pycom07g01130

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000725
Physical Location & Seq
Forward (+)
919808 .. 920227
420 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g01130.1

Sequence Viewer

Length: 420 bp
ATGGCGGAAGGAGTTCTCTTCAACATTGCCGAAGGGATCATTGGAAGGCTTGGCTCCCTTGCTTTCCAAGAGATTGGACTGATTTGGGGTGTCCAAGATGAGCTCCGCAAGCTCCGGGATACAGTTGCCGGATTCCAAGCTGTTCTTCTTGACGCTGAGCAAAAGCAAGCCAATAATGAAGTCAAACAGTGGCTCCAAAGCGTAGAAGACGCAGTTTATGAAGCCGATGACCTGCTGGATGAGTTTAATGCTGAAGCTCAGCGGAGACAAATGGTGCCTGGAAATACTACGTTGTTAAAGAAGGTACGCCTCTTCTGCTCTAGCTCAAATCAACTTGCTTTTGGGCTAAAGATTGGTCATAAGATAAAAGGTATTAACGAGAAGCTTGGTGAGGTTGCATCTCATAGAACCTTTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

140

Amino Acids

15.45

Weight (kDa)

5.42

Isoelectric Point (pI)

32.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 13 - 99 1.1e-23 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000725)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g16700
malus_domestica MD02G1307600.v1.1 MD03G1278800.v1.1 MD03G1279100.v1.1 MD03G1279600.v1.1 MD03G1280000.v1.1 MD03G1280200.v1.1 MD07G1008400.v1.1 MD07G1014900.v1.1 MD07G1015700.v1.1 MD07G1016100.v1.1 MD07G1016200.v1.1 MD07G1016500.v1.1 MD07G1016600.v1.1 MD07G1016700.v1.1 MD07G1017400.v1.1 MD07G1019600.v1.1 MD07G1019800.v1.1 MD07G1023700.v1.1 MD07G1024100.v1.1 MD07G1024300.v1.1 MD07G1024400.v1.1 MD14G1086900.v1.1 MD14G1087000.v1.1 MD16G1179200.v1.1 MD17G1030800.v1.1
prunus_persica Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011400_v2.0.a1 Prupe.2G011500_v2.0.a1 Prupe.2G013800_v2.0.a1 Prupe.2G013800_v2.0.a1 Prupe.2G013800_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G014000_v2.0.a1 Prupe.2G014100_v2.0.a1
pyrus_communis pycom02g25880 pycom07g00690 pycom07g00720 pycom07g01130 pycom07g01140 pycom07g01150 pycom07g01160 pycom07g01260 pycom07g01280 pycom07g01300 pycom07g01320 pycom07g01550 pycom07g01790 pycom07g01810 pycom07g01840 pycom07g01850 pycom07g01870 pycom07g01880 pycom07g01890 pycom13g15290 pycom16g15040
rosa_chinensis RchiOBHm_Chr4g0420141
rosa_multiflora Rmu_sc0001252.1_g000002
rosa_roxburghii Rroxscaffold_1G00012760
rosa_rugosa Rorug04G0162600
rosa_samantha Rh4AG223400 Rh4BG225900 Rh4CG236600 Rh4DG222200
rosa_wichuraiana Rw4G019230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 240
AccB1I GGYRCC 1 cut(s) 274
AciI CCGC 3 cut(s) 5, 106, 262
AclWI GGATC 1 cut(s) 44
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 1 cut(s) 306
AgsI TTSAA 1 cut(s) 22
AjnI CCWGG 1 cut(s) 277
AjuI GAANNNNNNNTTGG 4 cut(s) 24, 56, 129, 161
AluBI AGCT 6 cut(s) 103, 112, 140, 257, 324, 385
AluI AGCT 6 cut(s) 103, 112, 140, 257, 324, 385
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 259
AlwI GGATC 1 cut(s) 44
Asp700I GAANNNNTTC 2 cut(s) 12, 412
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 401
BanI GGYRCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 279
BciVI GTATCC 1 cut(s) 112
BcnI CCSGG 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 259
BfaI CTAG 1 cut(s) 321
BfuAI ACCTGC 1 cut(s) 240
BfuI GTATCC 1 cut(s) 112
BlpI GCTNAGC 2 cut(s) 156, 258
Bme1390I CCNGG 2 cut(s) 116, 279
BmiI GGNNCC 3 cut(s) 55, 194, 276
BmrFI CCNGG 2 cut(s) 116, 279
BmsI GCATC 1 cut(s) 407
BpiI GAAGAC 1 cut(s) 213
Bpu1102I GCTNAGC 2 cut(s) 156, 258
BpuMI CCSGG 1 cut(s) 116
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bse3DI GCAATG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 279
