Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000918

Physical Location & Seq

Genomic Coordinates Forward (+)

13012298 .. 13012765

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG077600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGGGGAGGGATCCAGCAAGCAGTAGCCGGCAGCAGTCGGTTGGTCCGTCAATGCTCAGTGTTTGGTCTCGGCCAAACGAGGTGTTTTCCAAGTGGTGTTATCGAGCGCAGGGGAAGGCACGAACTAGAGGCTTTCCATTTGGATTGTTCCGATTGCAGAGTACGGTGGTTGTTTCTTGAGGTCGTCTTCTTAGATCTCTGTCGTCGGATCTCGAAGGAGGAAGGCTCGATCTGTTCGAAGGTTACTGGATTGGGATCTGGTTCTTCGGTTTCATCACTTGTTGGAGCGGTTTGCAGGGGTGCTCCAGGCCGAGTTTTGGCAAGTTTAGTGTTTCAGTTTTTGACGCCAGTGCCGGTTGGACATGGTCTGTGGACAGAGACGGCCGCCAAACAGGGCGGCGGTGCAGATGGTGGAGGCGACTCCTCTATTGGCTTGGGGTTGGGCCTGGGCTCATCATTAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

16.08

Weight (kDa)

8.83

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04030 FvH4_7g04040 FvH4_7g04070
malus_domestica	MD02G1275500.v1.1 MD02G1275600.v1.1 MD02G1275900.v1.1 MD02G1276300.v1.1 MD02G1276600.v1.1 MD07G1043400.v1.1
prunus_persica	Prupe.2G044700_v2.0.a1 Prupe.2G045000_v2.0.a1 Prupe.2G045300_v2.0.a1
pyrus_communis	pycom02g23560 pycom02g23580 pycom07g03080
rosa_chinensis	RchiOBHm_Chr1g0327821 RchiOBHm_Chr1g0327831 RchiOBHm_Chr1g0327841 RchiOBHm_Chr1g0327851 RchiOBHm_Chr1g0327881 RchiOBHm_Chr1g0327901
rosa_laevigata	RLG00000029959 RLG00000029962 RLG00000029966 RLG00000029967
rosa_multiflora	Rmu_co8316237.1_g000001 Rmu_sc0005527.1_g000004 Rmu_sc0005693.1_g000003 Rmu_sc0005693.1_g000016 Rmu_sc0005693.1_g000026
rosa_roxburghii	Rroxscaffold_4G00322160 Rroxscaffold_4G00322190 Rroxscaffold_4G00322210 Rroxscaffold_4G00322290 Rroxscaffold_4G00322300
rosa_rugosa	Rorug01G0071200 Rorug01G0071300 Rorug01G0071400 Rorug01G0071600 Rorug01G0072300 Rorug06G0427900 Rorug06G0427900
rosa_samantha	Rh1AG077600 Rh1AG087500 Rh1AG087600 Rh1AG087700 Rh1AG087900 Rh1AG088100 Rh1BG070600 Rh1BG070700 Rh1BG070900 Rh1CG085500 Rh1CG086200 Rh1CG086400 Rh1DG091900 Rh1DG092100 Rh1DG092200 Rh1DG092400 Rh1DG092600 Rh1DG092800 Rh7BG026600
rosa_wichuraiana	Rw1G006820 Rw1G006830 Rw1G006840 Rw1G006870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	290
AciI	CCGC	4 cut(s)	290, 387, 399, 402
AclWI	GGATC	4 cut(s)	7, 20, 218, 265
AcoI	YGGCCR	2 cut(s)	73, 384
AcyI	GRCGYC	1 cut(s)	347
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	319
AjnI	CCWGG	2 cut(s)	307, 447
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	2 cut(s)	74, 374
AlwI	GGATC	4 cut(s)	7, 20, 218, 265
AoxI	GGCC	4 cut(s)	73, 310, 384, 445
ApeKI	GCWGC	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	2 cut(s)	46, 445
AsuII	TTCGAA	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	46
BamHI	GGATCC	1 cut(s)	12
BanII	GRGCYC	1 cut(s)	455
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	307
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	1 cut(s)	399
BciT130I	CCWGG	2 cut(s)	309, 449
BcoDI	GTCTC	2 cut(s)	74, 374
BfaI	CTAG	1 cut(s)	128
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	3 cut(s)	34, 387, 400
BlsI	GCNGC	3 cut(s)	35, 388, 401
