MD07G1019800.v1.1

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000725
Physical Location & Seq
Reverse (-)
1675183 .. 1676529
1347 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1019800.v1.1.491

Sequence Viewer

Length: 600 bp
ATGGCGGAAGGAGTTCTCTTCAACGTTGCAGGAGGGATCATTGAGAGGCTAGGCTCCCTTACTTTCAAAGAGATTGGATTGATTTGGGGTGTCAAAGATGAGTTCCAGAAGCTTAAGGAGACAGTTGCAGGATTTCAAGCTGTTCTTCTTGACGCTGAGCAAAAGCAAGCCAACAATGAAGTCAAACTGTGGCTCGAAAGCGTAGAAAATGCAGTCTATGAAGCCGATGACGTACTGGATGAGTTTAATACTGAAGCACAAATGGTGCCTAGAAATACAAAGATGTCAAAAAAGTTGGTTGGATGCGTTTCGGATCTCGATCTGGATTCTGGAATTATGGATACTCGTAAAAGAGGGCGGCTTGAAGGTTTTGGCTTTAACTCTAAAGGCACCTTCAAGAAGAACAAGCAAGCGGGAGAAGAGGGAAAGGATCATAGGGACGAGATTCGATTGGGCGTTGAGGGTGGTGGGAACTTGAAGAAGGAGGCGCCGTCACTCAAAAACAACCAGAACCCGCCGTCCCCACTCCTACGCCAAGCTCAGATTTGCAGAGACTGGAAACTGGAAAAATTGGGAGATTTGCAGAAACTGGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

200

Amino Acids

22.19

Weight (kDa)

5.46

Isoelectric Point (pI)

