pycom07g00720

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
615622 .. 617963
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g00720.3

Sequence Viewer

Length: 2220 bp
ATGGTGGAACGAATTCTCTACAACGTTGTGGGAGGGATCATTGAGAGGCTAGGCTCCCTTGCTTTCCAAGAGATTGGATTGATTTGGGGTGTCAAAGATGAGCTCCACAAGCTCCAGGAAACAGTTGCCGGATTCCAAGCTGTTCTTCTTGACGCTGAGCAAAAGCAAGCCATCAATGAAGTCAAACTGTGGCTCGAAAGCGTAAAAGATGCAGTTTATGAAGCCGATGACGGGTTGGATGAGTTTGATATTGAAGCACAGCGGAGACAAATGATGCGTGGCAATACTGAGGTTTCAAAGAAGGTACGCCTCTTATTCTCTAGCTCAAATCAACTTGCTTTGGGGCTAAAGATGGGTCATAAGATAAAAGATATCAATAAGAGGTTTTGTGAGATTGCATCTCATAGAACCTTTCACTTAGAAGTAAATCGTCAAGATACACGATTTATAATTAGAGAGAGGGTCACCCACTCATTTGTCCGGAAGGAAAATATTATAGGGAGAGATGAAGATAAAAAGGCAATTATCCAACTTTTGCTGGATCCCATCTCAACCGAGAACGTGTCAACCATTTCCATATTTGGATTTGGAGGATTGGGGAAAACAGCACTCGCCCAACTCATATTCAATGATGAGGTGATTCAAAATCATTTTGAGTTGAAAATATGGCTGACAAGCTTGATATGGATCAGCTGCAAAATCGATCTTAGAGAAAAAGTGGATGGAAAGAAATACCTACTTGTGTTGGATGATATGTGGAATGAGAATCGAGAAAAATGGCTCAGTTTTAAGTACTTGTTAATGGGTGGTGGAAAAAATAGTAGAATACTAATAACTACTCGTAGTGAAACCGTTGCGAAGATATCAGACACAACTAAACCATACACCTTAAGGGGTTTGAATGAAGAGCAAAGTTGGTCTTTATTTAAGGAAATGGCTTTTAAAGATGGAAAAGAGCCAGAGAATTCAACAATTAAGGCAATTGGGAAGGAAGTTGCAAGAAAATGTCAAGGAGTTCCACTCGCTATAAGGACAGTATGTGGGATGTTGTGCACCAAGCATCACGAATCAGAATGGTTGAATTTCAAAGATAAGAAACTTTCAAAAATAAGTCAAGAAGAAAATGATATTTTACCAACACTTAAACTAAGTTATGATGTGCTCCCATCACATTTGAAGCATTGTTTTGCTTACTGTAACTTGTTTCCACTTGATTATGAGATCTATGTGCCGAGAGTGATTCAACTTTGGGTGGCGCAAGGGTTAATTACGCCATCCAACGAAAACGAGTGTTTGGAGGACGTTGCATATGAATATTTCATGGATTTGTTGCGGAGATCCTTTTTTCAAGATGAAGAAAAAGATGCGTCTGGTATAATAAAAAGTTGTAAGATGCATGATCTCATGAATGAACTTGCAATCTTAGTGTCGGGGTCCAGAAGTGCCATAGTTGATCCGAATCAAAAGAATTTTTCTGAAAAGCTTTGCCATCTGTCTTTCAATTTTCATGTTGATTTGTCGAATTGGAAATTGCCAACATCCTTGCTAAAAGCAAATAAGATAAGAACTTTTCTTTTTCCTCGCCAAGAATTTTCGACTGCTGTTGAGGAGTCATTATGTAATTCATTTTGTTCTACAATTGTCTCAAATTTTAAGTCATTGCGTATATTGAGTCTCAACGTAATACGAATGACAACATTACCTAGTTGTCTTAGAAAAATGAAACATTTGAGATATCTTGATCTTAGTCATAATCCCATCAAGAGACTCCCAGATTGGATAGTTGAACTTCAAATTTTGGAAACACTAGATCTCTCTGGTTGTAATCATCTTGTGGAACTACCCAGTGGCATTGGGAAGATCGATCAACTTCAGGCATTTCAACTTGATAGATTTGCTTTGAGTACAGACAATTCCATGTTGGGAGACAATGCTGGCCTTGGTGAACTGGCGAGGCTTAATGAATTAAGGGGAGTGCTATACATTAGAAATTTGAGGCACAAGAAAGATGTGATGTCAGAATCAAATGGTGGTGCAACTCTGAAGGAGAAACAACATCTGTGTTCGTTGGGTTTATTCTGGAAACGTGGAGAAGATGTAAACGCAGTTGATGAGAAGGATATTAGCATGTCATTGGAAGTATTGCAACCCCATCCAAATCTAAACAAGTTGTCCGTGCGGTTTTATGGTGGTGTGAGGTTTGCGAGTTGGTTGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

