 1 cut(s) 178
FaiI YATR 2 cut(s) 168, 176
FatI CATG 1 cut(s) 174
FauI CCCGC 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 1 cut(s) 190
GluI GCNGC 1 cut(s) 105
HaeIII GGCC 2 cut(s) 81, 173
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 64
Hpy8I GTNNAC 1 cut(s) 64
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 175
HpyCH4IV ACGT 2 cut(s) 60, 138
HpySE526I ACGT 2 cut(s) 60, 138
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 1 cut(s) 178
Kzo9I GATC 2 cut(s) 36, 132
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 1 cut(s) 102
MaeI CTAG 1 cut(s) 190
MaeII ACGT 2 cut(s) 60, 138
MaeIII GTNAC 1 cut(s) 24
MalI GATC 2 cut(s) 38, 134
MboI GATC 2 cut(s) 36, 132
MboII GAAGA 1 cut(s) 190
MnlI CCTC 2 cut(s) 118, 163
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 2 cut(s) 31, 155
NdeII GATC 2 cut(s) 36, 132
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 24
OliI CACNNNNGTG 2 cut(s) 31, 155
PkrI GCNGC 1 cut(s) 106
Ppu21I YACGTR 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 2 cut(s) 47, 80
PsrI GAACNNNNNNTAC 2 cut(s) 56, 88
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 2 cut(s) 31, 155
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 2 cut(s) 36, 132
Sau96I GGNCC 2 cut(s) 47, 80
SetI ASST 4 cut(s) 23, 63, 106, 141
SfaNI GCATC 1 cut(s) 102
SinI GGWCC 1 cut(s) 47
SmiMI CAYNNNNRTG 2 cut(s) 31, 155
SsiI CCGC 2 cut(s) 5, 84
SspMI CTAG 1 cut(s) 190
StyI CCWWGG 1 cut(s) 43
TaiI ACGT 2 cut(s) 63, 141
TaqI TCGA 2 cut(s) 110, 135
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseFI GTSAC 1 cut(s) 24
TseI GCWGC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 24
TspDTI ATGAA 2 cut(s) 64, 191
TspGWI ACGGA 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 47
XspI CTAG 1 cut(s) 190
ZraI GACGTC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.