MD03G1279100.v1.1

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
36086365 .. 36090131
3767 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1279100.v1.1.491

Sequence Viewer

Length: 3627 bp
ATGGCGGAAGGAGTTCTATTCAACGTTGCAGCACAGATCATCGGAAGGCTAGGCTCCCTTGCTTTCCAAGAGATCGGATTGATTTGGGGTGTCCAAGATGAGCTCCACAAGCTCCAGGAGATTGTTGCCGGATTCCAAGGTGTTCTTCTTGACGTTGAGCAAAAGCAAACCAACAATGAAGTCAAACTATGGCTCGAAAGCGTAGAAGATGCAGTTTATGAAGCCGATGACCTGCTGGATGAGTTTAATACTGAAGCTCAGCAGAGACAAATGATGTGTGGCAATACTAAGATGTCAAGGAAGGTACGCCTCTTCTTCTCTAGCTCAAATCAACTTGCTTTTCGGCTAAAGATGGGTCATAAGATAAAAGATATTAACAAGAGGCTTCGTGAGGTTGCATCTCGTAGAGCCTTTCCCTTAGAAGTAAATCGTGAAGATACACGATTTATAATTAGAGAGAGGATCACTCACTCATTTGTCCCTAAGGAAAATGTTATAGGGAGAGATGCAGATAAAAAGGCAATTATTCAACTTTTGTTGGATCCCATCTCAACTGAGAATGTGTCAACCATTTCCATAGTTGGATTTGGAGGATTGGGGAAAACTGCTCTTGCCCAACTCATATTCAACGATGAGGTGATTCAAAATCATTTTGAGTTGAAAATATGGTCATGTATCTCTAATGTATTTGAGTTGGATATAGTCGTTAAGAAAATACTAAAAGTTGACAAGATTGATATGGATGAGCTGCAAAATGATCTTAGAAGAAAAGTAGGTGGAAAGAAATACCTAATTGTGTTGGATGATGTGTGGAATGAGAATCGGGAGAAATGGCTTAGCTTGAAGTACTTGTTAATGGGGGGTGGAAAAGGTAGTAGAATACTGATAACCACTCGTAGTGAAACAGTTGCGAAGATATCAGACACAGCTAAACCGTACAGCTTAAGGGGTTTGAATCAAGAGGAAAGTTGGTCTTTATTTAAGGAAATGGCTTTTAAAGATGGAAAAGAGCCAGAGAATTCAACAATTAAGGCAATTGGGAAGGAGGTTGCAAGAAAATGTCAGGGAGTTCCACTTGCTATAAGGACAATAGGTGGGATGTTGCGCACCAAATATCATGAAACAGAATGGTTGAATTTCAAAGAAAATAAACTTTCAAGAATAAATCAGGATGAAAATGAAATTTTACCGACACTTAAACTAAGTTATGATGTGCTCCCATCACATTTGAAGCATTGTTTTGCTTACTGTAGCTTGTTCCCACCTGATTATGAGATCTCTATACCGATGTTGATTAGACTTTGGGTGGCGCAAGGGTTCATTAAGTCATCCGGTGAAAACGAGAGTTTGGAGGATGTTGCGTATGAGTATTATATGGAATTGTTGTGCAGATCGTTTTTTCAAGAAGAAGAAAAAGATGAGTTTGGTATAATAACAAGTTGTAAAATGCACGATCTCATGAATGAACTTGCAATCTTAGTGTCAGGGGTCGGAAGCACCATTGTTGATCTGAACCAAAAGAAATTTCATGAAAAGCTTCGTCATGTATCTTTCAGTTTTCAGGTTGATCCGTTGAAATGGGAAGTGCCAGCTTCCTTGCTAAAAGCAAAAAAGATACGAACTTTTCTTCTTCCTTGCCAACAGCATAGAAGTAGTTCATTATGTAATTCATTTTGCGTTACAATTATTTCAAATTTTAAGTCGTTGCGTATGTTGAGTCTCAAAGATTTTGGAATTTCAAAATTACCTATTTGTCTTAAAAAAGTCAAACATTTGAGATATCTTGATCTTAGTGGTAATCGCATCGAGAGACTTCCAGATTGGATAGTTGGACTTTCGAATTTGGAAACACTTGATCTCTCTTACTGCCAGGAGCTTGTGGAATTGCCTAGAGACATCAAAAACATGATAAACTTAAGGCATCTCATCTTGGAAGGCTGTGATAAATTGACTCGAATGCCACGTGGATTGGGGGAGCTGACCGGTCTTCGTACATTGGATAAATTTGTTTTAAGCGAAAACAATTCTTTGTTGAGGGACAGTGCTGGTCTTGGTGAACTGGGAAAGCTTAGGGAATTAAGGGGACAGTTAGAAATTATAATTTTGAGGCAGGAGAAAGATGTGATGTCAGATTCAAATGTTGGTACGCCTCTCAAGGAGAAACAGCATCTCCATTCATTGACTTTAAAGTGGAAACGTGGAGAAGATGTAAACGCAGTTGATGAGAAGGATATTATAATGTCAATTGAAGTGTTGCAACCCCATTCAAATCTAAAGAAGTTGTCCGTGTCTCATTATGGTGGTGTGACGTTTGCGAGTTGGTTTTCTTCTCTCATAAATCTTGTTGATCTCACATTGACTGGGTGTCATAGGTGCCAACATCTTCCACCCTTGGATCGTTTCCCATCCCTTAAGTCTCTTTCTCTTGACGGGTTTGAGAAGTTGGAGTACATATCAGACAATACCACCAGCAGTAATAGTATGAGTGATGAGATGATGAAGATCTCATTCTTTCCCTCCCTGGAGGAGCTCTCCTTATTAGGTTGCCCTGTTCTGAAGGGATGGTGGAGGGCGCACACTCATAACAATGCTTCTTCTTCTTCATCAACGGAAAATCTGTCGTTGCCTTCTTTTCCCTGTCTTTCTCAATTGACTATTGATGAGTGTCCTAATCTAACTTCCATGCCTCTGTATCCAAATGTGGAGAGATTAGATCTCGAGAGGAGCAGCTGGAAGGTTGTTGATTCCTTGTTTGTTAGAGGAGCATCTGATATTACACATGATGTTGGTGTTGATGTTTCTGCCTCTTCTTCTTCCCCTCATCTCTCCAAATTAACACGTCTGTCACTCATTAAAATTGAGGATTTGGAATGTCTAACGTCACAAGGAATGGGCAACGTCCCATCACTCCAATCGCTTTACATTGCCGATTGCCCAAATTTGGCATTACTACCATATCATGGGATGGGCAACCTCGCAGCCTTTCGGGAGCTTGGAATTGGAGATTGCTCCAATTTGACATCAATGTCAGAAGGGATCGCCAATCTTACATCACTTCAGGTGCTTACAATTGGAAATTGCTCTGATCTGACATTACCGCCGGAAGTGGTCGTCAACCTCCCATCACTCCAATCACTTACGATTATGTTTTTCCCAAATTTGGTATCACTACCGGAAGAAATAAGCAATCTCACGTCACTGCAGCACCTTGTACTTATATGTTGCCCTAATTTGGCATCACTGCCAGAAGGGATTCGTCGACTCCCCAACTTAAATGGATTGAGAATTATGAGTTGCCCCATGTTAAGAGAAAGATGCGAGGAGGAAATAGGTGAGGACTGGCCTAAGATTGCTCACATCCCATACATTAACATTTATGACATACCATATGGTCAAAGATTTTCTTCACACTTTTGCTTTCTCGTTGACCAACACCGATTCCACAGCAAAGCGGTATGCATTCCTTACCCACTAACTTCATTTATTTATTTATTTTTTTTCAAAATGGAACCAACTAGTGACTTTACCACGGCAGTCTACTGTTTTGGAGGTTGCATTTTAGCCTCTCTACGGCCACCATCGTGTGGTTCACTAGCACCAAAAATCGAACAAAGATGTGCCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1209

Amino Acids

136.57

Weight (kDa)

6.23

Isoelectric Point (pI)

42.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 13 - 97 7.4e-20 Rx N-terminal domain
NB-ARC PF00931 171 - 334 6.2e-30 NB-ARC domain
WHD_DRP PF23559 419 - 491 6.8e-24 Disease resistance protein Winged helix domain
