MD07G1016100.v1.1

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
1439894 .. 1441206
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1016100.v1.1.491

Sequence Viewer

Length: 987 bp
ATGGCAGAAGGAGTTCTCTTTAATATTGTAGAACGGATCATTGTAAGGCTTGGCAACCGTGCTTTCCAAGAGATTGGGTCGATTTGGGGTGTCCAAGATGAGCTCAACAAGCTCAAGGAGACAGTTGTCGGATTCCAAGCTGTTCTTCTAGACGCTGAGCAAAAGCAAGCCAACAACAGTGAAGTCAAACTATGGCTCGAAAGCGTAGAAGATGCAGTTTATGAAGCCGATGATGTGCTGGATGAGTTTAATACTGAAGTTCAGCGGAGACTAGTGATGCATGGCAATACTAAGCTGTCAAAGAAGCTCAAATCAACTTGTTTTGGGTTAAAGATGAGTCATAAGATAAAAGATATCAACAAGAGGCTTAGTGAGATTGAATCCCGTAGACCCAAGGACTTAAACAATAATCGTGAAGATACAAGATTAATATTGAGAGAGAGGGTTACTCACTCATTTGTCCCTAAGGAAAATATTATAGGGAGAGATGAAGATAAAAAGGCACTTATCCAACTTTTGTTGGATCCCATCTCAACTGAGAATGTTTCAACCGTTTCCATAGTTGGAATTGGAGGATTGGGGAAAAGTGCCCTTGCCCAACTCATATTCAATGATGAGGTGATTCAAAAGCATTTTGAGTTGAAAATATGGATATGTGTCTCTAATATATTTGAGTTGGATATATTGGCAAAGAAAATCCTAAAAGCTGACAAGCTTGATAAAAAGGAGCGTGATAAGGTGGACCAGCTTGATATGGATCAGCTGCAAAATGATCTTAGAAAAAAAGTAAATGGGAAGAAATACCTACTTGTGTTGGATGATGTGTGGAATGAGGATCCACATAAGTGGCTTAGCTTGATGGACTTGTTAAGGGGTGGTGGAGAAGGTAGTAGAATATTAATAACCACACGTACTGAAATCGTTGCGATGACATCACACACAACTAAACAGTACGCCTTAAGGGGTTTGAATGAAGAGCAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

329

Amino Acids

37.56

Weight (kDa)

