pycom07g01140

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
920463 .. 920888
426 bp
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UTR
Exon/CDS
Intron
pycom07g01140.1

Sequence Viewer

Length: 426 bp
ATGGGTCATAAGATAAAAGATATTAACAAGAGGCTGAGTGAGGTTGCAAATCGTAGAACCTTTCACTTAGAAGTAAATCGTGAAGATACACCATTTGTAAAGAGAGAGAGGGTCACTCACTCATTTGTCCGTAAGGAAAATATTATAGGGAGAGATGAAGATAAAATGGCAATTATCGAACTTTTGATCGATCCCATCTCATCTGAGAATGTGTCAACCATTTCCATAGTTGGACTTGGAGGATTAGGGAAAACTGCACTTGCGCAACTCATATTCAACGAGGAGGTGATTCAAAGTCATTTTGAGTTGAAAATATGGACATGTGTCTCTAATGTATTTGAGTTGGATATAGTTGTTAAGAAAATCCTTCAATCCGAGCATAATGGGATAGAGCAGTTGCAAAATGATCGATTAGAAAAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

142

Amino Acids

16.23

Weight (kDa)

6.53

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 60 - 128 3.8e-12 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000725)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 264
AclWI GGATC 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 320
AgsI TTSAA 4 cut(s) 277, 293, 310, 371
Alw26I GTCTC 1 cut(s) 331
AlwI GGATC 1 cut(s) 185
AspLEI GCGC 1 cut(s) 265
AsuHPI GGTGA 1 cut(s) 298
BccI CCATC 1 cut(s) 203
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BcoDI GTCTC 1 cut(s) 331
BoxI GACNNNNGTC 1 cut(s) 323
BplI GAGNNNNNCTC 2 cut(s) 100, 132
Bsa29I ATCGAT 2 cut(s) 189, 409
BseCI ATCGAT 2 cut(s) 189, 409
BseMII CTCAG 2 cut(s) 26, 195
BseRI GAGGAG 1 cut(s) 296
BsgI GTGCAG 1 cut(s) 240
BshVI ATCGAT 2 cut(s) 189, 409
BsmAI GTCTC 1 cut(s) 331
Bsp143I GATC 3 cut(s) 186, 190, 406
BspCNI CTCAG 2 cut(s) 27, 196
BspDI ATCGAT 2 cut(s) 189, 409
BspPI GGATC 1 cut(s) 185
BssMI GATC 3 cut(s) 186, 190, 406
BstDEI CTNAG 3 cut(s) 35, 67, 204
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 3 cut(s) 189, 193, 409
BstMAI GTCTC 1 cut(s) 331
BstMBI GATC 3 cut(s) 186, 190, 406
BstNSI RCATGY 1 cut(s) 324
BstPAI GACNNNNGTC 1 cut(s) 323
Bsu15I ATCGAT 2 cut(s) 189, 409
BsuTUI ATCGAT 2 cut(s) 189, 409
CfoI GCGC 1 cut(s) 265
ClaI ATCGAT 2 cut(s) 189, 409
CviAII CATG 1 cut(s) 321
CviJI RGCY 1 cut(s) 34
CviKI_1 RGCY 1 cut(s) 34
DdeI CTNAG 3 cut(s) 35, 67, 204
DpnI GATC 3 cut(s) 188, 192, 408
DpnII GATC 3 cut(s) 186, 190, 406
FaeI CATG 1 cut(s) 324
FaiI YATR 8 cut(s) 9, 146, 227, 272, 316, 322, 350, 381
FatI CATG 1 cut(s) 320
FspI TGCGCA 1 cut(s) 264
GlaI GCGC 1 cut(s) 264
HhaI GCGC 1 cut(s) 265
Hin1II CATG 1 cut(s) 324
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HinfI GANTC 1 cut(s) 289
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 2 cut(s) 205, 376
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 1 cut(s) 216
HpyAV CCTTC 1 cut(s) 377
HpyCH4V TGCA 3 cut(s) 47, 257, 400
HpyF3I CTNAG 3 cut(s) 35, 67, 204
Hsp92II CATG 1 cut(s) 324
HspAI GCGC 1 cut(s) 263
Kzo9I GATC 3 cut(s) 186, 190, 406
MaeIII GTNAC 1 cut(s) 112
MalI GATC 3 cut(s) 188, 192, 408
MboI GATC 3 cut(s) 186, 190, 406
MboII GAAGA 2 cut(s) 95, 170
MluCI AATT 1 cut(s) 171
MmeI TCCRAC 2 cut(s) 211, 324
MnlI CCTC 6 cut(s) 24, 34, 102, 233, 274, 277
MseI TTAA 2 cut(s) 24, 357
NdeII GATC 3 cut(s) 186, 190, 406
NlaIII CATG 1 cut(s) 324
NmuCI GTSAC 1 cut(s) 112
NsbI TGCGCA 1 cut(s) 264
NspI RCATGY 1 cut(s) 324
PciI ACATGT 1 cut(s) 320
PfeI GAWTC 1 cut(s) 289
PscI ACATGT 1 cut(s) 320
PshAI GACNNNNGTC 1 cut(s) 323
SaqAI TTAA 2 cut(s) 24, 357
Sau3AI GATC 3 cut(s) 186, 190, 406
SetI ASST 3 cut(s) 45, 62, 288
SgeI CNNG 7 cut(s) 40, 92, 248, 272, 292, 333, 388
Sse9I AATT 1 cut(s) 171
SspI AATATT 1 cut(s) 142
TaqI TCGA 3 cut(s) 177, 189, 409
TasI AATT 1 cut(s) 171
TfiI GAWTC 1 cut(s) 289
Tru1I TTAA 2 cut(s) 24, 357
Tru9I TTAA 2 cut(s) 24, 357
TseFI GTSAC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 171
TspGWI ACGGA 1 cut(s) 119
XceI RCATGY 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.