LRR_14 PF23598 559 - 847 5.1e-27 Leucine-rich repeat region
LRR_8 PF13855 569 - 624 3.7e-08 Leucine rich repeat
LRR_4 PF12799 590 - 626 1.4e-06 Leucine Rich repeats (2 copies)
LRR_R13L1-DRL21 PF25019 684 - 811 8.8e-31 R13L1/DRL21 LRRs
LRR_14 PF23598 968 - 1126 5.2e-14 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000725)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 449, 2099, 2237
AasI GACNNNNNNGTC 1 cut(s) 3025
Acc16I TGCGCA 1 cut(s) 1106
Acc36I ACCTGC 1 cut(s) 240
AccB1I GGYRCC 1 cut(s) 2373
AccB7I CCANNNNNTGG 2 cut(s) 2960, 3584
AccI GTMKAC 2 cut(s) 3259, 3537
AciI CCGC 3 cut(s) 5, 3098, 3452
AclI AACGTT 1 cut(s) 24
AclWI GGATC 6 cut(s) 470, 536, 549, 1562, 2403, 3044
AcoI YGGCCR 1 cut(s) 3572
AcuI CTGAAG 3 cut(s) 273, 2576, 3041
AcvI CACGTG 1 cut(s) 1964
AfaI GTAC 7 cut(s) 306, 848, 938, 1993, 2146, 2450, 3213
AfiI CCNNNNNNNGG 6 cut(s) 2941, 2960, 3160, 3232, 3570, 3584
AflII CTTAAG 3 cut(s) 943, 1915, 2411
AflIII ACRYGT 1 cut(s) 2837
AgeI ACCGGT 1 cut(s) 1982
AhdI GACNNNNNGTC 1 cut(s) 2364
AhlI ACTAGT 1 cut(s) 3515
AjiI CACGTC 2 cut(s) 2840, 3195
AjnI CCWGG 3 cut(s) 114, 1869, 2520
AjuI GAANNNNNNNTTGG 4 cut(s) 129, 161, 1509, 1541
AleI CACNNNNGTG 1 cut(s) 3580
Alw21I GWGCWC 3 cut(s) 105, 1218, 2532
Alw26I GTCTC 6 cut(s) 259, 1724, 1804, 1887, 2295, 2421
AlwI GGATC 6 cut(s) 470, 536, 549, 1562, 2403, 3044
Ama87I CYCGRG 1 cut(s) 2717
AoxI GGCC 2 cut(s) 3341, 3572
ApeKI GCWGC 5 cut(s) 29, 748, 2727, 2978, 3202
ArsI GACNNNNNNTTYG 2 cut(s) 1685, 1717
AsiGI ACCGGT 1 cut(s) 1982
Asp700I GAANNNNTTC 4 cut(s) 12, 1536, 1654, 3252
AspLEI GCGC 3 cut(s) 1107, 1312, 2575
AsuHPI GGTGA 4 cut(s) 649, 1346, 2066, 3344
AsuII TTCGAA 1 cut(s) 1838
AvaI CYCGRG 1 cut(s) 2717
AxyI CCTNAGG 1 cut(s) 483
BamHI GGATCC 1 cut(s) 541
BanI GGYRCC 1 cut(s) 2373
BanII GRGCYC 2 cut(s) 105, 2532
BarI GAAGNNNNNNTAC 2 cut(s) 2432, 2464
BbrPI CACGTG 1 cut(s) 1964
BbsI GAAGAC 1 cut(s) 1979
Bbv12I GWGCWC 3 cut(s) 105, 1218, 2532
BbvI GCAGC 5 cut(s) 41, 735, 2739, 2990, 3214
BceAI ACGGC 3 cut(s) 3546, 3587, 3605
