pycom07g00690

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000725
Physical Location & Seq
Reverse (-)
594074 .. 595201
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g00690.1

Sequence Viewer

Length: 1128 bp
ATGTGTGGTGGAAAAAGTAGTAGAATACTAATAACCACTCGTAGTGAAACCGTTGCGACAATTTCAGATACAACTAAAGCATACACCTTAAAGGGTTTGAATGAAGAGCAAAGTTGGTCTTTATTTAAGAAAATGACTTTTAAAGATGGAAAAGAGCCAGAGAATTCAACAGTTAAGGCAGTTGGGAAGGAGGTTGCAAGAAAATGTCAGGGAGTCCCACTCGCTATAAGGACGATATGTGGGATGTTGTGCACCAAGCATCACGAATCAGAATGGTTGAATTTCAAGGATAAGAAACTTTCAAAATTAAGTCAAGAAGAAAATGATATTTTACCAACACTTAAACTAAGTTATGATGTGCTCCCATCACATTTGAAGCATTGTTTTGCTTATTGTAGCTTGTTTCCACTTGGTTATGAGATCTCTGTACCGAGACTGATTCAACTTTGGGTGGCACAAGGGTTCATTAAGTCATCTGACGAAAACGAGTGTTTGGAGGATGTTGCATATGAATACTACAAGGAATTGCTACGGAAATCTTTTTTTCAAGACGAAGAAAAAGATGAGTTTGGTTTAATAAGAAGCTGTAAAATGCATGATCTCATGAATGAACTTGCCATCTTAGTGTCAGGGATCAGAAGCACTGTAGTTGATTTGAATCGAGAGAATTTTCATGAAAAGCTTCATCATGTATCTTTCAATTTTAATGTTGATTTGTCATATTGGAAAGTGCCAACTTCCTTGCTAAATGCAAATAAGATACGAACTTTGCTTTTTCATCGCCAAGAATATTTGATCAAGGAATATTTTCCTCGTGATGAATATCGGATCAAGGAGTCATTATGTAATTCATTTTGTACTAAAATTGCTTCAAATTTTAAGTCATTACGTATGTTGAGTCTCAAGAAATTTGGAATTACAACATTACTTGAGTGTCTGAGGAAAATGAAACAGTTGAGATATCTTGATCTTAGTGATAATCCCATCGAGAGACTTCCAGATTGGATAGTTGGACTTCAAAATTTGGAAACACTAGATCTCTCCGGCTGTGAGAATCTTGTGGAACTGCCCAAAGGCATTAAGAAGATCGATCAACTTGAGGCATTTCGACTTGACAGGCTGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

376

Amino Acids

43.6

Weight (kDa)

