pycom07g01280

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000725
Physical Location & Seq
Forward (+)
966735 .. 967493
759 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g01280.1

Sequence Viewer

Length: 759 bp
ATGAGGAATTTGAGGCACGAGAAAGATGTGGTGTCAAAATCAAATGTTGGTACACCTCTCAAGGACAAACAGCATCTCCATTCGTTGGAATTATTCTGGAAATATAGAGAAGATGTAAATGCAGTTGAGGAGGATATTATAAAGTCAATGGAAGTATTGCAACCCTATTCAAATCTAAAGCAGTTGACAATGTGTTTCTATAGTGGTGTGAGATTTGCGAGTTGGTTTTCTTCTCTCATAAATATTGTTAATCTCACAATGTGGGATTGTAAGAGATGCCAACATCTTCCACCCTTGGATCATTTCCCTTCCCTTAAGTTTCTTAGACTTCATGGGTTGGAGAAGTTGGAGTACATATCAGAGAATGAGAGCAGTATTAGTATGAGTGATGAGATGATGAGGATCTCATTCTTCCCCTCCCTGGAGGACCTCTATATAGCAGATTGCCCTGTTCTGAAGGGATGGTGGAGGGCGCACACTCATAACACTGCTTCTTCTTCTTCTTCTTCTTCGTCAACGGAAAATATGCCGTTGCCTTCTTTTCCCCGTCTTTCTATCTTGACCATCCTGGAGTGTCCTAATCTAACTTCACTGCCAGAAGGGACTCGTGGACTCCCCTGTTTAAATAGATTGCAAATATATAGGTTCCCCATGTTAAGCGAAAGGTGCAAGAAAGAAACAGGTGAGGACTGGCCTAAGATTGCTCACATCCCATACATTGCCAACAAAAGGAACAAGAAAAATAATATTTCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

253

Amino Acids

29.22

Weight (kDa)

8.42

Isoelectric Point (pI)