BciT130I CCWGG 3 cut(s) 116, 1871, 2522
BciVI GTATCC 1 cut(s) 2703
BcoDI GTCTC 6 cut(s) 259, 1724, 1804, 1887, 2295, 2421
BcuI ACTAGT 1 cut(s) 3515
BfaI CTAG 5 cut(s) 50, 321, 1890, 3516, 3593
BfmI CTRYAG 2 cut(s) 1249, 3200
BfrI CTTAAG 3 cut(s) 943, 1915, 2411
BfuAI ACCTGC 1 cut(s) 240
BfuI GTATCC 1 cut(s) 2703
BglII AGATCT 3 cut(s) 1275, 2502, 2713
BisI GCNGC 5 cut(s) 30, 749, 2728, 2979, 3203
BlpI GCTNAGC 2 cut(s) 258, 836
BlsI GCNGC 5 cut(s) 31, 750, 2729, 2980, 3204
BmcAI AGTACT 1 cut(s) 848
Bme1390I CCNGG 3 cut(s) 116, 1871, 2522
BmeRI GACNNNNNGTC 1 cut(s) 2364
BmeT110I CYCGRG 1 cut(s) 2717
BmgBI CACGTC 2 cut(s) 2840, 3195
BmiI GGNNCC 4 cut(s) 55, 543, 2375, 3510
BmrFI CCNGG 3 cut(s) 116, 1871, 2522
BmrI ACTGGG 2 cut(s) 2069, 2370
BmsI GCATC 9 cut(s) 199, 407, 496, 1812, 1930, 2176, 2774, 3245, 3305
BmuI ACTGGG 2 cut(s) 2069, 2370
BpiI GAAGAC 1 cut(s) 1979
BplI GAGNNNNNCTC 4 cut(s) 451, 483, 2516, 2548
BpmI CTGGAG 2 cut(s) 98, 2543
Bpu10I CCTNAGC 1 cut(s) 2069
Bpu1102I GCTNAGC 2 cut(s) 258, 836
Bpu14I TTCGAA 1 cut(s) 1838
BpuEI CTTGAG 1 cut(s) 2138
BsaAI YACGTR 1 cut(s) 1964
BsaBI GATNNNNATC 1 cut(s) 2501
BsaJI CCNNGG 4 cut(s) 136, 2391, 2520, 3528
BsaWI WCCGGW 3 cut(s) 1331, 1982, 3172
BsaXI ACNNNNNCTCC 4 cut(s) 2154, 2184, 2193, 2223
Bsc4I CCNNNNNNNGG 6 cut(s) 2941, 2960, 3160, 3232, 3570, 3584
Bse118I RCCGGY 1 cut(s) 1982
Bse1I ACTGG 3 cut(s) 2064, 2365, 3344
Bse21I CCTNAGG 1 cut(s) 483
Bse3DI GCAATG 1 cut(s) 2922
Bse8I GATNNNNATC 1 cut(s) 2501
BseBI CCWGG 3 cut(s) 116, 1871, 2522
BseDI CCNNGG 4 cut(s) 136, 2391, 2520, 3528
BseJI GATNNNNATC 1 cut(s) 2501
BseLI CCNNNNNNNGG 6 cut(s) 2941, 2960, 3160, 3232, 3570, 3584
BseMI GCAATG 1 cut(s) 2922
BseMII CTCAG 2 cut(s) 272, 546
BseNI ACTGG 3 cut(s) 2064, 2365, 3344
BseRI GAGGAG 4 cut(s) 2540, 2737, 2775, 3335
BseXI GCAGC 5 cut(s) 41, 735, 2739, 2990, 3214
BsgI GTGCAG 1 cut(s) 1408
BshFI GGCC 2 cut(s) 3343, 3574
BshNI GGYRCC 1 cut(s) 2373
BshTI ACCGGT 1 cut(s) 1982
BsiHKAI GWGCWC 3 cut(s) 105, 1218, 2532
BsiHKCI CYCGRG 1 cut(s) 2717
BsiSI CCGG 5 cut(s) 129, 1332, 1983, 3101, 3173