Bme1390I	CCNGG	2 cut(s)	309, 449
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	46, 445
BmiI	GGNNCC	1 cut(s)	14
BmrFI	CCNGG	2 cut(s)	309, 449
BpiI	GAAGAC	1 cut(s)	181
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpmI	CTGGAG	1 cut(s)	291
Bpu14I	TTCGAA	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	200
BsaBI	GATNNNNATC	1 cut(s)	256
BsaHI	GRCGYC	1 cut(s)	347
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse118I	RCCGGY	2 cut(s)	29, 355
Bse1I	ACTGG	2 cut(s)	253, 350
Bse8I	GATNNNNATC	1 cut(s)	256
BseBI	CCWGG	2 cut(s)	309, 449
BseDI	CCNNGG	1 cut(s)	448
BseJI	GATNNNNATC	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	2 cut(s)	253, 350
BseRI	GAGGAG	1 cut(s)	415
BseX3I	CGGCCG	1 cut(s)	384
BseXI	GCAGC	1 cut(s)	45
BsgI	GTGCAG	1 cut(s)	426
Bsh1285I	CGRYCG	1 cut(s)	387
BshFI	GGCC	4 cut(s)	75, 312, 386, 447
BsiEI	CGRYCG	1 cut(s)	387
BsiHKAI	GWGCWC	1 cut(s)	307
BsiSI	CCGG	2 cut(s)	30, 356
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	2 cut(s)	74, 374
BsmBI	CGTCTC	1 cut(s)	374
BsnI	GGCC	4 cut(s)	75, 312, 386, 447
Bso31I	GGTCTC	1 cut(s)	74
Bsp119I	TTCGAA	1 cut(s)	239
Bsp1286I	GDGCHC	2 cut(s)	307, 455
Bsp143I	GATC	5 cut(s)	12, 196, 210, 231, 257
BspACI	CCGC	4 cut(s)	290, 387, 399, 402
BspANI	GGCC	4 cut(s)	75, 312, 386, 447
BspCNI	CTCAG	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	14
BspPI	GGATC	4 cut(s)	7, 20, 218, 265
BspT104I	TTCGAA	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	74
BsrBI	CCGCTC	1 cut(s)	290
BsrFI	RCCGGY	2 cut(s)	29, 355
BsrI	ACTGG	2 cut(s)	253, 350
BssAI	RCCGGY	2 cut(s)	29, 355
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	5 cut(s)	12, 196, 210, 231, 257
BssNI	GRCGYC	1 cut(s)	347
Bst2UI	CCWGG	2 cut(s)	309, 449
Bst4CI	ACNGT	1 cut(s)	168
BstACI	GRCGYC	1 cut(s)	347
BstBI	TTCGAA	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	21, 31
BstDEI	CTNAG	2 cut(s)	58, 193
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	5 cut(s)	15, 199, 213, 234, 260
BstMAI	GTCTC	2 cut(s)	74, 374
BstMBI	GATC	5 cut(s)	12, 196, 210, 231, 257
BstMCI	CGRYCG	1 cut(s)	387
BstNI	CCWGG	2 cut(s)	309, 449
BstSCI	CCNGG	2 cut(s)	307, 447
BstV1I	GCAGC	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	181
BstX2I	RGATCY	4 cut(s)	12, 196, 210, 257
BstYI	RGATCY	4 cut(s)	12, 196, 210, 257
BstZI	CGGCCG	1 cut(s)	384
BsuRI	GGCC	4 cut(s)	75, 312, 386, 447
BtsIMutI	CAGTG	2 cut(s)	66, 357
Cac8I	GCNNGC	2 cut(s)	21, 31
CfoI	GCGC	1 cut(s)	111
Cfr10I	RCCGGY	2 cut(s)	29, 355
Cfr13I	GGNCC	2 cut(s)	46, 445
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	1 cut(s)	365
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	2 cut(s)	58, 193
DpnI	GATC	5 cut(s)	14, 198, 212, 233, 259
DpnII	GATC	5 cut(s)	12, 196, 210, 231, 257
EaeI	YGGCCR	2 cut(s)	73, 384
EagI	CGGCCG	1 cut(s)	384
EclXI	CGGCCG	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	455
Eco31I	GGTCTC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	46
Eco52I	CGGCCG	1 cut(s)	384
EcoRII	CCWGG	2 cut(s)	307, 447
EcoT38I	GRGCYC	1 cut(s)	455
Esp3I	CGTCTC	1 cut(s)	374
FaeI	CATG	1 cut(s)	368