BseGI GGATG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 2 cut(s) 147, 272
BshNI GGYRCC 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 2 cut(s) 115, 129
BsmAI GTCTC 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 36
Bsp1720I GCTNAGC 2 cut(s) 156, 258
BspACI CCGC 3 cut(s) 5, 106, 262
BspCNI CTCAG 2 cut(s) 148, 271
BspLI GGNNCC 3 cut(s) 55, 194, 276
BspMI ACCTGC 1 cut(s) 240
BspPI GGATC 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 24
BssMI GATC 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 2 cut(s) 124, 189
Bst6I CTCTTC 2 cut(s) 23, 317
BstC8I GCNNGC 2 cut(s) 110, 168
BstDEI CTNAG 2 cut(s) 156, 258
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 2 cut(s) 109, 315
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 2 cut(s) 114, 277
BstV2I GAAGAC 1 cut(s) 213
BstXI CCANNNNNNTGG 1 cut(s) 74
BsuI GTATCC 1 cut(s) 112
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 194
BveI ACCTGC 1 cut(s) 240
Cac8I GCNNGC 2 cut(s) 110, 168
CseI GACGC 2 cut(s) 161, 218
Csp6I GTAC 1 cut(s) 305
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 2 cut(s) 156, 258
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eam1104I CTCTTC 2 cut(s) 23, 317
EarI CTCTTC 2 cut(s) 23, 317
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 273
EcoICRI GAGCTC 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 277
EcoT38I GRGCYC 1 cut(s) 105
FaiI YATR 4 cut(s) 219, 360, 405, 418
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FokI GGATG 1 cut(s) 251
FriOI GRGCYC 1 cut(s) 105
FspBI CTAG 1 cut(s) 321
HapII CCGG 2 cut(s) 115, 129
HgaI GACGC 2 cut(s) 161, 218
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 1 cut(s) 132
HpaII CCGG 2 cut(s) 115, 129
HphI GGTGA 1 cut(s) 401
Hpy188III TCNNGA 1 cut(s) 149
HpyAV CCTTC 3 cut(s) 26, 39, 295
HpyCH4III ACNGT 2 cut(s) 124, 189
HpyCH4IV ACGT 1 cut(s) 290
HpyCH4V TGCA 1 cut(s) 398
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 315
HpyF3I CTNAG 2 cut(s) 156, 258
HpySE526I ACGT 1 cut(s) 290
Kzo9I GATC 1 cut(s) 36
LmnI GCTCC 4 cut(s) 59, 108, 117, 198
LpnPI CCDG 6 cut(s) 128, 142, 221, 245, 264, 291
LweI GCATC 1 cut(s) 407
MaeI CTAG 1 cut(s) 321
MaeII ACGT 1 cut(s) 290
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 4 cut(s) 10, 137, 218, 304
MhlI GDGCHC 1 cut(s) 105
MnlI CCTC 2 cut(s) 320, 385
MroXI GAANNNNTTC 2 cut(s) 12, 412
MseI TTAA 3 cut(s) 246, 296, 375
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 2 cut(s) 115, 129
MspR9I CCNGG 2 cut(s) 116, 279
MvaI CCWGG 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 109, 315
NciI CCSGG 1 cut(s) 116
NdeII GATC 1 cut(s) 36
NlaIV GGNNCC 3 cut(s) 55, 194, 276
PdmI GAANNNNTTC 2 cut(s) 12, 412
PfeI GAWTC 1 cut(s) 132
PfoI TCCNGGA 1 cut(s) 114
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 3 cut(s) 55, 194, 276
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 3 cut(s) 246, 296, 375
Sau3AI GATC 1 cut(s) 36
ScrFI CCNGG 2 cut(s) 116, 279
SduI GDGCHC 1 cut(s) 105
SfaNI GCATC 1 cut(s) 407
SsiI CCGC 3 cut(s) 5, 106, 262
SspMI CTAG 1 cut(s) 321
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 2 cut(s) 114, 277
TaaI ACNGT 2 cut(s) 124, 189
TaiI ACGT 1 cut(s) 293
TfiI GAWTC 1 cut(s) 132
Tru1I TTAA 3 cut(s) 246, 296, 375
Tru9I TTAA 3 cut(s) 246, 296, 375
TscAI CASTG 1 cut(s) 194
TspDTI ATGAA 3 cut(s) 192, 234, 405
TspRI CASTG 1 cut(s) 194
XmnI GAANNNNTTC 2 cut(s) 12, 412
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.