BslFI GGGAC 4 cut(s) 464, 2051, 2097, 2885
BslI CCNNNNNNNGG 6 cut(s) 2941, 2960, 3160, 3232, 3570, 3584
BsmAI GTCTC 6 cut(s) 259, 1724, 1804, 1887, 2295, 2421
BsmFI GGGAC 4 cut(s) 464, 2051, 2097, 2885
BsmI GAATGC 2 cut(s) 1962, 3459
BsnI GGCC 2 cut(s) 3343, 3574
BsoBI CYCGRG 1 cut(s) 2717
Bsp119I TTCGAA 1 cut(s) 1838
Bsp1286I GDGCHC 3 cut(s) 105, 1218, 2532
Bsp1720I GCTNAGC 2 cut(s) 258, 836
BspACI CCGC 3 cut(s) 5, 3098, 3452
BspANI GGCC 2 cut(s) 3343, 3574
BspCNI CTCAG 2 cut(s) 271, 547
BspHI TCATGA 3 cut(s) 1117, 1458, 1528
BspLI GGNNCC 4 cut(s) 55, 543, 2375, 3510
BspMAI CTGCAG 1 cut(s) 3204
BspMI ACCTGC 1 cut(s) 240
BspPI GGATC 6 cut(s) 470, 536, 549, 1562, 2403, 3044
BspT104I TTCGAA 1 cut(s) 1838
BspT107I GGYRCC 1 cut(s) 2373
BspTI CTTAAG 3 cut(s) 943, 1915, 2411
BsrDI GCAATG 1 cut(s) 2922
BsrFI RCCGGY 1 cut(s) 1982
BsrI ACTGG 3 cut(s) 2064, 2365, 3344
BssAI RCCGGY 1 cut(s) 1982
BssECI CCNNGG 4 cut(s) 136, 2391, 2520, 3528
BssT1I CCWWGG 2 cut(s) 136, 2391
Bst2UI CCWGG 3 cut(s) 116, 1871, 2522
Bst4CI ACNGT 6 cut(s) 907, 936, 1250, 2042, 2088, 3542
Bst6I CTCTTC 2 cut(s) 317, 2812
BstAFI CTTAAG 3 cut(s) 943, 1915, 2411
BstBAI YACGTR 1 cut(s) 1964
BstBI TTCGAA 1 cut(s) 1838
BstC8I GCNNGC 1 cut(s) 1590
BstDSI CCRYGG 1 cut(s) 3528
BstHHI GCGC 3 cut(s) 1107, 1312, 2575
BstMAI GTCTC 6 cut(s) 259, 1724, 1804, 1887, 2295, 2421
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstNI CCWGG 3 cut(s) 116, 1871, 2522
BstSCI CCNGG 3 cut(s) 114, 1869, 2520
BstSFI CTRYAG 2 cut(s) 1249, 3200
BstV1I GCAGC 5 cut(s) 41, 735, 2739, 2990, 3214
BstV2I GAAGAC 1 cut(s) 1979
BstX2I RGATCY 4 cut(s) 541, 1275, 2502, 2713
BstYI RGATCY 4 cut(s) 541, 1275, 2502, 2713
Bsu36I CCTNAGG 1 cut(s) 483
BsuI GTATCC 1 cut(s) 2703
BsuRI GGCC 2 cut(s) 3343, 3574
BtgI CCRYGG 1 cut(s) 3528
BtrI CACGTC 2 cut(s) 2840, 3195
BtsI GCAGTG 2 cut(s) 3197, 3239
BtsIMutI CAGTG 3 cut(s) 2047, 3197, 3239
BveI ACCTGC 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 1590
CciI TCATGA 3 cut(s) 1117, 1458, 1528
CfoI GCGC 3 cut(s) 1107, 1312, 2575
Cfr10I RCCGGY 1 cut(s) 1982
