pycom13g15290

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
11142302 .. 11143644
1343 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g15290.3

Sequence Viewer

Length: 1008 bp
ATGAATTACAAGAGCCGAATTTTCTCATCTTCGAAATGGCCGCAGAAAAAAATGGTTATGGAGGAATTGCAGATTCTGCTTCGAAAGAAATCGGATGGGAAAGTAAGATCTCCGGTAACAACTCGTAGCACCAAGGTTACCTCGGTTATGGATATAGATTTACCGTACGTGCTGGAGGAGGAGAACCCGATGTGGTGCCAATTGGAAGAAGAATTGCAAACCAGTGCCAACTGCCAAGGCGTTCCTCTTGCAATAAGGACTCTGGGAAGCTTGATGAGATACAAAACTAGCGAAAGTGAATGGTTGGCGATTCAAAATAATGAAATTTGGGAGTTTCCGAACGAGGAGAATGACATTTTAGCAATACTGAAGCTAAAGCGAAGCTATGACCACATGCCAGTTTATTCGAAACAATGGTTCTCCTACTGTGCCTTGTGTAATGCAGGAAACTTCTTCTCGGGAAGGCCTCCGATCCCATCAGAATTTGAAGGTGCTGAACATAGTTGGGTCTTGGGCGTTAAATTCCCCGACTGGTTGATGACCAACACTGCAATGTCTCTGCCAAGTCTAGTTGAAATCACCATTGAGGCACTGATAGTAAAAAACGACGACAATGGAACAAGAAGCGAGGCGAATCAGCAGTTGCTATCATTTCCTTCCCTCACCAAATCAACAATAATGGACACCCTCAGTTTGCTGTCCATGCCAATGCTTCCACAAGTTGAAGAACTGATTATGATCCATATCACTGACAAGCTCCTCAAGTCAATGGTGAAAGTAGCAAAAGCAGCTTCTGAAAGTTCAACAGCTTCTTCCTCCTCCTCCTCCTCCTCCTCCCTTGCTAGGTTGAAGTATCTGAGAATCAAATCCTGCAATGATCTCGTGTCTTTGCCTGATAACAGGATGTGTAGCCTCACTTCTCTTGAGCTCCTGGAGATTGTAGCTTGTGAAAATTTGAAATCTCTACCTAAAGAAATGTGTTGCAAGTTCACTAGGCCAGAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

336

Amino Acids

37.9

Weight (kDa)

5.83

Isoelectric Point (pI)

