pycom07g01260

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
962129 .. 963745
1617 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g01260.2

Sequence Viewer

Length: 897 bp
ATGAATCATAAGATAAAAAATATTAACAAGAGGCTTAGTGAGGTTGCATCTCGTAGACCCTTTGACTTAAAAGATAGTTGTGAAGATATACGATTTATAAAGAGAGAGAGGGTCACTCACTCATTTGTCCCTAAGGAAAATATTATAGGGAGGGATGAAGATACTAAGGCAATTACCCAACTTTTGTTGGATCCCATCTCAACTGAGAATGTGTCAACCATTTCCATAGTTGGAATTGGAGGATTGGGGAAAACTGCACTTGCCCAACTCATATTCAACGAGGAGGTGATTCAAAAGCATTTTGAGTTGAAAATATGGACATGTGTCTCTAATAAGTTTGAGTTGGATATAATTGTTAAAAAAATCCTTCAATCCGAGCATAATGGGATAGAGCAGTTGCAAAATGATCTTAGAAAAAAAGTAGATGGGAAAAAGTACCTACTTGTGTTGGATGACGTGTGGAATGAGGATCGAAAGAAGTGGCTTAGCTTGAAAAACTTGTTAATGGGTGGTGGAGAAGGTAGTAGAATACTAATAACCACTCGTAGTAAAACCGTTGTGACAATATTAGACACAGCTAAACCATACACCTTAAAGGGTTTGAATGAGGAGCAAAGTTGGTCTTTATTTAAGAAAATGGCTTATAAAGATGGAAAGGAGCCAGAGAATTCAACAATTAAGGCAGTTGGGAAGGAGGTTACTGGAAAATGTCAGGGAGGTCCACTTGCTATAAGGATGATAGGTGGGATGTTGTTCGCCAAATATATGTCCTGGTCAAATACCATCCAAGTATTCAACATGCTTCTGGAAGTGTCAAGTGGTTTCCTTTTTGGCAGTGCTGTGCTGCGTGCATTAGTTGAAAACCCAATAATTGTTATGTGTGCATGTATATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

299

Amino Acids

33.6

Weight (kDa)