Csp6I GTAC 7 cut(s) 305, 847, 937, 1992, 2145, 2449, 3212
CspAI ACCGGT 1 cut(s) 1982
CspCI CAANNNNNGTGG 2 cut(s) 1950, 1985
CviQI GTAC 7 cut(s) 305, 847, 937, 1992, 2145, 2449, 3212
DraI TTTAAA 2 cut(s) 997, 2187
DrdI GACNNNNNNGTC 1 cut(s) 3025
DriI GACNNNNNGTC 1 cut(s) 2364
DseDI GACNNNNNNGTC 1 cut(s) 3025
EaeI YGGCCR 1 cut(s) 3572
Eam1104I CTCTTC 2 cut(s) 317, 2812
Eam1105I GACNNNNNGTC 1 cut(s) 2364
EarI CTCTTC 2 cut(s) 317, 2812
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 2 cut(s) 103, 2530
Eco130I CCWWGG 2 cut(s) 136, 2391
Eco24I GRGCYC 2 cut(s) 105, 2532
Eco32I GATATC 2 cut(s) 918, 1781
Eco53kI GAGCTC 2 cut(s) 103, 2530
Eco57I CTGAAG 3 cut(s) 273, 2576, 3041
Eco72I CACGTG 1 cut(s) 1964
Eco81I CCTNAGG 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 2717
EcoICRI GAGCTC 2 cut(s) 103, 2530
EcoRI GAATTC 1 cut(s) 1018
EcoRII CCWGG 3 cut(s) 114, 1869, 2520
EcoRV GATATC 2 cut(s) 918, 1781
EcoT14I CCWWGG 2 cut(s) 136, 2391
EcoT22I ATGCAT 1 cut(s) 3461
EcoT38I GRGCYC 2 cut(s) 105, 2532
ErhI CCWWGG 2 cut(s) 136, 2391
FalI AAGNNNNNCTT 6 cut(s) 129, 161, 958, 990, 3388, 3420
FaqI GGGAC 4 cut(s) 464, 2051, 2097, 2885
FauNDI CATATG 1 cut(s) 3388
FblI GTMKAC 2 cut(s) 3259, 3537
Fnu4HI GCNGC 5 cut(s) 30, 749, 2728, 2979, 3203
FriOI GRGCYC 2 cut(s) 105, 2532
Fsp4HI GCNGC 5 cut(s) 30, 749, 2728, 2979, 3203
FspBI CTAG 5 cut(s) 50, 321, 1890, 3516, 3593
FspI TGCGCA 1 cut(s) 1106
GlaI GCGC 3 cut(s) 1106, 1311, 2574
GluI GCNGC 5 cut(s) 30, 749, 2728, 2979, 3203
GsuI CTGGAG 2 cut(s) 98, 2543
HaeIII GGCC 2 cut(s) 3343, 3574
HapII CCGG 5 cut(s) 129, 1332, 1983, 3101, 3173
HhaI GCGC 3 cut(s) 1107, 1312, 2575
Hin6I GCGC 3 cut(s) 1105, 1310, 2573
HinP1I GCGC 3 cut(s) 1105, 1310, 2573
HincII GTYRAC 5 cut(s) 567, 727, 3115, 3260, 3427
HindII GTYRAC 5 cut(s) 567, 727, 3115, 3260, 3427
HindIII AAGCTT 2 cut(s) 1535, 2066
HpaII CCGG 5 cut(s) 129, 1332, 1983, 3101, 3173
HphI GGTGA 4 cut(s) 649, 1346, 2066, 3344
Hpy166II GTNNAC 9 cut(s) 567, 727, 2057, 2212, 3115, 3260, 3427, 3538, 3590
Hpy8I GTNNAC 9 cut(s) 567, 727, 2057, 2212, 3115, 3260, 3427, 3538, 3590
