MD03G1279600.v1.1

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
36122812 .. 36126183
3372 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1279600.v1.1.491

Sequence Viewer

Length: 3372 bp
ATGGCGGAAGGAGTTCTCTTCAACGTTGCAGCACGAATCATCGGAGGGCTAGGCTCCCTTGCTTTCCAAGAGATCGGATTAATTTGGGGTGTCCAAGATGAGCTCCACAAGCTCAAGGAGATAGTTGCCGGATTCCAAGGTGTTCTTCTTGACGCTGAGCAAAAGCAAACCAACAATGAAGTCAAACTGTGGCTCAAAAGCGTAGAAGATGCAGTTTATGAAGCCGATGACTTGCTGGATGAGTTTAATACTGAAGCTCTGCAGAGACAAATGATGTGTGACAATACTAAGATGTCAAAGAAGGTACGCCTCTTCTTCTCTAGCTCAAATCAACTTGCTTTCCGGCTAAAGATGAGTCATAAGATAAAAGATATAAACAAGAGGCTTCATGAGGTTGCATCTCGTAGAGCCTTTCACTTGGAAATAAATCGTGAAGATACACGATTTATAATTAGAGAGAGGATCACTCACTCATTTGTCCCTAAGGAAAATGTTATAGGGAGAGATGAAGATAAAAATGCAATTATTCAACTTTTGTTGGATCACATCTCAACTGAGAATGTGTCAACCATTTCCATAGTTGGATTTGGAGGATTGGGGAAAACTGCTCTTGCCCAACTCATATTCAACGATGAGGTGATTCAAAATCATTTTGAGTTGAAAATATGGTCATGTATCTCTAATGTATTTGAGTTGGATATAGTCGTTAAGAAAATACTAAAAGTTGACAAGATTGATATGGATGAGCTGCAAAATGATCTTAGAAGAAAAGTAGATGGGAAGAAATATCTAATTGTGTTGGATGATGTGTGGAATGAGAATCGGGAGAAATGGCTTAGCTTGAAGTACTTGTTAATGGGGGGTGGAAAAGGTAGTAGAATACTGATAACCACTCGTAGTGAAGCGGTTGCGACGATATCAGACACAACTAAACCATACACCTTAAGGGGTTTGAATCAAGAGGACAGTTGGTCTTTATTTAAGGAAATGGCTTTTAAAGATGGAAAAGAGCCAGAGAATTCAACAATTAAGGCAATTGGGAAGGAGGTTGCAAGAAAATGTCAAGGAGTTCCACTCGCTATAAGGACAATAGGTGGGATGTTGCGCACCAAATATCACGAAACAGAATGGTTGAATTTCAAAGAAAATAAACTTTCAAGAATAAATCAGGAAGAAAATGAAATTTTACCAACACTTAAACTAAGTTATGATGTGCTCCCATCACATTTGAAGCATTGTTTTGCTTACTGTAGCTTGTTTCCACCTGATTATGAGATCTCTGTACCGATGTTGATTAGACTTTGGGTGGCGCAAGGGTTCATTAAGTCATCCGATGAAAACGAGAGTTTGGAGGATGTTGCGTATGAATATTATATGGAATTGTTGTGCAGATCGTTTTTTCAAGAAGAAAAAGATGAGTTTGGAAGAATAAAAAGTTGTAAAATGCACGATCTCATGAATGAACTTGCAATATTAGTGTCGGGGGTCGGAAGCACCGTTGTTGATCGGAACCAAAAAAAATTTCATGAAAAGCTTTGTCATGTATCTTTCAATTTTCATGTTCATCTGTTGAAATGGGAAGTGCCAACTTCCTTGCTAAAAGCGAAAAAGATACGAACCTTTCTTCTTCCTTGCCAAGAGTATAGAAGTTTTTCAGTAAAGAATTCATCTTGTGCTACAATTATTTCAAATTTTAAGTCATTGCGTATGCTGAGTCTCAACGACTTTGGAATTACAAAATTACCTAATTGTCTTAAAAAAGTGAAACATTTGAGATATCTTGATCTTACTGGTAATCCCATCGAGAGAATTCCAGATTCGATAGTTGGACTTTCGAATTTGGAAACACTTGATCTCTCTTACTGCCGGAAGCTTATGGAATTGCCTAGAGACATAAAAAAAATGATAAACTTAAGGTATCTCATCTTGGAAGGCTGTGATAAATTGACTCGAATGCCACGTGGATTGGGGGAGCTGACCGGTCTTCGTACATTGGATAAATTTGTTTTAAGCGAAAACAATTCTTTGTTGAGGGACAGTGCTGGTCTTGGTGAACTGGGAAAGCTTAGGGAATTAAGGGGACAGTTAGAAATTATAAATTTGAGGCAGGAGAAAGATGTGATGTCAGATTCAAATGTTGGTACACCTCTCATGGAGAAACAGCATCTCCATTCATTGACTTTAGACTGGAAACGTGGAGAAGATGTAAACGCAGTTGATGAGAAGGATATTATAATGTCAATGGAAGTGTTGCAACCCCATTCAAATCTAAAGATGTTGTCCGTGTCTGATTATGGTGGTGTGAGGTTTGCGAGTTGGTTTTCTTCTCTCATAAATCTTGTTGATCTCACATTGACTGGGTGTCATAGATGCCAACATCTTCCACCCTTGGATCATTTCCCATCCCTCAAGTCTCTTCAACTTGAAGGGTTTGAGAAGTTGGAGTACATATCAGACGATACCAGCAGCAGTAATAGTATGAGTGATGAGATGATGACGTCCCTGGAGTTCCTCTGCTTATCCGATTGCCCTGTTCTGAAGGGATGGTGGAGGGCGCACACTCATAACAATGCTTCTTCTTCTTCATCAACGGAAAATCTGTCGTTGCCTTCTTTTCCCTGTCTTTCTACATTGCAGATCTGGGATTGTCCTAATCTAACTTCCATGCCTCTGTATCCAAATGTGGAGGGAATAGATCTCAATGGGTGCAGCTGGAAGGTTGTTGATTCCTTGTTTGGTAGAGGAGCATCTGATATTACACATGATGTTGGTGTTGATGTCTCTGCCTCTTCTTCCTCCCCTCATCTCTCCAAATTAACACGTCTGTCACTCATTAAAATTGAGGATTTGGAATGTCTAACGTCACAAGGAATGGGCAACATCCCATCACTCCAATCGCTTTACATTAGAGATTGCCCAAATTTGGCATTACTACCATATCATGGGATGGGCAACCTCGCATCCTTTCGGGAGCTTACAGTTAGAAATCGCTCCAATTTGACATCAATGTTAAGAGGGATCGCCAATCTTACATCACTTCAGGAGCTTGCAATTGGAGATTGCTCTAATCTGACATTACCGCCAGAAGTGGTCGTCGTCAACCTCCCATCACTCCAATCGCTTACGATTACATCTTTCCCAAAGTTGGTATCACTACCGGAAGAAATAAGCAATCTCACGTCACTGCAGCACCTTGCAATTGAATTTTGCCCAAATTTGGCATCACTGCCAAAAGGGATTCGTCGACTCCCCAACTTAAATAGATTGCGAATATGGGAGTGCTCCATGTTAAGCGAAAGATGCGAGGAGGAAACAGGTGAGGATTGGCCTAAGATTGCTCACATCCCATCCATTTCTTTTCATAGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1124

Amino Acids

127.42

Weight (kDa)

6.2

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 13 - 97 2.2e-20 Rx N-terminal domain
NB-ARC PF00931 170 - 334 3.8e-30 NB-ARC domain
WHD_DRP PF23559 419 - 490 1.4e-25 Disease resistance protein Winged helix domain
LRR_14 PF23598 549 - 846 2.9e-28 Leucine-rich repeat region
LRR_4 PF12799 566 - 605 4.3e-06 Leucine Rich repeats (2 copies)
LRR_R13L1-DRL21 PF25019 683 - 810 2.2e-31 R13L1/DRL21 LRRs
LRR_14 PF23598 963 - 1115 1.3e-11 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000725)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 449, 2096, 2234