740

Amino Acids

84.7

Weight (kDa)

7.54

Isoelectric Point (pI)

39.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000725)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 449
AccIII TCCGGA 1 cut(s) 480
AciI CCGC 3 cut(s) 262, 1333, 2179
AclI AACGTT 1 cut(s) 24
AclWI GGATC 6 cut(s) 44, 536, 549, 695, 1332, 1448
AcsI RAATTY 8 cut(s) 12, 964, 1081, 1468, 1589, 1648, 1794, 1990
AcuI CTGAAG 2 cut(s) 1856, 2063
AfaI GTAC 3 cut(s) 306, 794, 1906
AfiI CCNNNNNNNGG 1 cut(s) 231
AflII CTTAAG 1 cut(s) 889
AflIII ACRYGT 1 cut(s) 561
AjnI CCWGG 1 cut(s) 114
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
AluBI AGCT 7 cut(s) 103, 112, 140, 324, 678, 693, 1483
AluI AGCT 7 cut(s) 103, 112, 140, 324, 678, 693, 1483
Alw21I GWGCWC 3 cut(s) 105, 1055, 1164
Alw26I GTCTC 5 cut(s) 259, 1648, 1679, 1759, 1920
Alw44I GTGCAC 1 cut(s) 1051
AlwI GGATC 6 cut(s) 44, 536, 549, 695, 1332, 1448
Aor13HI TCCGGA 1 cut(s) 480
AoxI GGCC 1 cut(s) 1936
ApaLI GTGCAC 1 cut(s) 1051
ApeKI GCWGC 1 cut(s) 693
ApoI RAATTY 8 cut(s) 12, 964, 1081, 1468, 1589, 1648, 1794, 1990
ArsI GACNNNNNNTTYG 2 cut(s) 1640, 1672
Asp700I GAANNNNTTC 1 cut(s) 12
AspLEI GCGC 1 cut(s) 1258
AspS9I GGNCC 1 cut(s) 1434
AsuHPI GGTGA 3 cut(s) 457, 649, 1955
AvaII GGWCC 1 cut(s) 1434
BaeGI GKGCMC 1 cut(s) 1055
BamHI GGATCC 1 cut(s) 541
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 3 cut(s) 105, 1055, 1164
BbvI GCAGC 1 cut(s) 680
BciT130I CCWGG 1 cut(s) 116
BcoDI GTCTC 5 cut(s) 259, 1648, 1679, 1759, 1920
BfaI CTAG 4 cut(s) 50, 321, 1704, 1808
BfrI CTTAAG 1 cut(s) 889
BglII AGATCT 2 cut(s) 1221, 1810
BisI GCNGC 1 cut(s) 694
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 695
BmcAI AGTACT 1 cut(s) 794
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 1434
BmgT120I GGNCC 1 cut(s) 1434
BmiI GGNNCC 3 cut(s) 55, 543, 1435
BmrFI CCNGG 1 cut(s) 116
BmrI ACTGGG 1 cut(s) 1839
BmsI GCATC 6 cut(s) 199, 264, 407, 1069, 1354, 1383
BmuI ACTGGG 1 cut(s) 1839
BplI GAGNNNNNCTC 2 cut(s) 1005, 1037
BpmI CTGGAG 1 cut(s) 98
Bpu1102I GCTNAGC 1 cut(s) 156
Bsa29I ATCGAT 2 cut(s) 702, 1863
BsaBI GATNNNNATC 2 cut(s) 686, 1458
BsaJI CCNNGG 1 cut(s) 1939
BsaWI WCCGGW 1 cut(s) 480
BsaXI ACNNNNNCTCC 2 cut(s) 2082, 2112
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse1I ACTGG 2 cut(s) 1845, 1953
Bse3DI GCAATG 1 cut(s) 1658
Bse8I GATNNNNATC 2 cut(s) 686, 1458
BseAI TCCGGA 1 cut(s) 480
BseBI CCWGG 1 cut(s) 116
BseCI ATCGAT 2 cut(s) 702, 1863
BseDI CCNNGG 1 cut(s) 1939