Hpy99I CGWCG 1 cut(s) 3261
HpyCH4III ACNGT 6 cut(s) 907, 936, 1250, 2042, 2088, 3542
HpyCH4IV ACGT 9 cut(s) 24, 153, 1963, 2197, 2309, 2839, 2879, 2898, 3194
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpySE526I ACGT 9 cut(s) 24, 153, 1963, 2197, 2309, 2839, 2879, 2898, 3194
HspAI GCGC 3 cut(s) 1105, 1310, 2573
Lsp1109I GCAGC 5 cut(s) 41, 735, 2739, 2990, 3214
LweI GCATC 9 cut(s) 199, 407, 496, 1812, 1930, 2176, 2774, 3245, 3305
MaeI CTAG 5 cut(s) 50, 321, 1890, 3516, 3593
MaeII ACGT 9 cut(s) 24, 153, 1963, 2197, 2309, 2839, 2879, 2898, 3194
MaeIII GTNAC 6 cut(s) 1678, 2305, 2844, 2880, 3195, 3518
MfeI CAATTG 4 cut(s) 1035, 2244, 2648, 3069
MflI RGATCY 4 cut(s) 541, 1275, 2502, 2713
MhlI GDGCHC 3 cut(s) 105, 1218, 2532
MlyI GAGTC 3 cut(s) 1726, 1945, 3255
MmeI TCCRAC 7 cut(s) 519, 562, 675, 780, 1471, 1810, 2424
Mph1103I ATGCAT 1 cut(s) 3461
MroXI GAANNNNTTC 4 cut(s) 12, 1536, 1654, 3252
MslI CAYNNNNRTG 3 cut(s) 2298, 2586, 3580
MspA1I CMGCKG 1 cut(s) 2730
MspCI CTTAAG 3 cut(s) 943, 1915, 2411
MspI CCGG 5 cut(s) 129, 1332, 1983, 3101, 3173
MspR9I CCNGG 3 cut(s) 116, 1871, 2522
MunI CAATTG 4 cut(s) 1035, 2244, 2648, 3069
Mva1269I GAATGC 2 cut(s) 1962, 3459
MvaI CCWGG 3 cut(s) 116, 1871, 2522
MwoI GCNNNNNNNGC 1 cut(s) 109
NdeI CATATG 1 cut(s) 3388
NlaIV GGNNCC 4 cut(s) 55, 543, 2375, 3510
NmuCI GTSAC 5 cut(s) 2305, 2844, 2880, 3195, 3518
NsbI TGCGCA 1 cut(s) 1106
NsiI ATGCAT 1 cut(s) 3461
NspV TTCGAA 1 cut(s) 1838
OliI CACNNNNGTG 1 cut(s) 3580
PaeR7I CTCGAG 1 cut(s) 2717
PagI TCATGA 3 cut(s) 1117, 1458, 1528
PcsI WCGNNNNNNNCGW 1 cut(s) 1960
PctI GAATGC 2 cut(s) 1962, 3459
PdmI GAANNNNTTC 4 cut(s) 12, 1536, 1654, 3252
PfeI GAWTC 8 cut(s) 132, 640, 820, 955, 2132, 2744, 3253, 3438
PflMI CCANNNNNTGG 2 cut(s) 2960, 3584
PfoI TCCNGGA 1 cut(s) 114
PinAI ACCGGT 1 cut(s) 1982
PkrI GCNGC 5 cut(s) 31, 750, 2729, 2980, 3204
PleI GAGTC 3 cut(s) 1725, 1945, 3255
PmaCI CACGTG 1 cut(s) 1964
PmlI CACGTG 1 cut(s) 1964
PpsI GAGTC 3 cut(s) 1725, 1945, 3255
Ppu21I YACGTR 1 cut(s) 1964
PsiI TTATAA 3 cut(s) 449, 2099, 2237
Psp124BI GAGCTC 2 cut(s) 105, 2532