AatII GACGTC 1 cut(s) 2501
Acc16I TGCGCA 1 cut(s) 1106
AccB7I CCANNNNNTGG 1 cut(s) 2942
AccI GTMKAC 1 cut(s) 3244
AciI CCGC 3 cut(s) 5, 905, 3080
AclI AACGTT 1 cut(s) 24
AclWI GGATC 4 cut(s) 470, 549, 2400, 3026
AcuI CTGAAG 3 cut(s) 273, 2558, 3023
AcvI CACGTG 1 cut(s) 1961
AcyI GRCGYC 1 cut(s) 2498
AfaI GTAC 6 cut(s) 306, 848, 1284, 1990, 2143, 2447
AfiI CCNNNNNNNGG 4 cut(s) 2923, 2942, 3145, 3217
AflII CTTAAG 2 cut(s) 943, 1912
AflIII ACRYGT 1 cut(s) 2819
AgeI ACCGGT 1 cut(s) 1979
AhdI GACNNNNNGTC 2 cut(s) 970, 2361
AjiI CACGTC 2 cut(s) 2822, 3180
AjnI CCWGG 1 cut(s) 2502
AjuI GAANNNNNNNTTGG 4 cut(s) 129, 161, 1506, 1538
Alw21I GWGCWC 3 cut(s) 105, 1218, 3284
Alw26I GTCTC 5 cut(s) 259, 1721, 1884, 2418, 2785
AlwI GGATC 4 cut(s) 470, 549, 2400, 3026
AoxI GGCC 1 cut(s) 3326
ApeKI GCWGC 5 cut(s) 29, 748, 2466, 2709, 3187
ArsI GACNNNNNNTTYG 2 cut(s) 1682, 1714
AseI ATTAAT 1 cut(s) 80
AsiGI ACCGGT 1 cut(s) 1979
Asp700I GAANNNNTTC 2 cut(s) 12, 1651
AspLEI GCGC 3 cut(s) 1107, 1312, 2557
AsuHPI GGTGA 3 cut(s) 649, 2063, 3329
AsuII TTCGAA 1 cut(s) 1835
AxyI CCTNAGG 1 cut(s) 483
BanII GRGCYC 1 cut(s) 105
BarI GAAGNNNNNNTAC 2 cut(s) 2429, 2461
BbrPI CACGTG 1 cut(s) 1961
BbsI GAAGAC 1 cut(s) 1976
Bbv12I GWGCWC 3 cut(s) 105, 1218, 3284
BbvI GCAGC 5 cut(s) 41, 735, 2478, 2721, 3199
BciT130I CCWGG 1 cut(s) 2504
BciVI GTATCC 1 cut(s) 2685
BcoDI GTCTC 5 cut(s) 259, 1721, 1884, 2418, 2785
BfaI CTAG 3 cut(s) 50, 321, 1887
BfmI CTRYAG 3 cut(s) 260, 1249, 3185
BfrI CTTAAG 2 cut(s) 943, 1912
BfuI GTATCC 1 cut(s) 2685
BglII AGATCT 3 cut(s) 1275, 2637, 2695
BisI GCNGC 5 cut(s) 30, 749, 2467, 2710, 3188
BlpI GCTNAGC 2 cut(s) 156, 836
BlsI GCNGC 5 cut(s) 31, 750, 2468, 2711, 3189
BmcAI AGTACT 1 cut(s) 848
Bme1390I CCNGG 1 cut(s) 2504
BmeRI GACNNNNNGTC 2 cut(s) 970, 2361
BmgBI CACGTC 2 cut(s) 2822, 3180
BmiI GGNNCC 2 cut(s) 55, 1511
BmrFI CCNGG 1 cut(s) 2504
BmrI ACTGGG 2 cut(s) 2066, 2367
BmsI GCATC 8 cut(s) 199, 407, 2173, 2360, 2756, 2969, 3230, 3290
BmuI ACTGGG 2 cut(s) 2066, 2367
BpiI GAAGAC 1 cut(s) 1976
BplI GAGNNNNNCTC 4 cut(s) 451, 483, 1059, 1091
BpmI CTGGAG 1 cut(s) 2525
Bpu10I CCTNAGC 1 cut(s) 2066