FaiI	YATR	1 cut(s)	366
FatI	CATG	1 cut(s)	364
Fnu4HI	GCNGC	3 cut(s)	34, 387, 400
FriOI	GRGCYC	1 cut(s)	455
Fsp4HI	GCNGC	3 cut(s)	34, 387, 400
FspBI	CTAG	1 cut(s)	128
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	3 cut(s)	34, 387, 400
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	4 cut(s)	75, 312, 386, 447
HapII	CCGG	2 cut(s)	30, 356
HgaI	GACGC	1 cut(s)	355
HhaI	GCGC	1 cut(s)	111
Hin1I	GRCGYC	1 cut(s)	347
Hin1II	CATG	1 cut(s)	368
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HinfI	GANTC	1 cut(s)	422
HpaII	CCGG	2 cut(s)	30, 356
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188I	TCNGA	2 cut(s)	154, 210
Hpy188III	TCNNGA	2 cut(s)	179, 214
Hpy8I	GTNNAC	1 cut(s)	375
Hpy99I	CGWCG	1 cut(s)	210
HpyAV	CCTTC	4 cut(s)	111, 211, 218, 235
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4V	TGCA	3 cut(s)	159, 297, 407
HpyF3I	CTNAG	2 cut(s)	58, 193
Hsp92I	GRCGYC	1 cut(s)	347
Hsp92II	CATG	1 cut(s)	368
HspAI	GCGC	1 cut(s)	109
KroI	GCCGGC	1 cut(s)	29
KroNI	GCCGGC	1 cut(s)	31
Kzo9I	GATC	5 cut(s)	12, 196, 210, 231, 257
LmnI	GCTCC	2 cut(s)	287, 310
Lsp1109I	GCAGC	1 cut(s)	45
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	5 cut(s)	14, 198, 212, 233, 259
MbiI	CCGCTC	1 cut(s)	290
MboI	GATC	5 cut(s)	12, 196, 210, 231, 257
MboII	GAAGA	2 cut(s)	181, 258
MflI	RGATCY	4 cut(s)	12, 196, 210, 257
MhlI	GDGCHC	2 cut(s)	307, 455
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	3 cut(s)	188, 265, 340
MnlI	CCTC	6 cut(s)	75, 124, 175, 214, 410, 436
MroNI	GCCGGC	1 cut(s)	29
MspI	CCGG	2 cut(s)	30, 356
MspR9I	CCNGG	2 cut(s)	309, 449
MvaI	CCWGG	2 cut(s)	309, 449
NaeI	GCCGGC	1 cut(s)	31
NdeII	GATC	5 cut(s)	12, 196, 210, 231, 257
NgoMIV	GCCGGC	1 cut(s)	29
NlaIII	CATG	1 cut(s)	368
NlaIV	GGNNCC	1 cut(s)	14
NmeAIII	GCCGAG	2 cut(s)	51, 338
NspV	TTCGAA	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	2 cut(s)	46, 236
PdiI	GCCGGC	1 cut(s)	31
PflFI	GACNNNGTC	1 cut(s)	366
PkrI	GCNGC	3 cut(s)	35, 388, 401
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
Psp6I	CCWGG	2 cut(s)	307, 447
PspGI	CCWGG	2 cut(s)	307, 447
PspN4I	GGNNCC	1 cut(s)	14
PspPI	GGNCC	2 cut(s)	46, 445
PsuI	RGATCY	4 cut(s)	12, 196, 210, 257
PsyI	GACNNNGTC	1 cut(s)	366
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SatI	GCNGC	3 cut(s)	34, 387, 400
Sau3AI	GATC	5 cut(s)	12, 196, 210, 231, 257
Sau96I	GGNCC	2 cut(s)	46, 445
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	2 cut(s)	309, 449
SduI	GDGCHC	2 cut(s)	307, 455
SetI	ASST	3 cut(s)	86, 186, 246
SfuI	TTCGAA	1 cut(s)	239
SinI	GGWCC	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
SsiI	CCGC	4 cut(s)	290, 387, 399, 402
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	2 cut(s)	307, 447
TaaI	ACNGT	1 cut(s)	168
TaqI	TCGA	4 cut(s)	105, 215, 230, 239
TauI	GCSGC	2 cut(s)	389, 402
TscAI	CASTG	2 cut(s)	66, 357
TseI	GCWGC	1 cut(s)	33
TspDTI	ATGAA	1 cut(s)	264
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	2 cut(s)	66, 357
Tth111I	GACNNNGTC	1 cut(s)	366
VpaK11BI	GGWCC	1 cut(s)	46
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.