pycom07g01890

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
1468935 .. 1469284
350 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g01890.2

Sequence Viewer

Length: 309 bp
ATGGCGGAAGGAGTTCTCTTCAACATTGCGGGAGGGATCATTGAGAGGCTAGGCTCCCTAGCTTTCCAAGAGATTGGATCGATTTGGGGTGTCCAAGACGAGTTCCAGAAGCTCAAAGAGACAGTGGCCAGATTCCAAGCTGTTCTTCTTGACGCTGAGCAAAAGCAAGCCAACAATGAAGTCAAACTGTGGCTCCAAAGCGTAGAAGACGCAGTTTATGAAGCCGATGACGTGTTGGATGAATTTAATACTAAAAATCAACGGAGAAAAATGGTGCCTGAAAATACTAGCAACTTGCTTTTGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.48

Weight (kDa)

4.48

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000725)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 274
AciI CCGC 2 cut(s) 5, 29
AclWI GGATC 2 cut(s) 44, 85
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 242
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 1 cut(s) 22
AjiI CACGTC 1 cut(s) 232
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
AluBI AGCT 3 cut(s) 62, 112, 140
AluI AGCT 3 cut(s) 62, 112, 140
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 2 cut(s) 44, 85
AoxI GGCC 1 cut(s) 126
ApoI RAATTY 1 cut(s) 242
Asp700I GAANNNNTTC 1 cut(s) 12
BalI TGGCCA 1 cut(s) 128
BanI GGYRCC 1 cut(s) 274
BbsI GAAGAC 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 3 cut(s) 50, 59, 288
BlpI GCTNAGC 1 cut(s) 156
BmgBI CACGTC 1 cut(s) 232
BmiI GGNNCC 3 cut(s) 55, 194, 276
BpiI GAAGAC 1 cut(s) 213
Bpu1102I GCTNAGC 1 cut(s) 156
Bsa29I ATCGAT 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bse3DI GCAATG 1 cut(s) 24
BseCI ATCGAT 1 cut(s) 80
BseGI GGATG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 147
BshFI GGCC 1 cut(s) 128
BshNI GGYRCC 1 cut(s) 274
BshVI ATCGAT 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 113
BsnI GGCC 1 cut(s) 128
Bsp143I GATC 2 cut(s) 36, 77
Bsp1720I GCTNAGC 1 cut(s) 156
BspACI CCGC 2 cut(s) 5, 29
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 148
BspDI ATCGAT 1 cut(s) 80
BspLI GGNNCC 3 cut(s) 55, 194, 276
BspPI GGATC 2 cut(s) 44, 85
BspT107I GGYRCC 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 24
BssMI GATC 2 cut(s) 36, 77
Bst4CI ACNGT 2 cut(s) 124, 189
Bst6I CTCTTC 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 2 cut(s) 39, 80
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 2 cut(s) 36, 77
BstV2I GAAGAC 1 cut(s) 213
BstXI CCANNNNNNTGG 1 cut(s) 74
Bsu15I ATCGAT 1 cut(s) 80
BsuRI GGCC 1 cut(s) 128
BsuTUI ATCGAT 1 cut(s) 80
BtrI CACGTC 1 cut(s) 232
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 168
ClaI ATCGAT 1 cut(s) 80
CseI GACGC 2 cut(s) 161, 218
DdeI CTNAG 1 cut(s) 156
DpnI GATC 2 cut(s) 38, 79
DpnII GATC 2 cut(s) 36, 77
EaeI YGGCCR 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
EciI GGCGGA 1 cut(s) 20
FaiI YATR 1 cut(s) 219
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FauI CCCGC 1 cut(s) 22
FokI GGATG 1 cut(s) 251
FspBI CTAG 3 cut(s) 50, 59, 288
HaeIII GGCC 1 cut(s) 128
HgaI GACGC 2 cut(s) 161, 218
HinfI GANTC 1 cut(s) 132
Hpy188III TCNNGA 2 cut(s) 106, 149
HpyCH4III ACNGT 2 cut(s) 124, 189
HpyCH4IV ACGT 1 cut(s) 231
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 231
Kzo9I GATC 2 cut(s) 36, 77
LmnI GCTCC 2 cut(s) 59, 198
LpnPI CCDG 3 cut(s) 119, 142, 291
MaeI CTAG 3 cut(s) 50, 59, 288
MaeII ACGT 1 cut(s) 231
MalI GATC 2 cut(s) 38, 79
MboI GATC 2 cut(s) 36, 77
MboII GAAGA 3 cut(s) 10, 137, 218
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 1 cut(s) 242
MluNI TGGCCA 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 2 cut(s) 26, 39
Mox20I TGGCCA 1 cut(s) 128
MroXI GAANNNNTTC 1 cut(s) 12
MscI TGGCCA 1 cut(s) 128
MseI TTAA 1 cut(s) 246
Msp20I TGGCCA 1 cut(s) 128
NdeII GATC 2 cut(s) 36, 77
NlaIV GGNNCC 3 cut(s) 55, 194, 276
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 132
PspN4I GGNNCC 3 cut(s) 55, 194, 276
SaqAI TTAA 1 cut(s) 246
Sau3AI GATC 2 cut(s) 36, 77
SetI ASST 4 cut(s) 64, 114, 142, 234
Sse9I AATT 1 cut(s) 242
SsiI CCGC 2 cut(s) 5, 29
SspMI CTAG 3 cut(s) 50, 59, 288
TaaI ACNGT 2 cut(s) 124, 189
TaiI ACGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 80
TasI AATT 1 cut(s) 242
TfiI GAWTC 1 cut(s) 132
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 1 cut(s) 129
TspDTI ATGAA 3 cut(s) 192, 234, 255
TspGWI ACGGA 1 cut(s) 277
TspRI CASTG 1 cut(s) 129
XapI RAATTY 1 cut(s) 242
XmnI GAANNNNTTC 1 cut(s) 12
XspI CTAG 3 cut(s) 50, 59, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.