8.32

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 134 - 206 6e-24 Disease resistance protein Winged helix domain
LRR_14 PF23598 290 - 372 9e-14 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 308 - 372 2.6e-07 R13L1/DRL21 LRRs
LRR_8 PF13855 313 - 350 1.6e-07 Leucine rich repeat
LRR_4 PF12799 317 - 353 1.9e-07 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000725)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g16700
malus_domestica MD02G1307600.v1.1 MD03G1278800.v1.1 MD03G1279100.v1.1 MD03G1279600.v1.1 MD03G1280000.v1.1 MD03G1280200.v1.1 MD07G1008400.v1.1 MD07G1014900.v1.1 MD07G1015700.v1.1 MD07G1016100.v1.1 MD07G1016200.v1.1 MD07G1016500.v1.1 MD07G1016600.v1.1 MD07G1016700.v1.1 MD07G1017400.v1.1 MD07G1019600.v1.1 MD07G1019800.v1.1 MD07G1023700.v1.1 MD07G1024100.v1.1 MD07G1024300.v1.1 MD07G1024400.v1.1 MD14G1086900.v1.1 MD14G1087000.v1.1 MD16G1179200.v1.1 MD17G1030800.v1.1
prunus_persica Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011400_v2.0.a1 Prupe.2G011500_v2.0.a1 Prupe.2G013800_v2.0.a1 Prupe.2G013800_v2.0.a1 Prupe.2G013800_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G014000_v2.0.a1 Prupe.2G014100_v2.0.a1
pyrus_communis pycom02g25880 pycom07g00690 pycom07g00720 pycom07g01130 pycom07g01140 pycom07g01150 pycom07g01160 pycom07g01260 pycom07g01280 pycom07g01300 pycom07g01320 pycom07g01550 pycom07g01790 pycom07g01810 pycom07g01840 pycom07g01850 pycom07g01870 pycom07g01880 pycom07g01890 pycom13g15290 pycom16g15040
rosa_chinensis RchiOBHm_Chr4g0420141
rosa_multiflora Rmu_sc0001252.1_g000002
rosa_roxburghii Rroxscaffold_1G00012760
rosa_rugosa Rorug04G0162600
rosa_samantha Rh4AG223400 Rh4BG225900 Rh4CG236600 Rh4DG222200
rosa_wichuraiana Rw4G019230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 641, 836
AcsI RAATTY 6 cut(s) 163, 280, 667, 874, 908, 1021
AfaI GTAC 2 cut(s) 429, 859
AluBI AGCT 3 cut(s) 399, 585, 682
AluI AGCT 3 cut(s) 399, 585, 682
Alw21I GWGCWC 2 cut(s) 254, 363
Alw26I GTCTC 3 cut(s) 427, 905, 985
Alw44I GTGCAC 1 cut(s) 250
AlwI GGATC 2 cut(s) 641, 836
ApaLI GTGCAC 1 cut(s) 250
ApoI RAATTY 6 cut(s) 163, 280, 667, 874, 908, 1021
ArsI GACNNNNNNTTYG 2 cut(s) 866, 898
Asp700I GAANNNNTTC 2 cut(s) 681, 807
BaeGI GKGCMC 1 cut(s) 254
BauI CACGAG 1 cut(s) 813
Bbv12I GWGCWC 2 cut(s) 254, 363
BccI CCATC 4 cut(s) 140, 373, 626, 992
BclI TGATCA 1 cut(s) 795
BcoDI GTCTC 3 cut(s) 427, 905, 985
BfaI CTAG 1 cut(s) 1034
BfmI CTRYAG 1 cut(s) 645
BglII AGATCT 2 cut(s) 420, 1036
BmsI GCATC 1 cut(s) 268