Bpu1102I GCTNAGC 2 cut(s) 156, 836
Bpu14I TTCGAA 1 cut(s) 1835
BpuEI CTTGAG 2 cut(s) 98, 2393
BsaAI YACGTR 1 cut(s) 1961
BsaHI GRCGYC 1 cut(s) 2498
BsaJI CCNNGG 3 cut(s) 136, 2388, 2502
BsaWI WCCGGW 2 cut(s) 1979, 3157
BsaXI ACNNNNNCTCC 4 cut(s) 2151, 2181, 2190, 2220
Bsc4I CCNNNNNNNGG 4 cut(s) 2923, 2942, 3145, 3217
Bse118I RCCGGY 1 cut(s) 1979
Bse1I ACTGG 4 cut(s) 1795, 2061, 2192, 2362
Bse21I CCTNAGG 1 cut(s) 483
Bse3DI GCAATG 2 cut(s) 1700, 2630
BseBI CCWGG 1 cut(s) 2504
BseDI CCNNGG 3 cut(s) 136, 2388, 2502
BseLI CCNNNNNNNGG 4 cut(s) 2923, 2942, 3145, 3217
BseMI GCAATG 2 cut(s) 1700, 2630
BseMII CTCAG 3 cut(s) 147, 546, 1703
BseNI ACTGG 4 cut(s) 1795, 2061, 2192, 2362
BseRI GAGGAG 2 cut(s) 2757, 3320
BseXI GCAGC 5 cut(s) 41, 735, 2478, 2721, 3199
BsgI GTGCAG 2 cut(s) 1408, 2728
BshFI GGCC 1 cut(s) 3328
BshTI ACCGGT 1 cut(s) 1979
BsiHKAI GWGCWC 3 cut(s) 105, 1218, 3284
BsiSI CCGG 5 cut(s) 129, 343, 1867, 1980, 3158
BslFI GGGAC 4 cut(s) 464, 2048, 2094, 2485
BslI CCNNNNNNNGG 4 cut(s) 2923, 2942, 3145, 3217
BsmAI GTCTC 5 cut(s) 259, 1721, 1884, 2418, 2785
BsmFI GGGAC 4 cut(s) 464, 2048, 2094, 2485
BsmI GAATGC 1 cut(s) 1959
BsnI GGCC 1 cut(s) 3328
Bsp119I TTCGAA 1 cut(s) 1835
Bsp1286I GDGCHC 3 cut(s) 105, 1218, 3284
Bsp1720I GCTNAGC 2 cut(s) 156, 836
BspACI CCGC 3 cut(s) 5, 905, 3080
BspANI GGCC 1 cut(s) 3328
BspCNI CTCAG 3 cut(s) 148, 547, 1704
BspHI TCATGA 3 cut(s) 388, 1455, 1525
BspLI GGNNCC 2 cut(s) 55, 1511
BspMAI CTGCAG 2 cut(s) 264, 3189
BspPI GGATC 4 cut(s) 470, 549, 2400, 3026
BspT104I TTCGAA 1 cut(s) 1835
BspTI CTTAAG 2 cut(s) 943, 1912
BsrDI GCAATG 2 cut(s) 1700, 2630
BsrFI RCCGGY 1 cut(s) 1979
BsrI ACTGG 4 cut(s) 1795, 2061, 2192, 2362
BssAI RCCGGY 1 cut(s) 1979
BssECI CCNNGG 3 cut(s) 136, 2388, 2502
BssNI GRCGYC 1 cut(s) 2498
BssT1I CCWWGG 2 cut(s) 136, 2388
Bst2UI CCWGG 1 cut(s) 2504
Bst4CI ACNGT 7 cut(s) 189, 968, 1250, 1498, 2039, 2085, 2980
Bst6I CTCTTC 4 cut(s) 23, 317, 2421, 2794
BstACI GRCGYC 1 cut(s) 2498
BstAFI CTTAAG 2 cut(s) 943, 1912
BstBAI YACGTR 1 cut(s) 1961
BstBI TTCGAA 1 cut(s) 1835
BstC8I GCNNGC 1 cut(s) 3048
BstHHI GCGC 3 cut(s) 1107, 1312, 2557