BseGI GGATG 7 cut(s) 244, 727, 754, 1050, 1274, 1538, 2152
BseJI GATNNNNATC 2 cut(s) 686, 1458
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMI GCAATG 1 cut(s) 1658
BseMII CTCAG 3 cut(s) 147, 279, 796
BseNI ACTGG 2 cut(s) 1845, 1953
BseRI GAGGAG 1 cut(s) 1622
BseSI GKGCMC 1 cut(s) 1055
BseXI GCAGC 1 cut(s) 680
BshFI GGCC 1 cut(s) 1938
BshVI ATCGAT 2 cut(s) 702, 1863
BsiHKAI GWGCWC 3 cut(s) 105, 1055, 1164
BsiSI CCGG 2 cut(s) 129, 481
BslI CCNNNNNNNGG 1 cut(s) 231
BsmAI GTCTC 5 cut(s) 259, 1648, 1679, 1759, 1920
BsnI GGCC 1 cut(s) 1938
Bsp1286I GDGCHC 3 cut(s) 105, 1055, 1164
Bsp13I TCCGGA 1 cut(s) 480
Bsp1720I GCTNAGC 1 cut(s) 156
BspACI CCGC 3 cut(s) 262, 1333, 2179
BspANI GGCC 1 cut(s) 1938
BspCNI CTCAG 3 cut(s) 148, 280, 795
BspDI ATCGAT 2 cut(s) 702, 1863
BspEI TCCGGA 1 cut(s) 480
BspHI TCATGA 1 cut(s) 1404
BspLI GGNNCC 3 cut(s) 55, 543, 1435
BspPI GGATC 6 cut(s) 44, 536, 549, 695, 1332, 1448
BspQI GCTCTTC 1 cut(s) 900
BspTI CTTAAG 1 cut(s) 889
BsrDI GCAATG 1 cut(s) 1658
BsrI ACTGG 2 cut(s) 1845, 1953
BssECI CCNNGG 1 cut(s) 1939
BssT1I CCWWGG 1 cut(s) 1939
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 5 cut(s) 124, 189, 853, 1036, 1196
Bst6I CTCTTC 1 cut(s) 900
BstAFI CTTAAG 1 cut(s) 889
BstC8I GCNNGC 2 cut(s) 168, 1936
BstDEI CTNAG 9 cut(s) 156, 288, 418, 707, 782, 1148, 1423, 1712, 1745
BstEII GGTNACC 1 cut(s) 463
BstF5I GGATG 7 cut(s) 244, 727, 754, 1050, 1274, 1538, 2152
BstHHI GCGC 1 cut(s) 1258
BstMAI GTCTC 5 cut(s) 259, 1648, 1679, 1759, 1920
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstNI CCWGG 1 cut(s) 116
BstNSI RCATGY 1 cut(s) 2131
BstPI GGTNACC 1 cut(s) 463
BstSCI CCNGG 1 cut(s) 114
BstSLI GKGCMC 1 cut(s) 1055
BstV1I GCAGC 1 cut(s) 680
BstX2I RGATCY 4 cut(s) 541, 1221, 1337, 1810
BstXI CCANNNNNNTGG 1 cut(s) 74
BstYI RGATCY 4 cut(s) 541, 1221, 1337, 1810
Bsu15I ATCGAT 2 cut(s) 702, 1863
BsuRI GGCC 1 cut(s) 1938
BsuTUI ATCGAT 2 cut(s) 702, 1863
BtsCI GGATG 7 cut(s) 244, 727, 754, 1050, 1274, 1538, 2152
BtsIMutI CAGTG 1 cut(s) 1852
Cac8I GCNNGC 2 cut(s) 168, 1936
CciI TCATGA 1 cut(s) 1404
CfoI GCGC 1 cut(s) 1258
Cfr13I GGNCC 1 cut(s) 1434
ClaI ATCGAT 2 cut(s) 702, 1863
CseI GACGC 2 cut(s) 161, 1356
Csp6I GTAC 3 cut(s) 305, 793, 1905
CviAII CATG 6 cut(s) 1321, 1397, 1405, 1508, 1918, 2128
CviQI GTAC 3 cut(s) 305, 793, 1905
DdeI CTNAG 9 cut(s) 156, 288, 418, 707, 782, 1148, 1423, 1712, 1745
DraI TTTAAA 1 cut(s) 943
Eam1104I CTCTTC 1 cut(s) 900