9.16

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000725)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 98, 645
AccI GTMKAC 1 cut(s) 55
AclWI GGATC 3 cut(s) 185, 198, 477
AcsI RAATTY 1 cut(s) 667
AfaI GTAC 1 cut(s) 437
AflIII ACRYGT 2 cut(s) 320, 456
AgsI TTSAA 9 cut(s) 277, 293, 310, 371, 493, 604, 672, 796, 860
AjiI CACGTC 1 cut(s) 457
AjnI CCWGG 1 cut(s) 770
AluBI AGCT 2 cut(s) 489, 578
AluI AGCT 2 cut(s) 489, 578
Alw26I GTCTC 1 cut(s) 331
AlwI GGATC 3 cut(s) 185, 198, 477
ApeKI GCWGC 1 cut(s) 844
ApoI RAATTY 1 cut(s) 667
AspS9I GGNCC 1 cut(s) 719
AsuHPI GGTGA 1 cut(s) 298
AvaII GGWCC 1 cut(s) 719
AxyI CCTNAGG 1 cut(s) 132
BamHI GGATCC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 831
BccI CCATC 4 cut(s) 203, 419, 644, 791
BciT130I CCWGG 1 cut(s) 772
BcoDI GTCTC 1 cut(s) 331
BisI GCNGC 1 cut(s) 845
BlpI GCTNAGC 1 cut(s) 485
BlsI GCNGC 1 cut(s) 846
Bme1390I CCNGG 1 cut(s) 772
Bme18I GGWCC 1 cut(s) 719
BmgBI CACGTC 1 cut(s) 457
BmgT120I GGNCC 1 cut(s) 719
BmiI GGNNCC 2 cut(s) 192, 660
BmrFI CCNGG 1 cut(s) 772
BmsI GCATC 1 cut(s) 56
BoxI GACNNNNGTC 1 cut(s) 323
BplI GAGNNNNNCTC 2 cut(s) 100, 132
Bpu1102I GCTNAGC 1 cut(s) 485
Bse1I ACTGG 1 cut(s) 706
Bse21I CCTNAGG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 772
BseGI GGATG 5 cut(s) 160, 457, 741, 753, 783
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 706
BseRI GAGGAG 2 cut(s) 296, 623
BseXI GCAGC 1 cut(s) 831
BsgI GTGCAG 1 cut(s) 240
BslFI GGGAC 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 331
BsmFI GGGAC 1 cut(s) 113
Bsp143I GATC 3 cut(s) 190, 406, 469
Bsp1720I GCTNAGC 1 cut(s) 485
BspCNI CTCAG 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 192, 660
BspPI GGATC 3 cut(s) 185, 198, 477
BsrI ACTGG 1 cut(s) 706
BssMI GATC 3 cut(s) 190, 406, 469
Bst2UI CCWGG 1 cut(s) 772
Bst4CI ACNGT 1 cut(s) 556
BstC8I GCNNGC 1 cut(s) 849
BstDEI CTNAG 6 cut(s) 35, 132, 165, 204, 410, 485
BstF5I GGATG 5 cut(s) 160, 457, 741, 753, 783
BstKTI GATC 3 cut(s) 193, 409, 472
BstMAI GTCTC 1 cut(s) 331
BstMBI GATC 3 cut(s) 190, 406, 469
BstNI CCWGG 1 cut(s) 772
BstNSI RCATGY 3 cut(s) 324, 802, 888
BstPAI GACNNNNGTC 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 770
BstV1I GCAGC 1 cut(s) 831
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
Bsu36I CCTNAGG 1 cut(s) 132
BtrI CACGTC 1 cut(s) 457
BtsCI GGATG 5 cut(s) 160, 457, 741, 753, 783
BtsI GCAGTG 1 cut(s) 841
BtsIMutI CAGTG 1 cut(s) 841
Cac8I GCNNGC 1 cut(s) 849
Cfr13I GGNCC 1 cut(s) 719
Csp6I GTAC 1 cut(s) 436
CviAII CATG 3 cut(s) 321, 799, 885
CviJI RGCY 6 cut(s) 34, 484, 489, 578, 641, 661
CviKI_1 RGCY 6 cut(s) 34, 484, 489, 578, 641, 661
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 6 cut(s) 35, 132, 165, 204, 410, 485
DpnI GATC 3 cut(s) 192, 408, 471
DpnII GATC 3 cut(s) 190, 406, 469
Eco47I GGWCC 1 cut(s) 719
Eco81I CCTNAGG 1 cut(s) 132
EcoRI GAATTC 1 cut(s) 667
EcoRII CCWGG 1 cut(s) 770
FaeI CATG 3 cut(s) 324, 802, 888
FalI AAGNNNNNCTT 2 cut(s) 607, 639
FaqI GGGAC 1 cut(s) 113
FatI CATG 3 cut(s) 320, 798, 884
FblI GTMKAC 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 845
FokI GGATG 5 cut(s) 167, 464, 748, 760, 770
Fsp4HI GCNGC 1 cut(s) 845
GluI GCNGC 1 cut(s) 845
Hin1II CATG 3 cut(s) 324, 802, 888
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HinfI GANTC 2 cut(s) 4, 289
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 3 cut(s) 56, 216, 722
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 1 cut(s) 806
Hpy8I GTNNAC 3 cut(s) 56, 216, 722
HpyAV CCTTC 3 cut(s) 377, 512, 685
HpyCH4III ACNGT 1 cut(s) 556
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 5 cut(s) 47, 257, 400, 851, 884
HpyF3I CTNAG 6 cut(s) 35, 132, 165, 204, 410, 485
HpySE526I ACGT 1 cut(s) 456
Hsp92II CATG 3 cut(s) 324, 802, 888
Kzo9I GATC 3 cut(s) 190, 406, 469
LmnI GCTCC 2 cut(s) 610, 658
LpnPI CCDG 6 cut(s) 675, 687, 698, 757, 784, 791
Lsp1109I GCAGC 1 cut(s) 831
LweI GCATC 1 cut(s) 56
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 3 cut(s) 112, 559, 697
MalI GATC 3 cut(s) 192, 408, 471
MboI GATC 3 cut(s) 190, 406, 469
MboII GAAGA 2 cut(s) 95, 170
MflI RGATCY 1 cut(s) 190
MluCI AATT 6 cut(s) 171, 234, 351, 667, 675, 870
MmeI TCCRAC 4 cut(s) 168, 211, 324, 429
MseI TTAA 7 cut(s) 24, 68, 357, 503, 593, 630, 678
MslI CAYNNNNRTG 1 cut(s) 889
MspR9I CCNGG 1 cut(s) 772
MvaI CCWGG 1 cut(s) 772
NdeII GATC 3 cut(s) 190, 406, 469
NlaIII CATG 3 cut(s) 324, 802, 888
NlaIV GGNNCC 2 cut(s) 192, 660
NmuCI GTSAC 2 cut(s) 112, 559
NspI RCATGY 3 cut(s) 324, 802, 888
PciI ACATGT 1 cut(s) 320
PfeI GAWTC 2 cut(s) 4, 289
PkrI GCNGC 1 cut(s) 846
PscI ACATGT 1 cut(s) 320
PshAI GACNNNNGTC 1 cut(s) 323
PsiI TTATAA 2 cut(s) 98, 645
Psp6I CCWGG 1 cut(s) 770
PspGI CCWGG 1 cut(s) 770
PspN4I GGNNCC 2 cut(s) 192, 660
PspPI GGNCC 1 cut(s) 719
PsuI RGATCY 1 cut(s) 190
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 1 cut(s) 889
SaqAI TTAA 7 cut(s) 24, 68, 357, 503, 593, 630, 678
SatI GCNGC 1 cut(s) 845
Sau3AI GATC 3 cut(s) 190, 406, 469
Sau96I GGNCC 1 cut(s) 719
ScrFI CCNGG 1 cut(s) 772
SfaNI GCATC 1 cut(s) 56
SinI GGWCC 1 cut(s) 719
SmiMI CAYNNNNRTG 1 cut(s) 889
Sse9I AATT 6 cut(s) 171, 234, 351, 667, 675, 870
SspI AATATT 3 cut(s) 22, 142, 567
StyD4I CCNGG 1 cut(s) 770
TaaI ACNGT 1 cut(s) 556
TaiI ACGT 1 cut(s) 459
TaqI TCGA 1 cut(s) 472
TasI AATT 6 cut(s) 171, 234, 351, 667, 675, 870
TfiI GAWTC 2 cut(s) 4, 289
Tru1I TTAA 7 cut(s) 24, 68, 357, 503, 593, 630, 678
Tru9I TTAA 7 cut(s) 24, 68, 357, 503, 593, 630, 678
TscAI CASTG 1 cut(s) 841
TseFI GTSAC 2 cut(s) 112, 559
TseI GCWGC 1 cut(s) 844
Tsp45I GTSAC 2 cut(s) 112, 559
TspDTI ATGAA 2 cut(s) 17, 171
TspRI CASTG 1 cut(s) 841
VpaK11BI GGWCC 1 cut(s) 719
XapI RAATTY 1 cut(s) 667
XceI RCATGY 3 cut(s) 324, 802, 888
XmiI GTMKAC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.