BstMAI GTCTC 5 cut(s) 259, 1721, 1884, 2418, 2785
BstMWI GCNNNNNNNGC 2 cut(s) 109, 3300
BstNI CCWGG 1 cut(s) 2504
BstSCI CCNGG 1 cut(s) 2502
BstSFI CTRYAG 3 cut(s) 260, 1249, 3185
BstV1I GCAGC 5 cut(s) 41, 735, 2478, 2721, 3199
BstV2I GAAGAC 1 cut(s) 1976
BstX2I RGATCY 3 cut(s) 1275, 2637, 2695
BstYI RGATCY 3 cut(s) 1275, 2637, 2695
Bsu36I CCTNAGG 1 cut(s) 483
BsuI GTATCC 1 cut(s) 2685
BsuRI GGCC 1 cut(s) 3328
BtrI CACGTC 2 cut(s) 2822, 3180
BtsI GCAGTG 2 cut(s) 3182, 3224
BtsIMutI CAGTG 3 cut(s) 2044, 3182, 3224
Cac8I GCNNGC 1 cut(s) 3048
CciI TCATGA 3 cut(s) 388, 1455, 1525
CfoI GCGC 3 cut(s) 1107, 1312, 2557
Cfr10I RCCGGY 1 cut(s) 1979
CseI GACGC 1 cut(s) 161
Csp6I GTAC 6 cut(s) 305, 847, 1283, 1989, 2142, 2446
CspAI ACCGGT 1 cut(s) 1979
CspCI CAANNNNNGTGG 2 cut(s) 1947, 1982
CviQI GTAC 6 cut(s) 305, 847, 1283, 1989, 2142, 2446
DraI TTTAAA 1 cut(s) 997
DriI GACNNNNNGTC 2 cut(s) 970, 2361
Eam1104I CTCTTC 4 cut(s) 23, 317, 2421, 2794
Eam1105I GACNNNNNGTC 2 cut(s) 970, 2361
EarI CTCTTC 4 cut(s) 23, 317, 2421, 2794
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 2 cut(s) 136, 2388
Eco24I GRGCYC 1 cut(s) 105
Eco32I GATATC 2 cut(s) 918, 1778
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 3 cut(s) 273, 2558, 3023
Eco72I CACGTG 1 cut(s) 1961
Eco81I CCTNAGG 1 cut(s) 483
EcoICRI GAGCTC 1 cut(s) 103
EcoRI GAATTC 3 cut(s) 1018, 1663, 1809
EcoRII CCWGG 1 cut(s) 2502
EcoRV GATATC 2 cut(s) 918, 1778
EcoT14I CCWWGG 2 cut(s) 136, 2388
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 2 cut(s) 136, 2388
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 4 cut(s) 464, 2048, 2094, 2485
FblI GTMKAC 1 cut(s) 3244
Fnu4HI GCNGC 5 cut(s) 30, 749, 2467, 2710, 3188
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 5 cut(s) 30, 749, 2467, 2710, 3188
FspBI CTAG 3 cut(s) 50, 321, 1887
FspI TGCGCA 1 cut(s) 1106
GlaI GCGC 3 cut(s) 1106, 1311, 2556
GluI GCNGC 5 cut(s) 30, 749, 2467, 2710, 3188
GsuI CTGGAG 1 cut(s) 2525
HaeIII GGCC 1 cut(s) 3328
HapII CCGG 5 cut(s) 129, 343, 1867, 1980, 3158
HgaI GACGC 1 cut(s) 161
HhaI GCGC 3 cut(s) 1107, 1312, 2557
Hin1I GRCGYC 1 cut(s) 2498