BplI GAGNNNNNCTC 2 cut(s) 204, 236
BpuEI CTTGAG 3 cut(s) 887, 950, 1118
Bsa29I ATCGAT 1 cut(s) 1089
BsaAI YACGTR 1 cut(s) 890
BsaBI GATNNNNATC 2 cut(s) 657, 822
Bse8I GATNNNNATC 2 cut(s) 657, 822
BseCI ATCGAT 1 cut(s) 1089
BseGI GGATG 2 cut(s) 249, 505
BseJI GATNNNNATC 2 cut(s) 657, 822
BseMII CTCAG 1 cut(s) 929
BseSI GKGCMC 1 cut(s) 254
BshVI ATCGAT 1 cut(s) 1089
BsiHKAI GWGCWC 2 cut(s) 254, 363
BsiSI CCGG 1 cut(s) 1044
BslFI GGGAC 1 cut(s) 200
BsmAI GTCTC 3 cut(s) 427, 905, 985
BsmFI GGGAC 1 cut(s) 200
Bsp1286I GDGCHC 2 cut(s) 254, 363
Bsp143I GATC 9 cut(s) 420, 598, 633, 795, 828, 967, 1036, 1086, 1090
BspCNI CTCAG 1 cut(s) 930
BspDI ATCGAT 1 cut(s) 1089
BspHI TCATGA 2 cut(s) 603, 673
BspPI GGATC 2 cut(s) 641, 836
BspQI GCTCTTC 1 cut(s) 99
BssMI GATC 9 cut(s) 420, 598, 633, 795, 828, 967, 1036, 1086, 1090
BssSI CACGAG 1 cut(s) 813
Bst2BI CACGAG 1 cut(s) 813
Bst4CI ACNGT 4 cut(s) 52, 172, 646, 954
Bst6I CTCTTC 1 cut(s) 99
BstBAI YACGTR 1 cut(s) 890
BstDEI CTNAG 4 cut(s) 347, 622, 938, 971
BstF5I GGATG 2 cut(s) 249, 505
BstKTI GATC 9 cut(s) 423, 601, 636, 798, 831, 970, 1039, 1089, 1093
BstMAI GTCTC 3 cut(s) 427, 905, 985
BstMBI GATC 9 cut(s) 420, 598, 633, 795, 828, 967, 1036, 1086, 1090
BstSFI CTRYAG 1 cut(s) 645
BstSLI GKGCMC 1 cut(s) 254
BstSNI TACGTA 1 cut(s) 890
BstX2I RGATCY 2 cut(s) 420, 1036
BstYI RGATCY 2 cut(s) 420, 1036
Bsu15I ATCGAT 1 cut(s) 1089
BsuTUI ATCGAT 1 cut(s) 1089
BtgZI GCGATG 1 cut(s) 764
BtsCI GGATG 2 cut(s) 249, 505
BtsIMutI CAGTG 1 cut(s) 642
CciI TCATGA 2 cut(s) 603, 673
ClaI ATCGAT 1 cut(s) 1089
Csp6I GTAC 2 cut(s) 428, 858
CviAII CATG 4 cut(s) 596, 604, 674, 689
CviJI RGCY 6 cut(s) 157, 399, 585, 682, 1047, 1120
CviKI_1 RGCY 6 cut(s) 157, 399, 585, 682, 1047, 1120
CviQI GTAC 2 cut(s) 428, 858
DdeI CTNAG 4 cut(s) 347, 622, 938, 971
DpnI GATC 9 cut(s) 422, 600, 635, 797, 830, 969, 1038, 1088, 1092
DpnII GATC 9 cut(s) 420, 598, 633, 795, 828, 967, 1036, 1086, 1090
DraI TTTAAA 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco105I TACGTA 1 cut(s) 890
Eco32I GATATC 1 cut(s) 962
EcoRI GAATTC 1 cut(s) 163
EcoRV GATATC 1 cut(s) 962
EcoT22I ATGCAT 1 cut(s) 597
FaeI CATG 4 cut(s) 599, 607, 677, 692
FalI AAGNNNNNCTT 2 cut(s) 103, 135
FaqI GGGAC 1 cut(s) 200
FatI CATG 4 cut(s) 595, 603, 673, 688
FauNDI CATATG 1 cut(s) 508
FbaI TGATCA 1 cut(s) 795
FokI GGATG 2 cut(s) 256, 512
FspBI CTAG 1 cut(s) 1034
HapII CCGG 1 cut(s) 1044
Hin1II CATG 4 cut(s) 599, 607, 677, 692
HindIII AAGCTT 1 cut(s) 680
HinfI GANTC 7 cut(s) 213, 266, 439, 658, 836, 898, 1054