6.37

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 10 - 92 3e-22 Rx N-terminal domain
NB-ARC PF00931 166 - 327 2.7e-27 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000725)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 388
AciI CCGC 1 cut(s) 265
AclWI GGATC 6 cut(s) 44, 518, 531, 765, 830, 843
AcuI CTGAAG 1 cut(s) 276
AfaI GTAC 2 cut(s) 913, 953
AflII CTTAAG 1 cut(s) 958
AflIII ACRYGT 1 cut(s) 908
AgsI TTSAA 6 cut(s) 380, 549, 610, 626, 643, 970
AhlI ACTAGT 1 cut(s) 271
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
AleI CACNNNNGTG 1 cut(s) 844
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 3 cut(s) 113, 262, 664
AlwI GGATC 6 cut(s) 44, 518, 531, 765, 830, 843
ApeKI GCWGC 1 cut(s) 763
AseI ATTAAT 2 cut(s) 428, 899
Asp700I GAANNNNTTC 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 742
AsuHPI GGTGA 1 cut(s) 631
AvaII GGWCC 1 cut(s) 742
AxyI CCTNAGG 1 cut(s) 465
BaeGI GKGCMC 1 cut(s) 592
BamHI GGATCC 2 cut(s) 523, 835
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 750
BccI CCATC 2 cut(s) 536, 853
BcoDI GTCTC 3 cut(s) 113, 262, 664
BcuI ACTAGT 1 cut(s) 271
BfaI CTAG 3 cut(s) 149, 272, 985
BfrI CTTAAG 1 cut(s) 958
BisI GCNGC 1 cut(s) 764
BlpI GCTNAGC 2 cut(s) 156, 851
BlsI GCNGC 1 cut(s) 765
Bme18I GGWCC 1 cut(s) 742
BmgT120I GGNCC 1 cut(s) 742
BmiI GGNNCC 2 cut(s) 525, 837
BmsI GCATC 2 cut(s) 202, 267
BoxI GACNNNNGTC 1 cut(s) 125
BplI GAGNNNNNCTC 2 cut(s) 433, 465
Bpu1102I GCTNAGC 2 cut(s) 156, 851
BpuEI CTTGAG 1 cut(s) 98
BsaAI YACGTR 1 cut(s) 911
BsaBI GATNNNNATC 1 cut(s) 756
BsaJI CCNNGG 1 cut(s) 393
Bse21I CCTNAGG 1 cut(s) 465
Bse8I GATNNNNATC 1 cut(s) 756
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 2 cut(s) 247, 823
BseJI GATNNNNATC 1 cut(s) 756
BseMII CTCAG 2 cut(s) 147, 528
BseSI GKGCMC 1 cut(s) 592
BseXI GCAGC 1 cut(s) 750
BsiHKAI GWGCWC 1 cut(s) 105
BslFI GGGAC 1 cut(s) 446
BsmAI GTCTC 3 cut(s) 113, 262, 664
BsmFI GGGAC 1 cut(s) 446
Bsp1286I GDGCHC 2 cut(s) 105, 592
Bsp143I GATC 5 cut(s) 36, 523, 757, 772, 835
Bsp1720I GCTNAGC 2 cut(s) 156, 851
BspACI CCGC 1 cut(s) 265
BspCNI CTCAG 2 cut(s) 148, 529
BspLI GGNNCC 2 cut(s) 525, 837
BspPI GGATC 6 cut(s) 44, 518, 531, 765, 830, 843
BspQI GCTCTTC 1 cut(s) 969
BspTI CTTAAG 1 cut(s) 958
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 5 cut(s) 36, 523, 757, 772, 835
BssT1I CCWWGG 1 cut(s) 393
Bst4CI ACNGT 5 cut(s) 59, 124, 179, 553, 951
Bst6I CTCTTC 1 cut(s) 969
BstAFI CTTAAG 1 cut(s) 958
BstBAI YACGTR 1 cut(s) 911
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 7 cut(s) 156, 291, 368, 465, 537, 776, 851
BstF5I GGATG 2 cut(s) 247, 823
BstKTI GATC 5 cut(s) 39, 526, 760, 775, 838
BstMAI GTCTC 3 cut(s) 113, 262, 664
BstMBI GATC 5 cut(s) 36, 523, 757, 772, 835
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstPAI GACNNNNGTC 1 cut(s) 125
BstSLI GKGCMC 1 cut(s) 592
BstV1I GCAGC 1 cut(s) 750
BstX2I RGATCY 2 cut(s) 523, 835
BstXI CCANNNNNNTGG 2 cut(s) 74, 846
BstYI RGATCY 2 cut(s) 523, 835
Bsu36I CCTNAGG 1 cut(s) 465
BtgZI GCGATG 1 cut(s) 941
BtsCI GGATG 2 cut(s) 247, 823
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 742
CseI GACGC 1 cut(s) 161
Csp6I GTAC 2 cut(s) 912, 952
CviAII CATG 1 cut(s) 281
CviQI GTAC 2 cut(s) 912, 952
DdeI CTNAG 7 cut(s) 156, 291, 368, 465, 537, 776, 851
DpnI GATC 5 cut(s) 38, 525, 759, 774, 837
DpnII GATC 5 cut(s) 36, 523, 757, 772, 835
Eam1104I CTCTTC 1 cut(s) 969
EarI CTCTTC 1 cut(s) 969
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 393
Eco24I GRGCYC 1 cut(s) 105
Eco32I GATATC 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 742
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 276
Eco81I CCTNAGG 1 cut(s) 465
EcoICRI GAGCTC 1 cut(s) 103
EcoRV GATATC 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 393