Psp1406I AACGTT 1 cut(s) 24
Psp6I CCWGG 3 cut(s) 114, 1869, 2520
PspCI CACGTG 1 cut(s) 1964
PspGI CCWGG 3 cut(s) 114, 1869, 2520
PspN4I GGNNCC 4 cut(s) 55, 543, 2375, 3510
PstI CTGCAG 1 cut(s) 3204
PsuI RGATCY 4 cut(s) 541, 1275, 2502, 2713
PvuII CAGCTG 1 cut(s) 2730
RsaI GTAC 7 cut(s) 306, 848, 938, 1993, 2146, 2450, 3213
RsaNI GTAC 7 cut(s) 305, 847, 937, 1992, 2145, 2449, 3212
RseI CAYNNNNRTG 3 cut(s) 2298, 2586, 3580
SacI GAGCTC 2 cut(s) 105, 2532
SalI GTCGAC 1 cut(s) 3258
SatI GCNGC 5 cut(s) 30, 749, 2728, 2979, 3203
ScaI AGTACT 1 cut(s) 848
SchI GAGTC 3 cut(s) 1726, 1945, 3255
ScrFI CCNGG 3 cut(s) 116, 1871, 2522
SduI GDGCHC 3 cut(s) 105, 1218, 2532
SfaNI GCATC 9 cut(s) 199, 407, 496, 1812, 1930, 2176, 2774, 3245, 3305
SfcI CTRYAG 2 cut(s) 1249, 3200
Sfr274I CTCGAG 1 cut(s) 2717
SfuI TTCGAA 1 cut(s) 1838
SlaI CTCGAG 1 cut(s) 2717
SmiMI CAYNNNNRTG 3 cut(s) 2298, 2586, 3580
SmlI CTYRAG 5 cut(s) 943, 1915, 2153, 2411, 2717
SmoI CTYRAG 5 cut(s) 943, 1915, 2153, 2411, 2717
SpeI ACTAGT 1 cut(s) 3515
SsiI CCGC 3 cut(s) 5, 3098, 3452
SspMI CTAG 5 cut(s) 50, 321, 1890, 3516, 3593
SstI GAGCTC 2 cut(s) 105, 2532
StyD4I CCNGG 3 cut(s) 114, 1869, 2520
StyI CCWWGG 2 cut(s) 136, 2391
TaaI ACNGT 6 cut(s) 907, 936, 1250, 2042, 2088, 3542
TaiI ACGT 9 cut(s) 27, 156, 1966, 2200, 2312, 2842, 2882, 2901, 3197
TaqI TCGA 7 cut(s) 195, 1806, 1838, 1954, 2718, 3259, 3606
TatI WGTACW 3 cut(s) 846, 2448, 3211
TfiI GAWTC 8 cut(s) 132, 640, 820, 955, 2132, 2744, 3253, 3438
TscAI CASTG 3 cut(s) 2047, 3204, 3246
TseFI GTSAC 5 cut(s) 2305, 2844, 2880, 3195, 3518
TseI GCWGC 5 cut(s) 29, 748, 2727, 2978, 3202
Tsp45I GTSAC 5 cut(s) 2305, 2844, 2880, 3195, 3518
TspGWI ACGGA 3 cut(s) 1560, 2275, 2624
TspRI CASTG 3 cut(s) 2047, 3204, 3246
Van91I CCANNNNNTGG 2 cut(s) 2960, 3584
Vha464I CTTAAG 3 cut(s) 943, 1915, 2411
XhoI CTCGAG 1 cut(s) 2717
XmiI GTMKAC 2 cut(s) 3259, 3537
XmnI GAANNNNTTC 4 cut(s) 12, 1536, 1654, 3252
XspI CTAG 5 cut(s) 50, 321, 1890, 3516, 3593
ZrmI AGTACT 1 cut(s) 848
Zsp2I ATGCAT 1 cut(s) 3461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.