54.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_R13L1-DRL21 PF25019 15 - 112 1.2e-24 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000725)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g16700
malus_domestica MD02G1307600.v1.1 MD03G1278800.v1.1 MD03G1279100.v1.1 MD03G1279600.v1.1 MD03G1280000.v1.1 MD03G1280200.v1.1 MD07G1008400.v1.1 MD07G1014900.v1.1 MD07G1015700.v1.1 MD07G1016100.v1.1 MD07G1016200.v1.1 MD07G1016500.v1.1 MD07G1016600.v1.1 MD07G1016700.v1.1 MD07G1017400.v1.1 MD07G1019600.v1.1 MD07G1019800.v1.1 MD07G1023700.v1.1 MD07G1024100.v1.1 MD07G1024300.v1.1 MD07G1024400.v1.1 MD14G1086900.v1.1 MD14G1087000.v1.1 MD16G1179200.v1.1 MD17G1030800.v1.1
prunus_persica Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011400_v2.0.a1 Prupe.2G011500_v2.0.a1 Prupe.2G013800_v2.0.a1 Prupe.2G013800_v2.0.a1 Prupe.2G013800_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G014000_v2.0.a1 Prupe.2G014100_v2.0.a1
pyrus_communis pycom02g25880 pycom07g00690 pycom07g00720 pycom07g01130 pycom07g01140 pycom07g01150 pycom07g01160 pycom07g01260 pycom07g01280 pycom07g01300 pycom07g01320 pycom07g01550 pycom07g01790 pycom07g01810 pycom07g01840 pycom07g01850 pycom07g01870 pycom07g01880 pycom07g01890 pycom13g15290 pycom16g15040
rosa_chinensis RchiOBHm_Chr4g0420141
rosa_multiflora Rmu_sc0001252.1_g000002
rosa_roxburghii Rroxscaffold_1G00012760
rosa_rugosa Rorug04G0162600
rosa_samantha Rh4AG223400 Rh4BG225900 Rh4CG236600 Rh4DG222200
rosa_wichuraiana Rw4G019230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 140
AccB7I CCANNNNNTGG 1 cut(s) 85
AclWI GGATC 2 cut(s) 306, 410
AcsI RAATTY 1 cut(s) 7
AcuI CTGAAG 1 cut(s) 476
AdeI CACNNNGTG 1 cut(s) 261
AfaI GTAC 2 cut(s) 52, 353
AfiI CCNNNNNNNGG 3 cut(s) 85, 421, 729
AflII CTTAAG 1 cut(s) 314
AgsI TTSAA 1 cut(s) 171
AjnI CCWGG 2 cut(s) 420, 567
AlwI GGATC 2 cut(s) 306, 410
AoxI GGCC 1 cut(s) 692
ApoI RAATTY 1 cut(s) 7
AspLEI GCGC 1 cut(s) 475
AspS9I GGNCC 1 cut(s) 427
AsuHPI GGTGA 1 cut(s) 695
AvaII GGWCC 1 cut(s) 427
BarI GAAGNNNNNNTAC 2 cut(s) 335, 367
BauI CACGAG 2 cut(s) 17, 606
BccI CCATC 2 cut(s) 456, 572
BceAI ACGGC 1 cut(s) 514
BciT130I CCWGG 2 cut(s) 422, 569
BfmI CTRYAG 1 cut(s) 199
BfrI CTTAAG 1 cut(s) 314
Bme1390I CCNGG 2 cut(s) 422, 569
Bme18I GGWCC 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 427
BmiI GGNNCC 1 cut(s) 647
BmrFI CCNGG 2 cut(s) 422, 569
BmsI GCATC 2 cut(s) 82, 266
BpmI CTGGAG 2 cut(s) 443, 590
BpuEI CTTGAG 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 401
BsaJI CCNNGG 2 cut(s) 294, 420
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 421, 729
Bse1I ACTGG 1 cut(s) 695
Bse3DI GCAATG 1 cut(s) 717
Bse8I GATNNNNATC 1 cut(s) 401
BseBI CCWGG 2 cut(s) 422, 569
BseDI CCNNGG 2 cut(s) 294, 420
BseGI GGATG 3 cut(s) 467, 564, 708
BseJI GATNNNNATC 1 cut(s) 401
BseLI CCNNNNNNNGG 3 cut(s) 85, 421, 729
BseMI GCAATG 1 cut(s) 717
BseNI ACTGG 1 cut(s) 695
BseRI GAGGAG 1 cut(s) 143
BshFI GGCC 1 cut(s) 694
BslFI GGGAC 1 cut(s) 616
BslI CCNNNNNNNGG 3 cut(s) 85, 421, 729
BsmFI GGGAC 1 cut(s) 616
BsnI GGCC 1 cut(s) 694
Bsp143I GATC 2 cut(s) 298, 402
BspANI GGCC 1 cut(s) 694
BspLI GGNNCC 1 cut(s) 647
BspPI GGATC 2 cut(s) 306, 410
BspTI CTTAAG 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 717
BsrI ACTGG 1 cut(s) 695
BssECI CCNNGG 2 cut(s) 294, 420
BssMI GATC 2 cut(s) 298, 402
BssSI CACGAG 2 cut(s) 17, 606
BssT1I CCWWGG 1 cut(s) 294
Bst2BI CACGAG 2 cut(s) 17, 606
Bst2UI CCWGG 2 cut(s) 422, 569
BstAFI CTTAAG 1 cut(s) 314