Hin6I GCGC 3 cut(s) 1105, 1310, 2555
HinP1I GCGC 3 cut(s) 1105, 1310, 2555
HincII GTYRAC 4 cut(s) 567, 727, 3100, 3245
HindII GTYRAC 4 cut(s) 567, 727, 3100, 3245
HindIII AAGCTT 3 cut(s) 1532, 1871, 2063
HpaII CCGG 5 cut(s) 129, 343, 1867, 1980, 3158
HphI GGTGA 3 cut(s) 649, 2063, 3329
Hpy166II GTNNAC 7 cut(s) 567, 727, 2054, 2144, 2209, 3100, 3245
Hpy8I GTNNAC 7 cut(s) 567, 727, 2054, 2144, 2209, 3100, 3245
Hpy99I CGWCG 3 cut(s) 916, 3098, 3246
HpyAV CCTTC 8 cut(s) 295, 1036, 1925, 2218, 2420, 2533, 2619, 2710
HpyCH4III ACNGT 7 cut(s) 189, 968, 1250, 1498, 2039, 2085, 2980
HpyCH4IV ACGT 7 cut(s) 24, 1960, 2194, 2498, 2821, 2861, 3179
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 3300
HpySE526I ACGT 7 cut(s) 24, 1960, 2194, 2498, 2821, 2861, 3179
Hsp92I GRCGYC 1 cut(s) 2498
HspAI GCGC 3 cut(s) 1105, 1310, 2555
LmnI GCTCC 9 cut(s) 59, 108, 1221, 1972, 2744, 2971, 2996, 3043, 3287
Lsp1109I GCAGC 5 cut(s) 41, 735, 2478, 2721, 3199
LweI GCATC 8 cut(s) 199, 407, 2173, 2360, 2756, 2969, 3230, 3290
MaeI CTAG 3 cut(s) 50, 321, 1887
MaeII ACGT 7 cut(s) 24, 1960, 2194, 2498, 2821, 2861, 3179
MaeIII GTNAC 4 cut(s) 278, 2826, 2862, 3180
MfeI CAATTG 3 cut(s) 1035, 3051, 3198
MflI RGATCY 3 cut(s) 1275, 2637, 2695
MhlI GDGCHC 3 cut(s) 105, 1218, 3284
MlyI GAGTC 4 cut(s) 364, 1723, 1942, 3240
MmeI TCCRAC 7 cut(s) 519, 562, 675, 780, 1468, 1807, 2421
MroXI GAANNNNTTC 2 cut(s) 12, 1651
MslI CAYNNNNRTG 1 cut(s) 2568
MspA1I CMGCKG 1 cut(s) 2712
MspCI CTTAAG 2 cut(s) 943, 1912
MspI CCGG 5 cut(s) 129, 343, 1867, 1980, 3158
MspR9I CCNGG 1 cut(s) 2504
MunI CAATTG 3 cut(s) 1035, 3051, 3198
Mva1269I GAATGC 1 cut(s) 1959
MvaI CCWGG 1 cut(s) 2504
MwoI GCNNNNNNNGC 2 cut(s) 109, 3300
NlaIV GGNNCC 2 cut(s) 55, 1511
NmuCI GTSAC 4 cut(s) 278, 2826, 2862, 3180
NsbI TGCGCA 1 cut(s) 1106
NspV TTCGAA 1 cut(s) 1835
PagI TCATGA 3 cut(s) 388, 1455, 1525
PcsI WCGNNNNNNNCGW 2 cut(s) 1494, 1957
PctI GAATGC 1 cut(s) 1959
PdmI GAANNNNTTC 2 cut(s) 12, 1651
PfeI GAWTC 9 cut(s) 36, 132, 640, 820, 955, 1817, 2129, 2726, 3238
PflMI CCANNNNNTGG 1 cut(s) 2942
PinAI ACCGGT 1 cut(s) 1979
PkrI GCNGC 5 cut(s) 31, 750, 2468, 2711, 3189
