pycom07g01150

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
920969 .. 921544
576 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g01150.1

Sequence Viewer

Length: 576 bp
ATGGGTGGTGGAGAAGGTAGCAGAATACTAATAACCACTCGTAGTAAAACTGTTGCGACGATATCAGACACAGCTAAACCATACACCTTAAAGGGTTTGAATGAGGAGCAAAGTTGGTCTTTATTTAAGAAAATGGCTTATAAAGATGGAAAGGAGCCAGAGAATTCAACAATCAAGGCAGTTGGGAAGGAGGTTACTGGAAAATGTCAAGGAGTTCCACTCGCTATAAGGATGATAGGTGGGATGTTGTTCGCCAAAGATGACGAAACACATTGGTTGAATTTCAAAGAAAAGAAACTTTCAAAAATAAATCAAGAAGAAAATGATATTTTGCCAACACTTAAATTGAGTTATGATGTGCTCCCATCACATTTGAAGCATTGTTTTGCTTATTGTAGCTTGTTCCCACCTGATTATGAGATCTCTGTACAGAGATTGATTATACTTTGGGTGGCCCAAGGGTTCATTAAGTCATCCGATGAAAACGAAGGTTTGGAGGATGTTGCGTATGAATATTATAAGGAGTTGTTGCAGAGATCGATCAAGCCGATTATTCCAAGAAGAAAAAACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

192

Amino Acids

21.72

Weight (kDa)

8.81

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 5 - 48 9.1e-06 NB-ARC domain
WHD_DRP PF23559 134 - 181 5e-14 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000725)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 141, 519
AcsI RAATTY 2 cut(s) 163, 280
AfaI GTAC 1 cut(s) 429
AgsI TTSAA 6 cut(s) 100, 168, 280, 286, 303, 376
AluBI AGCT 2 cut(s) 74, 399
AluI AGCT 2 cut(s) 74, 399
Alw21I GWGCWC 1 cut(s) 363
AoxI GGCC 1 cut(s) 453
ApoI RAATTY 2 cut(s) 163, 280
AspS9I GGNCC 1 cut(s) 454
Bbv12I GWGCWC 1 cut(s) 363
BccI CCATC 2 cut(s) 140, 373
BglII AGATCT 1 cut(s) 420
BmgT120I GGNCC 1 cut(s) 454
BmiI GGNNCC 1 cut(s) 156
BplI GAGNNNNNCTC 2 cut(s) 204, 236
Bsa29I ATCGAT 1 cut(s) 539
BsaJI CCNNGG 1 cut(s) 457
Bse1I ACTGG 1 cut(s) 202
BseCI ATCGAT 1 cut(s) 539
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 4 cut(s) 237, 249, 473, 505
BseNI ACTGG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 119
BshFI GGCC 1 cut(s) 455
BshVI ATCGAT 1 cut(s) 539
BsiHKAI GWGCWC 1 cut(s) 363
BsnI GGCC 1 cut(s) 455
Bsp1286I GDGCHC 1 cut(s) 363
Bsp1407I TGTACA 1 cut(s) 427
Bsp143I GATC 3 cut(s) 420, 536, 540
BspANI GGCC 1 cut(s) 455
BspDI ATCGAT 1 cut(s) 539
BspLI GGNNCC 1 cut(s) 156
BsrGI TGTACA 1 cut(s) 427
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 3 cut(s) 420, 536, 540
BssT1I CCWWGG 1 cut(s) 457
Bst4CI ACNGT 1 cut(s) 52
BstAUI TGTACA 1 cut(s) 427
BstF5I GGATG 4 cut(s) 237, 249, 473, 505
BstKTI GATC 3 cut(s) 423, 539, 543
BstMBI GATC 3 cut(s) 420, 536, 540
BstX2I RGATCY 1 cut(s) 420
BstYI RGATCY 1 cut(s) 420
Bsu15I ATCGAT 1 cut(s) 539
BsuRI GGCC 1 cut(s) 455
BsuTUI ATCGAT 1 cut(s) 539
BtsCI GGATG 4 cut(s) 237, 249, 473, 505
Cfr13I GGNCC 1 cut(s) 454
ClaI ATCGAT 1 cut(s) 539
Csp6I GTAC 1 cut(s) 428
CviJI RGCY 6 cut(s) 74, 137, 157, 399, 455, 547
CviKI_1 RGCY 6 cut(s) 74, 137, 157, 399, 455, 547
CviQI GTAC 1 cut(s) 428
DpnI GATC 3 cut(s) 422, 538, 542
DpnII GATC 3 cut(s) 420, 536, 540
Eco130I CCWWGG 1 cut(s) 457
Eco32I GATATC 1 cut(s) 63
EcoRI GAATTC 1 cut(s) 163
EcoRV GATATC 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 457
ErhI CCWWGG 1 cut(s) 457
FaiI YATR 8 cut(s) 82, 141, 227, 354, 417, 443, 510, 519
FalI AAGNNNNNCTT 2 cut(s) 103, 135
FokI GGATG 4 cut(s) 244, 256, 460, 512
HaeIII GGCC 1 cut(s) 455
Hpy188I TCNGA 2 cut(s) 67, 478
Hpy188III TCNNGA 1 cut(s) 314
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 3 cut(s) 8, 181, 482
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 532
Kzo9I GATC 3 cut(s) 420, 536, 540
LmnI GCTCC 3 cut(s) 106, 154, 366
LpnPI CCDG 3 cut(s) 171, 183, 423
MaeIII GTNAC 1 cut(s) 193
MalI GATC 3 cut(s) 422, 538, 542
MboI GATC 3 cut(s) 420, 536, 540
MboII GAAGA 2 cut(s) 329, 573
MflI RGATCY 1 cut(s) 420
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 3 cut(s) 163, 280, 344
MnlI CCTC 3 cut(s) 97, 184, 490
MseI TTAA 4 cut(s) 89, 126, 342, 468
NdeII GATC 3 cut(s) 420, 536, 540
NlaIV GGNNCC 1 cut(s) 156
PcsI WCGNNNNNNNCGW 1 cut(s) 545
PsiI TTATAA 2 cut(s) 141, 519
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 1 cut(s) 454
PsuI RGATCY 1 cut(s) 420
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
SaqAI TTAA 4 cut(s) 89, 126, 342, 468
Sau3AI GATC 3 cut(s) 420, 536, 540
Sau96I GGNCC 1 cut(s) 454
SduI GDGCHC 1 cut(s) 363
SetI ASST 8 cut(s) 19, 76, 89, 195, 241, 401, 412, 493
Sse9I AATT 3 cut(s) 163, 280, 344
SspI AATATT 1 cut(s) 515
StyI CCWWGG 1 cut(s) 457
TaaI ACNGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 539
TasI AATT 3 cut(s) 163, 280, 344
TatI WGTACW 1 cut(s) 427
Tru1I TTAA 4 cut(s) 89, 126, 342, 468
Tru9I TTAA 4 cut(s) 89, 126, 342, 468
TspDTI ATGAA 3 cut(s) 454, 495, 525
XapI RAATTY 2 cut(s) 163, 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.