31.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 13 - 90 3e-21 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000725)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g16700
malus_domestica MD02G1307600.v1.1 MD03G1278800.v1.1 MD03G1279100.v1.1 MD03G1279600.v1.1 MD03G1280000.v1.1 MD03G1280200.v1.1 MD07G1008400.v1.1 MD07G1014900.v1.1 MD07G1015700.v1.1 MD07G1016100.v1.1 MD07G1016200.v1.1 MD07G1016500.v1.1 MD07G1016600.v1.1 MD07G1016700.v1.1 MD07G1017400.v1.1 MD07G1019600.v1.1 MD07G1019800.v1.1 MD07G1023700.v1.1 MD07G1024100.v1.1 MD07G1024300.v1.1 MD07G1024400.v1.1 MD14G1086900.v1.1 MD14G1087000.v1.1 MD16G1179200.v1.1 MD17G1030800.v1.1
prunus_persica Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011400_v2.0.a1 Prupe.2G011500_v2.0.a1 Prupe.2G013800_v2.0.a1 Prupe.2G013800_v2.0.a1 Prupe.2G013800_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G014000_v2.0.a1 Prupe.2G014100_v2.0.a1
pyrus_communis pycom02g25880 pycom07g00690 pycom07g00720 pycom07g01130 pycom07g01140 pycom07g01150 pycom07g01160 pycom07g01260 pycom07g01280 pycom07g01300 pycom07g01320 pycom07g01550 pycom07g01790 pycom07g01810 pycom07g01840 pycom07g01850 pycom07g01870 pycom07g01880 pycom07g01890 pycom13g15290 pycom16g15040
rosa_chinensis RchiOBHm_Chr4g0420141
rosa_multiflora Rmu_sc0001252.1_g000002
rosa_roxburghii Rroxscaffold_1G00012760
rosa_rugosa Rorug04G0162600
rosa_samantha Rh4AG223400 Rh4BG225900 Rh4CG236600 Rh4DG222200
rosa_wichuraiana Rw4G019230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 265, 389, 487
AciI CCGC 4 cut(s) 5, 358, 413, 515
AclI AACGTT 1 cut(s) 24
AclWI GGATC 3 cut(s) 44, 321, 438
AcuI CTGAAG 1 cut(s) 273
AcyI GRCGYC 1 cut(s) 488
AfaI GTAC 1 cut(s) 234
AflII CTTAAG 1 cut(s) 113
AgsI TTSAA 6 cut(s) 22, 67, 137, 365, 397, 478
AloI GAACNNNNNNTCC 2 cut(s) 503, 535
AluBI AGCT 3 cut(s) 112, 140, 539
AluI AGCT 3 cut(s) 112, 140, 539
Alw26I GTCTC 2 cut(s) 113, 546
AlwI GGATC 3 cut(s) 44, 321, 438
AlwNI CAGNNNCTG 2 cut(s) 555, 589
Asp700I GAANNNNTTC 1 cut(s) 12
AspLEI GCGC 1 cut(s) 490
BanI GGYRCC 3 cut(s) 265, 389, 487
BceAI ACGGC 2 cut(s) 475, 502
BciVI GTATCC 1 cut(s) 334
BcoDI GTCTC 2 cut(s) 113, 546
BfaI CTAG 2 cut(s) 50, 270
BfoI RGCGCY 1 cut(s) 491
BfrI CTTAAG 1 cut(s) 113
BfuI GTATCC 1 cut(s) 334
BisI GCNGC 1 cut(s) 359
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 360
BmiI GGNNCC 4 cut(s) 55, 267, 391, 489
BmsI GCATC 1 cut(s) 293
Bpu1102I GCTNAGC 1 cut(s) 156
BsaBI GATNNNNATC 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 488
BsaXI ACNNNNNCTCC 2 cut(s) 476, 506
Bse1I ACTGG 4 cut(s) 240, 560, 567, 594
Bse8I GATNNNNATC 1 cut(s) 318
BseGI GGATG 2 cut(s) 244, 308
BseJI GATNNNNATC 1 cut(s) 318
BseMII CTCAG 2 cut(s) 147, 554
BseNI ACTGG 4 cut(s) 240, 560, 567, 594
BshNI GGYRCC 3 cut(s) 265, 389, 487
BslFI GGGAC 2 cut(s) 452, 505
BsmAI GTCTC 2 cut(s) 113, 546
BsmFI GGGAC 2 cut(s) 452, 505
Bsp143I GATC 4 cut(s) 36, 313, 319, 430
Bsp1720I GCTNAGC 1 cut(s) 156
BspACI CCGC 4 cut(s) 5, 358, 413, 515
BspCNI CTCAG 2 cut(s) 148, 553
BspLI GGNNCC 4 cut(s) 55, 267, 391, 489
BspPI GGATC 3 cut(s) 44, 321, 438
BspT107I GGYRCC 3 cut(s) 265, 389, 487
BspTI CTTAAG 1 cut(s) 113
BsrI ACTGG 4 cut(s) 240, 560, 567, 594
BssMI GATC 4 cut(s) 36, 313, 319, 430
BssNI GRCGYC 1 cut(s) 488
Bst4CI ACNGT 2 cut(s) 124, 189
Bst6I CTCTTC 2 cut(s) 23, 414
BstACI GRCGYC 1 cut(s) 488
BstAFI CTTAAG 1 cut(s) 113
BstC8I GCNNGC 2 cut(s) 168, 411
BstDEI CTNAG 2 cut(s) 156, 540