EarI CTCTTC 1 cut(s) 900
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 1939
Eco24I GRGCYC 1 cut(s) 105
Eco32I GATATC 3 cut(s) 373, 864, 1736
Eco47I GGWCC 1 cut(s) 1434
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 2 cut(s) 1856, 2063
Eco91I GGTNACC 1 cut(s) 463
EcoICRI GAGCTC 1 cut(s) 103
EcoO65I GGTNACC 1 cut(s) 463
EcoRI GAATTC 2 cut(s) 12, 964
EcoRII CCWGG 1 cut(s) 114
EcoRV GATATC 3 cut(s) 373, 864, 1736
EcoT14I CCWWGG 1 cut(s) 1939
EcoT22I ATGCAT 1 cut(s) 1398
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 1939
FaeI CATG 6 cut(s) 1324, 1400, 1408, 1511, 1921, 2131
FalI AAGNNNNNCTT 4 cut(s) 129, 161, 904, 936
FatI CATG 6 cut(s) 1320, 1396, 1404, 1507, 1917, 2127
FauNDI CATATG 1 cut(s) 1309
Fnu4HI GCNGC 1 cut(s) 694
FokI GGATG 7 cut(s) 251, 734, 761, 1057, 1261, 1525, 2139
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 694
FspBI CTAG 4 cut(s) 50, 321, 1704, 1808
GlaI GCGC 1 cut(s) 1257
GluI GCNGC 1 cut(s) 694
GsuI CTGGAG 1 cut(s) 98
HaeIII GGCC 1 cut(s) 1938
HapII CCGG 2 cut(s) 129, 481
HgaI GACGC 2 cut(s) 161, 1356
HhaI GCGC 1 cut(s) 1258
Hin1II CATG 6 cut(s) 1324, 1400, 1408, 1511, 1921, 2131
Hin6I GCGC 1 cut(s) 1256
HinP1I GCGC 1 cut(s) 1256
HincII GTYRAC 1 cut(s) 567
HindII GTYRAC 1 cut(s) 567
HindIII AAGCTT 2 cut(s) 676, 1481
HpaII CCGG 2 cut(s) 129, 481
HphI GGTGA 3 cut(s) 457, 649, 1955
Hpy166II GTNNAC 4 cut(s) 567, 1053, 1946, 2101
Hpy188I TCNGA 6 cut(s) 868, 1072, 1458, 1477, 2020, 2043
Hpy8I GTNNAC 4 cut(s) 567, 1053, 1946, 2101
HpyAV CCTTC 5 cut(s) 295, 478, 982, 2038, 2110
HpyCH4III ACNGT 5 cut(s) 124, 189, 853, 1036, 1196
HpyCH4IV ACGT 5 cut(s) 24, 561, 1302, 1680, 2086
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 9 cut(s) 156, 288, 418, 707, 782, 1148, 1423, 1712, 1745
HpySE526I ACGT 5 cut(s) 24, 561, 1302, 1680, 2086
Hsp92II CATG 6 cut(s) 1324, 1400, 1408, 1511, 1921, 2131
HspAI GCGC 1 cut(s) 1256
Kpn2I TCCGGA 1 cut(s) 480
LguI GCTCTTC 1 cut(s) 900
LmnI GCTCC 4 cut(s) 59, 108, 117, 1167
Lsp1109I GCAGC 1 cut(s) 680
LweI GCATC 6 cut(s) 199, 264, 407, 1069, 1354, 1383
MaeI CTAG 4 cut(s) 50, 321, 1704, 1808
MaeII ACGT 5 cut(s) 24, 561, 1302, 1680, 2086
MaeIII GTNAC 2 cut(s) 463, 1196
MboII GAAGA 8 cut(s) 137, 521, 871, 917, 1130, 1367, 1870, 2105
MfeI CAATTG 2 cut(s) 981, 1638
MflI RGATCY 4 cut(s) 541, 1221, 1337, 1810
MhlI GDGCHC 3 cut(s) 105, 1055, 1164
MlyI GAGTC 3 cut(s) 1619, 1681, 1761
MmeI TCCRAC 4 cut(s) 216, 553, 726, 1302
Mph1103I ATGCAT 1 cut(s) 1398