EcoT22I ATGCAT 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 1 cut(s) 284
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 1 cut(s) 446
FatI CATG 1 cut(s) 280
FblI GTMKAC 1 cut(s) 388
Fnu4HI GCNGC 1 cut(s) 764
FokI GGATG 2 cut(s) 254, 830
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 764
FspBI CTAG 3 cut(s) 149, 272, 985
GluI GCNGC 1 cut(s) 764
HgaI GACGC 1 cut(s) 161
Hin1II CATG 1 cut(s) 284
HindIII AAGCTT 1 cut(s) 713
HinfI GANTC 4 cut(s) 132, 337, 380, 622
HphI GGTGA 1 cut(s) 631
Hpy166II GTNNAC 2 cut(s) 389, 742
Hpy188I TCNGA 1 cut(s) 131
Hpy188III TCNNGA 2 cut(s) 149, 413
Hpy8I GTNNAC 2 cut(s) 389, 742
HpyAV CCTTC 1 cut(s) 878
HpyCH4III ACNGT 5 cut(s) 59, 124, 179, 553, 951
HpyCH4IV ACGT 1 cut(s) 910
HpyCH4V TGCA 3 cut(s) 215, 280, 766
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 7 cut(s) 156, 291, 368, 465, 537, 776, 851
HpySE526I ACGT 1 cut(s) 910
Hsp92II CATG 1 cut(s) 284
Kzo9I GATC 5 cut(s) 36, 523, 757, 772, 835
LguI GCTCTTC 1 cut(s) 969
LmnI GCTCC 1 cut(s) 727
LpnPI CCDG 2 cut(s) 224, 758
Lsp1109I GCAGC 1 cut(s) 750
LweI GCATC 2 cut(s) 202, 267
MaeI CTAG 3 cut(s) 149, 272, 985
MaeII ACGT 1 cut(s) 910
MaeIII GTNAC 1 cut(s) 445
MalI GATC 5 cut(s) 38, 525, 759, 774, 837
MboI GATC 5 cut(s) 36, 523, 757, 772, 835
MboII GAAGA 6 cut(s) 137, 221, 428, 503, 808, 986
MflI RGATCY 2 cut(s) 523, 835
MhlI GDGCHC 2 cut(s) 105, 592
MluCI AATT 1 cut(s) 567
MlyI GAGTC 1 cut(s) 346
MmeI TCCRAC 6 cut(s) 109, 501, 535, 544, 657, 795
MnlI CCTC 5 cut(s) 357, 435, 566, 610, 826
Mph1103I ATGCAT 1 cut(s) 282
MroXI GAANNNNTTC 1 cut(s) 12
MseI TTAA 8 cut(s) 21, 249, 329, 401, 428, 869, 899, 959
MslI CAYNNNNRTG 1 cut(s) 844
MspA1I CMGCKG 2 cut(s) 265, 763
MspCI CTTAAG 1 cut(s) 958
MwoI GCNNNNNNNGC 1 cut(s) 109
NdeII GATC 5 cut(s) 36, 523, 757, 772, 835
NlaIII CATG 1 cut(s) 284
NlaIV GGNNCC 2 cut(s) 525, 837
NsiI ATGCAT 1 cut(s) 282
OliI CACNNNNGTG 1 cut(s) 844
PciSI GCTCTTC 1 cut(s) 969
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 3 cut(s) 132, 380, 622
PkrI GCNGC 1 cut(s) 765
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
Ppu21I YACGTR 1 cut(s) 911
PshAI GACNNNNGTC 1 cut(s) 125
PshBI ATTAAT 2 cut(s) 428, 899
Psp124BI GAGCTC 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 525, 837
PspPI GGNCC 1 cut(s) 742
PsuI RGATCY 2 cut(s) 523, 835
PvuII CAGCTG 1 cut(s) 763
RsaI GTAC 2 cut(s) 913, 953
RsaNI GTAC 2 cut(s) 912, 952
RseI CAYNNNNRTG 1 cut(s) 844
SacI GAGCTC 1 cut(s) 105
SapI GCTCTTC 1 cut(s) 969
SaqAI TTAA 8 cut(s) 21, 249, 329, 401, 428, 869, 899, 959
SatI GCNGC 1 cut(s) 764
Sau3AI GATC 5 cut(s) 36, 523, 757, 772, 835
Sau96I GGNCC 1 cut(s) 742
SchI GAGTC 1 cut(s) 346
SduI GDGCHC 2 cut(s) 105, 592
SfaNI GCATC 2 cut(s) 202, 267
SinI GGWCC 1 cut(s) 742
SmiMI CAYNNNNRTG 1 cut(s) 844
SmlI CTYRAG 2 cut(s) 113, 958
SmoI CTYRAG 2 cut(s) 113, 958
SpeI ACTAGT 1 cut(s) 271
Sse9I AATT 1 cut(s) 567
SsiI CCGC 1 cut(s) 265
SspI AATATT 4 cut(s) 25, 432, 475, 897
SspMI CTAG 3 cut(s) 149, 272, 985
SstI GAGCTC 1 cut(s) 105
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 5 cut(s) 59, 124, 179, 553, 951
TaiI ACGT 1 cut(s) 913
TaqI TCGA 2 cut(s) 80, 198
TasI AATT 1 cut(s) 567
TfiI GAWTC 3 cut(s) 132, 380, 622
Tru1I TTAA 8 cut(s) 21, 249, 329, 401, 428, 869, 899, 959
Tru9I TTAA 8 cut(s) 21, 249, 329, 401, 428, 869, 899, 959
TscAI CASTG 1 cut(s) 184
TseI GCWGC 1 cut(s) 763
TspDTI ATGAA 3 cut(s) 237, 504, 987
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 1 cut(s) 184
Vha464I CTTAAG 1 cut(s) 958
VpaK11BI GGWCC 1 cut(s) 742
VspI ATTAAT 2 cut(s) 428, 899
XbaI TCTAGA 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 388
XmnI GAANNNNTTC 1 cut(s) 12
XspI CTAG 3 cut(s) 149, 272, 985
Zsp2I ATGCAT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.