BstF5I GGATG 2 cut(s) 244, 308
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 4 cut(s) 39, 316, 322, 433
BstMAI GTCTC 2 cut(s) 113, 546
BstMBI GATC 4 cut(s) 36, 313, 319, 430
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuI GTATCC 1 cut(s) 334
BtsCI GGATG 2 cut(s) 244, 308
Cac8I GCNNGC 2 cut(s) 168, 411
CaiI CAGNNNCTG 2 cut(s) 555, 589
CfoI GCGC 1 cut(s) 490
CseI GACGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 233
CviQI GTAC 1 cut(s) 233
DdeI CTNAG 2 cut(s) 156, 540
DinI GGCGCC 1 cut(s) 489
DpnI GATC 4 cut(s) 38, 315, 321, 432
DpnII GATC 4 cut(s) 36, 313, 319, 430
Eam1104I CTCTTC 2 cut(s) 23, 414
EarI CTCTTC 2 cut(s) 23, 414
EciI GGCGGA 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 273
EgeI GGCGCC 1 cut(s) 489
EheI GGCGCC 1 cut(s) 489
FaiI YATR 3 cut(s) 219, 338, 435
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 2 cut(s) 452, 505
FauI CCCGC 2 cut(s) 406, 522
Fnu4HI GCNGC 1 cut(s) 359
FokI GGATG 2 cut(s) 251, 315
Fsp4HI GCNGC 1 cut(s) 359
FspBI CTAG 2 cut(s) 50, 270
GlaI GCGC 1 cut(s) 489
GluI GCNGC 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 491
HgaI GACGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 490
Hin1I GRCGYC 1 cut(s) 488
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 2 cut(s) 326, 445
Hpy188I TCNGA 2 cut(s) 313, 543
Hpy188III TCNNGA 6 cut(s) 106, 149, 317, 323, 330, 397
HpyAV CCTTC 3 cut(s) 359, 403, 475
HpyCH4III ACNGT 2 cut(s) 124, 189
HpyCH4IV ACGT 2 cut(s) 24, 231
HpyCH4V TGCA 5 cut(s) 29, 128, 212, 549, 583
HpyF3I CTNAG 2 cut(s) 156, 540
HpySE526I ACGT 2 cut(s) 24, 231
Hsp92I GRCGYC 1 cut(s) 488
HspAI GCGC 1 cut(s) 488
KasI GGCGCC 1 cut(s) 487
Kzo9I GATC 4 cut(s) 36, 313, 319, 430
LmnI GCTCC 1 cut(s) 59
LweI GCATC 1 cut(s) 293
MaeI CTAG 2 cut(s) 50, 270
MaeII ACGT 2 cut(s) 24, 231
MaeIII GTNAC 1 cut(s) 492
MalI GATC 4 cut(s) 38, 315, 321, 432
MboI GATC 4 cut(s) 36, 313, 319, 430
MboII GAAGA 5 cut(s) 10, 137, 412, 431, 490
MflI RGATCY 1 cut(s) 313
MluCI AATT 3 cut(s) 333, 569, 595
Mly113I GGCGCC 1 cut(s) 488
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 6 cut(s) 26, 39, 347, 415, 454, 478
MroXI GAANNNNTTC 1 cut(s) 12
MseI TTAA 3 cut(s) 114, 246, 378
MspCI CTTAAG 1 cut(s) 113
NarI GGCGCC 1 cut(s) 488
NdeII GATC 4 cut(s) 36, 313, 319, 430
NlaIV GGNNCC 4 cut(s) 55, 267, 391, 489
NmuCI GTSAC 1 cut(s) 492
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 2 cut(s) 326, 445
PkrI GCNGC 1 cut(s) 360
PluTI GGCGCC 1 cut(s) 491
Psp1406I AACGTT 1 cut(s) 24
PspN4I GGNNCC 4 cut(s) 55, 267, 391, 489
PstNI CAGNNNCTG 2 cut(s) 555, 589
PsuI RGATCY 1 cut(s) 313
RsaI GTAC 1 cut(s) 234
RsaNI GTAC 1 cut(s) 233
SaqAI TTAA 3 cut(s) 114, 246, 378
SatI GCNGC 1 cut(s) 359
Sau3AI GATC 4 cut(s) 36, 313, 319, 430
SetI ASST 7 cut(s) 27, 114, 142, 234, 370, 395, 541
SfaNI GCATC 1 cut(s) 293
SfoI GGCGCC 1 cut(s) 489
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 3 cut(s) 333, 569, 595
SsiI CCGC 4 cut(s) 5, 358, 413, 515
SspDI GGCGCC 1 cut(s) 487
SspMI CTAG 2 cut(s) 50, 270
TaaI ACNGT 2 cut(s) 124, 189
TaiI ACGT 2 cut(s) 27, 234
TaqI TCGA 3 cut(s) 195, 318, 448
TasI AATT 3 cut(s) 333, 569, 595
TauI GCSGC 1 cut(s) 361
TfiI GAWTC 2 cut(s) 326, 445
Tru1I TTAA 3 cut(s) 114, 246, 378
Tru9I TTAA 3 cut(s) 114, 246, 378
TseFI GTSAC 1 cut(s) 492
Tsp45I GTSAC 1 cut(s) 492
TspDTI ATGAA 2 cut(s) 192, 234
Vha464I CTTAAG 1 cut(s) 113
XmnI GAANNNNTTC 1 cut(s) 12
XspI CTAG 2 cut(s) 50, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.