MroI TCCGGA 1 cut(s) 480
MroXI GAANNNNTTC 1 cut(s) 12
MspA1I CMGCKG 2 cut(s) 262, 693
MspCI CTTAAG 1 cut(s) 889
MspI CCGG 2 cut(s) 129, 481
MspR9I CCNGG 1 cut(s) 116
MunI CAATTG 2 cut(s) 981, 1638
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 109
NdeI CATATG 1 cut(s) 1309
NlaIII CATG 6 cut(s) 1324, 1400, 1408, 1511, 1921, 2131
NlaIV GGNNCC 3 cut(s) 55, 543, 1435
NmeAIII GCCGAG 1 cut(s) 1257
NmuCI GTSAC 1 cut(s) 463
NsiI ATGCAT 1 cut(s) 1398
NspI RCATGY 1 cut(s) 2131
PagI TCATGA 1 cut(s) 1404
PciSI GCTCTTC 1 cut(s) 900
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 7 cut(s) 132, 640, 766, 1067, 1240, 1459, 2021
PfoI TCCNGGA 1 cut(s) 114
PkrI GCNGC 1 cut(s) 695
PleI GAGTC 3 cut(s) 1618, 1680, 1761
PpsI GAGTC 3 cut(s) 1618, 1680, 1761
PsiI TTATAA 1 cut(s) 449
Psp124BI GAGCTC 1 cut(s) 105
Psp1406I AACGTT 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 114
PspEI GGTNACC 1 cut(s) 463
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 3 cut(s) 55, 543, 1435
PspPI GGNCC 1 cut(s) 1434
PsuI RGATCY 4 cut(s) 541, 1221, 1337, 1810
PvuII CAGCTG 1 cut(s) 693
RsaI GTAC 3 cut(s) 306, 794, 1906
RsaNI GTAC 3 cut(s) 305, 793, 1905
SacI GAGCTC 1 cut(s) 105
SapI GCTCTTC 1 cut(s) 900
SatI GCNGC 1 cut(s) 694
Sau96I GGNCC 1 cut(s) 1434
ScaI AGTACT 1 cut(s) 794
SchI GAGTC 3 cut(s) 1619, 1681, 1761
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 3 cut(s) 105, 1055, 1164
SfaNI GCATC 6 cut(s) 199, 264, 407, 1069, 1354, 1383
SinI GGWCC 1 cut(s) 1434
SmlI CTYRAG 1 cut(s) 889
SmoI CTYRAG 1 cut(s) 889
SsiI CCGC 3 cut(s) 262, 1333, 2179
SspI AATATT 2 cut(s) 493, 1316
SspMI CTAG 4 cut(s) 50, 321, 1704, 1808
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 1939
TaaI ACNGT 5 cut(s) 124, 189, 853, 1036, 1196
TaiI ACGT 5 cut(s) 27, 564, 1305, 1683, 2089
TaqI TCGA 6 cut(s) 195, 702, 769, 1520, 1595, 1863
TatI WGTACW 2 cut(s) 792, 1904
TfiI GAWTC 7 cut(s) 132, 640, 766, 1067, 1240, 1459, 2021
TscAI CASTG 1 cut(s) 1852
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 1 cut(s) 693
Tsp45I GTSAC 1 cut(s) 463
TspGWI ACGGA 1 cut(s) 2164
TspRI CASTG 1 cut(s) 1852
Vha464I CTTAAG 1 cut(s) 889
VneI GTGCAC 1 cut(s) 1051
VpaK11BI GGWCC 1 cut(s) 1434
XapI RAATTY 8 cut(s) 12, 964, 1081, 1468, 1589, 1648, 1794, 1990
XceI RCATGY 1 cut(s) 2131
XmnI GAANNNNTTC 1 cut(s) 12
XspI CTAG 4 cut(s) 50, 321, 1704, 1808
ZrmI AGTACT 1 cut(s) 794
Zsp2I ATGCAT 1 cut(s) 1398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.