55.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000725)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 195
AciI CCGC 1 cut(s) 41
AclWI GGATC 2 cut(s) 466, 733
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 6 cut(s) 18, 324, 482, 521, 952, 1002
AcuI CTGAAG 1 cut(s) 389
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 843
AgsI TTSAA 7 cut(s) 314, 488, 575, 725, 804, 850, 958
AjnI CCWGG 1 cut(s) 930
AluBI AGCT 8 cut(s) 270, 373, 384, 757, 791, 809, 928, 944
AluI AGCT 8 cut(s) 270, 373, 384, 757, 791, 809, 928, 944
Alw21I GWGCWC 1 cut(s) 930
Alw26I GTCTC 1 cut(s) 561
AlwI GGATC 2 cut(s) 466, 733
AlwNI CAGNNNCTG 2 cut(s) 76, 794
Ama87I CYCGRG 1 cut(s) 457
AoxI GGCC 3 cut(s) 38, 464, 995
ApeKI GCWGC 1 cut(s) 788
ApoI RAATTY 6 cut(s) 18, 324, 482, 521, 952, 1002
AsuHPI GGTGA 3 cut(s) 571, 655, 784
AsuII TTCGAA 3 cut(s) 32, 82, 407
AvaI CYCGRG 1 cut(s) 457
BanI GGYRCC 1 cut(s) 195
BanII GRGCYC 1 cut(s) 930
BarI GAAGNNNNNNTAC 2 cut(s) 901, 933
BauI CACGAG 1 cut(s) 881
Bbv12I GWGCWC 1 cut(s) 930
BbvI GCAGC 1 cut(s) 800
BccI CCATC 2 cut(s) 89, 484
BcgI CGANNNNNNTGC 2 cut(s) 862, 896
BciT130I CCWGG 1 cut(s) 932
BcoDI GTCTC 1 cut(s) 561
BfaI CTAG 4 cut(s) 288, 569, 843, 993
BglII AGATCT 1 cut(s) 107
BisI GCNGC 2 cut(s) 41, 789
BlsI GCNGC 2 cut(s) 42, 790
Bme1390I CCNGG 1 cut(s) 932
BmeT110I CYCGRG 1 cut(s) 457
BmiI GGNNCC 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 932
BpmI CTGGAG 2 cut(s) 194, 953
Bpu14I TTCGAA 3 cut(s) 32, 82, 407
BpuEI CTTGAG 2 cut(s) 746, 944
BsaAI YACGTR 1 cut(s) 169
BsaBI GATNNNNATC 2 cut(s) 737, 743
BsaJI CCNNGG 3 cut(s) 132, 141, 235
BsaWI WCCGGW 1 cut(s) 112
Bsc4I CCNNNNNNNGG 1 cut(s) 843
Bse1I ACTGG 3 cut(s) 222, 398, 536
Bse3DI GCAATG 2 cut(s) 558, 880
Bse8I GATNNNNATC 2 cut(s) 737, 743
BseBI CCWGG 1 cut(s) 932
BseDI CCNNGG 3 cut(s) 132, 141, 235
BseGI GGATG 2 cut(s) 100, 909
BseJI GATNNNNATC 2 cut(s) 737, 743
BseLI CCNNNNNNNGG 1 cut(s) 843
BseMI GCAATG 2 cut(s) 558, 880
BseMII CTCAG 2 cut(s) 703, 848
BseNI ACTGG 3 cut(s) 222, 398, 536
BseXI GCAGC 1 cut(s) 800
BshFI GGCC 3 cut(s) 40, 466, 997
BshNI GGYRCC 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 930
BsiHKCI CYCGRG 1 cut(s) 457
BsiSI CCGG 1 cut(s) 113
BsiWI CGTACG 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 843
BsmAI GTCTC 1 cut(s) 561
BsnI GGCC 3 cut(s) 40, 466, 997
BsoBI CYCGRG 1 cut(s) 457
Bsp119I TTCGAA 3 cut(s) 32, 82, 407
Bsp1286I GDGCHC 1 cut(s) 930
Bsp143I GATC 4 cut(s) 107, 471, 738, 877
BspACI CCGC 1 cut(s) 41
BspANI GGCC 3 cut(s) 40, 466, 997
BspCNI CTCAG 2 cut(s) 702, 849
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 2 cut(s) 466, 733
BspT104I TTCGAA 3 cut(s) 32, 82, 407
BspT107I GGYRCC 1 cut(s) 195
BsrDI GCAATG 2 cut(s) 558, 880
BsrI ACTGG 3 cut(s) 222, 398, 536
BssECI CCNNGG 3 cut(s) 132, 141, 235
BssMI GATC 4 cut(s) 107, 471, 738, 877
BssSI CACGAG 1 cut(s) 881
BssT1I CCWWGG 2 cut(s) 132, 235
Bst2BI CACGAG 1 cut(s) 881
Bst2UI CCWGG 1 cut(s) 932
Bst4CI ACNGT 2 cut(s) 165, 428
BstAPI GCANNNNNTGC 1 cut(s) 76
BstBAI YACGTR 1 cut(s) 169
BstBI TTCGAA 3 cut(s) 32, 82, 407
BstDEI CTNAG 2 cut(s) 689, 857
BstEII GGTNACC 1 cut(s) 136
BstF5I GGATG 2 cut(s) 100, 909
BstKTI GATC 4 cut(s) 110, 474, 741, 880
BstMAI GTCTC 1 cut(s) 561
BstMBI GATC 4 cut(s) 107, 471, 738, 877
BstMWI GCNNNNNNNGC 3 cut(s) 76, 703, 788
BstNI CCWGG 1 cut(s) 932
BstNSI RCATGY 1 cut(s) 397
BstPI GGTNACC 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 930
BstV1I GCAGC 1 cut(s) 800
BstX2I RGATCY 1 cut(s) 107
BstYI RGATCY 1 cut(s) 107
BsuRI GGCC 3 cut(s) 40, 466, 997
BtsCI GGATG 2 cut(s) 100, 909
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 4 cut(s) 229, 546, 590, 747
CaiI CAGNNNCTG 2 cut(s) 76, 794
Csp6I GTAC 1 cut(s) 166
CviAII CATG 2 cut(s) 394, 703
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 2 cut(s) 689, 857
DpnI GATC 4 cut(s) 109, 473, 740, 879
DpnII GATC 4 cut(s) 107, 471, 738, 877