HpaII CCGG 1 cut(s) 1044
Hpy166II GTNNAC 1 cut(s) 252
Hpy188I TCNGA 6 cut(s) 67, 271, 478, 638, 828, 939
Hpy8I GTNNAC 1 cut(s) 252
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 4 cut(s) 52, 172, 646, 954
HpyCH4IV ACGT 1 cut(s) 889
HpyCH4V TGCA 5 cut(s) 197, 252, 506, 595, 752
HpyF3I CTNAG 4 cut(s) 347, 622, 938, 971
HpySE526I ACGT 1 cut(s) 889
Hsp92II CATG 4 cut(s) 599, 607, 677, 692
Ksp22I TGATCA 1 cut(s) 795
Kzo9I GATC 9 cut(s) 420, 598, 633, 795, 828, 967, 1036, 1086, 1090
LguI GCTCTTC 1 cut(s) 99
LmnI GCTCC 1 cut(s) 366
LpnPI CCDG 6 cut(s) 171, 194, 615, 1011, 1057, 1102
LweI GCATC 1 cut(s) 268
MaeI CTAG 1 cut(s) 1034
MaeII ACGT 1 cut(s) 889
MalI GATC 9 cut(s) 422, 600, 635, 797, 830, 969, 1038, 1088, 1092
MboI GATC 9 cut(s) 420, 598, 633, 795, 828, 967, 1036, 1086, 1090
MboII GAAGA 4 cut(s) 116, 329, 566, 1096
MflI RGATCY 2 cut(s) 420, 1036
MhlI GDGCHC 2 cut(s) 254, 363
MlyI GAGTC 3 cut(s) 222, 845, 907
MmeI TCCRAC 1 cut(s) 991
MnlI CCTC 5 cut(s) 184, 490, 822, 933, 1093
Mph1103I ATGCAT 1 cut(s) 597
MroXI GAANNNNTTC 2 cut(s) 681, 807
MslI CAYNNNNRTG 1 cut(s) 623
MspI CCGG 1 cut(s) 1044
NdeI CATATG 1 cut(s) 508
NdeII GATC 9 cut(s) 420, 598, 633, 795, 828, 967, 1036, 1086, 1090
NlaIII CATG 4 cut(s) 599, 607, 677, 692
NsiI ATGCAT 1 cut(s) 597
PagI TCATGA 2 cut(s) 603, 673
PciSI GCTCTTC 1 cut(s) 99
PdmI GAANNNNTTC 2 cut(s) 681, 807
PfeI GAWTC 4 cut(s) 266, 439, 658, 1054
PleI GAGTC 3 cut(s) 221, 844, 906
PpsI GAGTC 3 cut(s) 221, 844, 906
Ppu21I YACGTR 1 cut(s) 890
PsuI RGATCY 2 cut(s) 420, 1036
RsaI GTAC 2 cut(s) 429, 859
RsaNI GTAC 2 cut(s) 428, 858
RseI CAYNNNNRTG 1 cut(s) 623
SapI GCTCTTC 1 cut(s) 99
Sau3AI GATC 9 cut(s) 420, 598, 633, 795, 828, 967, 1036, 1086, 1090
SchI GAGTC 3 cut(s) 222, 845, 907
SduI GDGCHC 2 cut(s) 254, 363
SetI ASST 6 cut(s) 89, 195, 401, 587, 684, 892
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 645
SmiMI CAYNNNNRTG 1 cut(s) 623
SmlI CTYRAG 3 cut(s) 902, 929, 1097
SmoI CTYRAG 3 cut(s) 902, 929, 1097
SnaBI TACGTA 1 cut(s) 890
SspI AATATT 2 cut(s) 791, 806
SspMI CTAG 1 cut(s) 1034
TaaI ACNGT 4 cut(s) 52, 172, 646, 954
TaiI ACGT 1 cut(s) 892
TaqI TCGA 4 cut(s) 661, 987, 1089, 1108
TatI WGTACW 1 cut(s) 857
TfiI GAWTC 4 cut(s) 266, 439, 658, 1054
TscAI CASTG 1 cut(s) 649
TspGWI ACGGA 1 cut(s) 547
TspRI CASTG 1 cut(s) 649
VneI GTGCAC 1 cut(s) 250
XapI RAATTY 6 cut(s) 163, 280, 667, 874, 908, 1021
XmnI GAANNNNTTC 2 cut(s) 681, 807
XspI CTAG 1 cut(s) 1034
Zsp2I ATGCAT 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.