BstDEI CTNAG 3 cut(s) 323, 696, 756
BstF5I GGATG 3 cut(s) 467, 564, 708
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 2 cut(s) 301, 405
BstMBI GATC 2 cut(s) 298, 402
BstMWI GCNNNNNNNGC 1 cut(s) 666
BstNI CCWGG 2 cut(s) 422, 569
BstSCI CCNGG 2 cut(s) 420, 567
BstSFI CTRYAG 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 402
BstYI RGATCY 1 cut(s) 402
BsuRI GGCC 1 cut(s) 694
BtsCI GGATG 3 cut(s) 467, 564, 708
BtsI GCAGTG 2 cut(s) 486, 590
BtsIMutI CAGTG 2 cut(s) 486, 590
CfoI GCGC 1 cut(s) 475
Cfr13I GGNCC 1 cut(s) 427
Csp6I GTAC 2 cut(s) 51, 352
CviAII CATG 2 cut(s) 332, 652
CviJI RGCY 1 cut(s) 694
CviKI_1 RGCY 1 cut(s) 694
CviQI GTAC 2 cut(s) 51, 352
DdeI CTNAG 3 cut(s) 323, 696, 756
DpnI GATC 2 cut(s) 300, 404
DpnII GATC 2 cut(s) 298, 402
DraI TTTAAA 1 cut(s) 624
DraIII CACNNNGTG 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 476
EcoO109I RGGNCCY 1 cut(s) 427
EcoRII CCWGG 2 cut(s) 420, 567
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 2 cut(s) 335, 655
FaqI GGGAC 1 cut(s) 616
FatI CATG 2 cut(s) 331, 651
FokI GGATG 3 cut(s) 474, 551, 695
GlaI GCGC 1 cut(s) 474
GsuI CTGGAG 2 cut(s) 443, 590
HaeIII GGCC 1 cut(s) 694
HhaI GCGC 1 cut(s) 475
Hin1II CATG 2 cut(s) 335, 655
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HincII GTYRAC 2 cut(s) 186, 516
HindII GTYRAC 2 cut(s) 186, 516
HinfI GANTC 2 cut(s) 604, 612
HphI GGTGA 1 cut(s) 695
Hpy166II GTNNAC 4 cut(s) 53, 186, 516, 611
Hpy188I TCNGA 2 cut(s) 361, 456
Hpy188III TCNNGA 2 cut(s) 97, 559
Hpy8I GTNNAC 4 cut(s) 53, 186, 516, 611
HpyAV CCTTC 4 cut(s) 318, 451, 546, 593
HpyCH4V TGCA 4 cut(s) 122, 160, 634, 669
HpyF10VI GCNNNNNNNGC 1 cut(s) 666
HpyF3I CTNAG 3 cut(s) 323, 696, 756
Hsp92II CATG 2 cut(s) 335, 655
HspAI GCGC 1 cut(s) 473
Kzo9I GATC 2 cut(s) 298, 402
LweI GCATC 2 cut(s) 82, 266
MalI GATC 2 cut(s) 300, 404
MboI GATC 2 cut(s) 298, 402
MflI RGATCY 1 cut(s) 402
MluCI AATT 2 cut(s) 7, 89
MlyI GAGTC 2 cut(s) 598, 606
MmeI TCCRAC 3 cut(s) 66, 318, 327
MseI TTAA 4 cut(s) 249, 315, 623, 656
MspCI CTTAAG 1 cut(s) 314
MspR9I CCNGG 2 cut(s) 422, 569
MvaI CCWGG 2 cut(s) 422, 569
MwoI GCNNNNNNNGC 1 cut(s) 666
NdeII GATC 2 cut(s) 298, 402
NlaIII CATG 2 cut(s) 335, 655
NlaIV GGNNCC 1 cut(s) 647
PflMI CCANNNNNTGG 1 cut(s) 85
PfoI TCCNGGA 1 cut(s) 567
PleI GAGTC 2 cut(s) 598, 606
PpsI GAGTC 2 cut(s) 598, 606
PpuMI RGGWCCY 1 cut(s) 427
PsiI TTATAA 1 cut(s) 140
Psp5II RGGWCCY 1 cut(s) 427
Psp6I CCWGG 2 cut(s) 420, 567
PspGI CCWGG 2 cut(s) 420, 567
PspN4I GGNNCC 1 cut(s) 647
PspPI GGNCC 1 cut(s) 427
PspPPI RGGWCCY 1 cut(s) 427
PsuI RGATCY 1 cut(s) 402
RsaI GTAC 2 cut(s) 52, 353
RsaNI GTAC 2 cut(s) 51, 352
SaqAI TTAA 4 cut(s) 249, 315, 623, 656
Sau3AI GATC 2 cut(s) 298, 402
Sau96I GGNCC 1 cut(s) 427
SchI GAGTC 2 cut(s) 598, 606
ScrFI CCNGG 2 cut(s) 422, 569
SetI ASST 5 cut(s) 58, 432, 647, 668, 685
SfaNI GCATC 2 cut(s) 82, 266
SfcI CTRYAG 1 cut(s) 199
SinI GGWCC 1 cut(s) 427
SmlI CTYRAG 2 cut(s) 59, 314
SmoI CTYRAG 2 cut(s) 59, 314
Sse9I AATT 2 cut(s) 7, 89
SspI AATATT 2 cut(s) 244, 748
StyD4I CCNGG 2 cut(s) 420, 567
StyI CCWWGG 1 cut(s) 294
TasI AATT 2 cut(s) 7, 89
TatI WGTACW 1 cut(s) 351
Tru1I TTAA 4 cut(s) 249, 315, 623, 656
Tru9I TTAA 4 cut(s) 249, 315, 623, 656
TscAI CASTG 2 cut(s) 493, 597
TspDTI ATGAA 1 cut(s) 320
TspGWI ACGGA 1 cut(s) 533
TspRI CASTG 2 cut(s) 493, 597
Van91I CCANNNNNTGG 1 cut(s) 85
Vha464I CTTAAG 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 427
XapI RAATTY 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.