EaeI YGGCCR 1 cut(s) 38
Ecl136II GAGCTC 1 cut(s) 928
Eco130I CCWWGG 2 cut(s) 132, 235
Eco147I AGGCCT 1 cut(s) 466
Eco24I GRGCYC 1 cut(s) 930
Eco53kI GAGCTC 1 cut(s) 928
Eco57I CTGAAG 1 cut(s) 389
Eco88I CYCGRG 1 cut(s) 457
Eco91I GGTNACC 1 cut(s) 136
EcoICRI GAGCTC 1 cut(s) 928
EcoO65I GGTNACC 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 930
EcoT14I CCWWGG 2 cut(s) 132, 235
EcoT38I GRGCYC 1 cut(s) 930
ErhI CCWWGG 2 cut(s) 132, 235
FaeI CATG 2 cut(s) 397, 706
FaiI YATR 9 cut(s) 59, 149, 155, 387, 395, 501, 704, 737, 744
FatI CATG 2 cut(s) 393, 702
Fnu4HI GCNGC 2 cut(s) 41, 789
FokI GGATG 2 cut(s) 107, 916
FriOI GRGCYC 1 cut(s) 930
Fsp4HI GCNGC 2 cut(s) 41, 789
FspBI CTAG 4 cut(s) 288, 569, 843, 993
GluI GCNGC 2 cut(s) 41, 789
GsuI CTGGAG 2 cut(s) 194, 953
HaeIII GGCC 3 cut(s) 40, 466, 997
HapII CCGG 1 cut(s) 113
Hin1II CATG 2 cut(s) 397, 706
HindIII AAGCTT 1 cut(s) 268
HinfI GANTC 5 cut(s) 73, 259, 310, 634, 861
HpaII CCGG 1 cut(s) 113
HphI GGTGA 3 cut(s) 571, 655, 784
Hpy166II GTNNAC 1 cut(s) 990
Hpy188I TCNGA 6 cut(s) 94, 339, 471, 481, 796, 858
Hpy188III TCNNGA 2 cut(s) 459, 923
Hpy8I GTNNAC 1 cut(s) 990
Hpy99I CGWCG 1 cut(s) 611
HpyAV CCTTC 3 cut(s) 456, 482, 666
HpyCH4III ACNGT 2 cut(s) 165, 428
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 7 cut(s) 70, 217, 251, 443, 551, 873, 984
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 703, 788
HpyF3I CTNAG 2 cut(s) 689, 857
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 2 cut(s) 397, 706
Kzo9I GATC 4 cut(s) 107, 471, 738, 877
LmnI GCTCC 2 cut(s) 762, 933
Lsp1109I GCAGC 1 cut(s) 800
MaeI CTAG 4 cut(s) 288, 569, 843, 993
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 2 cut(s) 115, 136
MalI GATC 4 cut(s) 109, 473, 740, 879
MboI GATC 4 cut(s) 107, 471, 738, 877
MboII GAAGA 6 cut(s) 21, 218, 221, 445, 737, 804
MfeI CAATTG 1 cut(s) 200
MflI RGATCY 1 cut(s) 107
MhlI GDGCHC 1 cut(s) 930
MlyI GAGTC 1 cut(s) 253
MseI TTAA 1 cut(s) 519
MslI CAYNNNNRTG 2 cut(s) 551, 707
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 932
MunI CAATTG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 932
MwoI GCNNNNNNNGC 3 cut(s) 76, 703, 788
NdeII GATC 4 cut(s) 107, 471, 738, 877
NlaIII CATG 2 cut(s) 397, 706
NlaIV GGNNCC 1 cut(s) 197
NspI RCATGY 1 cut(s) 397
NspV TTCGAA 3 cut(s) 32, 82, 407
PceI AGGCCT 1 cut(s) 466
PfeI GAWTC 4 cut(s) 73, 310, 634, 861
Pfl23II CGTACG 1 cut(s) 165
PfoI TCCNGGA 1 cut(s) 930
PkrI GCNGC 2 cut(s) 42, 790
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
Ppu21I YACGTR 1 cut(s) 169
Psp124BI GAGCTC 1 cut(s) 930
Psp6I CCWGG 1 cut(s) 930
PspEI GGTNACC 1 cut(s) 136
PspGI CCWGG 1 cut(s) 930
PspLI CGTACG 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 197
PstNI CAGNNNCTG 2 cut(s) 76, 794
PsuI RGATCY 1 cut(s) 107
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 2 cut(s) 551, 707
SacI GAGCTC 1 cut(s) 930
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 2 cut(s) 41, 789
Sau3AI GATC 4 cut(s) 107, 471, 738, 877
SchI GAGTC 1 cut(s) 253
ScrFI CCNGG 1 cut(s) 932
SduI GDGCHC 1 cut(s) 930
SfuI TTCGAA 3 cut(s) 32, 82, 407
SmiMI CAYNNNNRTG 2 cut(s) 551, 707
SmlI CTYRAG 2 cut(s) 761, 923
SmoI CTYRAG 2 cut(s) 761, 923
SseBI AGGCCT 1 cut(s) 466
SsiI CCGC 1 cut(s) 41
SspMI CTAG 4 cut(s) 288, 569, 843, 993
SstI GAGCTC 1 cut(s) 930
StuI AGGCCT 1 cut(s) 466
StyD4I CCNGG 1 cut(s) 930
StyI CCWWGG 2 cut(s) 132, 235
TaaI ACNGT 2 cut(s) 165, 428
TaiI ACGT 1 cut(s) 171
TaqI TCGA 3 cut(s) 32, 82, 407
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 4 cut(s) 73, 310, 634, 861
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 4 cut(s) 229, 553, 597, 754
TseI GCWGC 1 cut(s) 788
TspDTI ATGAA 2 cut(s) 17, 336
TspRI CASTG 4 cut(s) 229, 553, 597, 754
XapI RAATTY 6 cut(s) 18, 324, 482, 521, 952, 1002
XceI RCATGY 1 cut(s) 397
XspI CTAG 4 cut(s) 288, 569, 843, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.