PleI GAGTC 4 cut(s) 363, 1722, 1942, 3240
PmaCI CACGTG 1 cut(s) 1961
PmlI CACGTG 1 cut(s) 1961
PpsI GAGTC 4 cut(s) 363, 1722, 1942, 3240
Ppu21I YACGTR 1 cut(s) 1961
PshBI ATTAAT 1 cut(s) 80
PsiI TTATAA 3 cut(s) 449, 2096, 2234
Psp124BI GAGCTC 1 cut(s) 105
Psp1406I AACGTT 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 2502
PspCI CACGTG 1 cut(s) 1961
PspGI CCWGG 1 cut(s) 2502
PspN4I GGNNCC 2 cut(s) 55, 1511
PstI CTGCAG 2 cut(s) 264, 3189
PsuI RGATCY 3 cut(s) 1275, 2637, 2695
PvuII CAGCTG 1 cut(s) 2712
RsaI GTAC 6 cut(s) 306, 848, 1284, 1990, 2143, 2447
RsaNI GTAC 6 cut(s) 305, 847, 1283, 1989, 2142, 2446
RseI CAYNNNNRTG 1 cut(s) 2568
SacI GAGCTC 1 cut(s) 105
SalI GTCGAC 1 cut(s) 3243
SatI GCNGC 5 cut(s) 30, 749, 2467, 2710, 3188
ScaI AGTACT 1 cut(s) 848
SchI GAGTC 4 cut(s) 364, 1723, 1942, 3240
ScrFI CCNGG 1 cut(s) 2504
SduI GDGCHC 3 cut(s) 105, 1218, 3284
SfaNI GCATC 8 cut(s) 199, 407, 2173, 2360, 2756, 2969, 3230, 3290
SfcI CTRYAG 3 cut(s) 260, 1249, 3185
SfuI TTCGAA 1 cut(s) 1835
SmiMI CAYNNNNRTG 1 cut(s) 2568
SmlI CTYRAG 4 cut(s) 113, 943, 1912, 2408
SmoI CTYRAG 4 cut(s) 113, 943, 1912, 2408
SsiI CCGC 3 cut(s) 5, 905, 3080
SspI AATATT 2 cut(s) 1370, 1473
SspMI CTAG 3 cut(s) 50, 321, 1887
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 2502
StyI CCWWGG 2 cut(s) 136, 2388
TaaI ACNGT 7 cut(s) 189, 968, 1250, 1498, 2039, 2085, 2980
TaiI ACGT 7 cut(s) 27, 1963, 2197, 2501, 2824, 2864, 3182
TaqI TCGA 5 cut(s) 1803, 1820, 1835, 1951, 3244
TatI WGTACW 2 cut(s) 846, 2445
TfiI GAWTC 9 cut(s) 36, 132, 640, 820, 955, 1817, 2129, 2726, 3238
TscAI CASTG 3 cut(s) 2044, 3189, 3231
TseFI GTSAC 4 cut(s) 278, 2826, 2862, 3180
TseI GCWGC 5 cut(s) 29, 748, 2466, 2709, 3187
Tsp45I GTSAC 4 cut(s) 278, 2826, 2862, 3180
TspGWI ACGGA 2 cut(s) 2272, 2606
TspRI CASTG 3 cut(s) 2044, 3189, 3231
Van91I CCANNNNNTGG 1 cut(s) 2942
Vha464I CTTAAG 2 cut(s) 943, 1912
VspI ATTAAT 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 3244
XmnI GAANNNNTTC 2 cut(s) 12, 1651
XspI CTAG 3 cut(s) 50, 321, 1887
ZraI GACGTC 1 cut(s) 2499
ZrmI AGTACT 1 cut(s) 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.