pycom07g01790

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000725
Physical Location & Seq
Reverse (-)
1424853 .. 1425865
1013 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g01790.2

Sequence Viewer

Length: 897 bp
ATGATTTCGGTATGCATTCATTACCCACTAGATATTGTTATTTCGAGGCACGAGAAAGATGTGGTGTCAGAATCAAATGTTGGTACACCTCTCAAGGACAAACAGCATCTCCATTCGTTGCAATTGTTGTGGATACCTCGAGAAGCTGTAAAGGCAGTTGATGAGGAGGATATTATAAAGTCAATGGAAGTATTGCAACCCCATTCAAATCTAAAGCAGTTGAAAGTGTGGTTTTATGGTGGTGTGAGGTTTGCGAGTTGGTTTTCTTCTCTCATAAATATTGTTAATCTCGAATTGTCGTTTTGTAAGAGATGCCAACGTCTTCCGACCTTGGATCATTTGCCTTCCCTTAAGTCGCTTTATCTTAGAGGGTTGGAGAAGTTGGAGTACATATCAGAGAATGAGAGCAGTAATAGTATGAGTGATGAGATGATGAGGATCTCATTCTTTCCCTCCCTGGAGTACCTCCACATCGAAGATTGCCCAGTTCTGAAGGGATGGTGGAGGGCGCACACTCATAACAGTGCTTCTTCTTCTTCATCAACTGAAATTCTGTCGTTACCTTCTTTTCCCTCTCTTTCTACATTGGGGATCAGGAATTGTCCTAATCTAACTTCCATGCCTCTGTATCCAAATGTGGAGAAAATAGATCTTGAGAAGAGCAGCTGGAAGGATTTGACATCACTGCCAGAAGAAATAAGCAATCTCACGTCACTCCAGCGACTTGAAATTAGACATTGCTCTAATTTGGCATCACTGCCAGAAGGGATTCGTGGACTCCCCAGTTTAAATAGCTTGCAAATTTTGGGTTGCCCCATGTTAAGAGAAAAATGCAGGAAAAAAACAGGTGAGGACTGGCCTAAGATTGCTCACATCCCACACATCACCATTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

299

Amino Acids

34.04

Weight (kDa)

6.64

Isoelectric Point (pI)

55.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000725)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g16700
malus_domestica MD02G1307600.v1.1 MD03G1278800.v1.1 MD03G1279100.v1.1 MD03G1279600.v1.1 MD03G1280000.v1.1 MD03G1280200.v1.1 MD07G1008400.v1.1 MD07G1014900.v1.1 MD07G1015700.v1.1 MD07G1016100.v1.1 MD07G1016200.v1.1 MD07G1016500.v1.1 MD07G1016600.v1.1 MD07G1016700.v1.1 MD07G1017400.v1.1 MD07G1019600.v1.1 MD07G1019800.v1.1 MD07G1023700.v1.1 MD07G1024100.v1.1 MD07G1024300.v1.1 MD07G1024400.v1.1 MD14G1086900.v1.1 MD14G1087000.v1.1 MD16G1179200.v1.1 MD17G1030800.v1.1
prunus_persica Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011400_v2.0.a1 Prupe.2G011500_v2.0.a1 Prupe.2G013800_v2.0.a1 Prupe.2G013800_v2.0.a1 Prupe.2G013800_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G014000_v2.0.a1 Prupe.2G014100_v2.0.a1
pyrus_communis pycom02g25880 pycom07g00690 pycom07g00720 pycom07g01130 pycom07g01140 pycom07g01150 pycom07g01160 pycom07g01260 pycom07g01280 pycom07g01300 pycom07g01320 pycom07g01550 pycom07g01790 pycom07g01810 pycom07g01840 pycom07g01850 pycom07g01870 pycom07g01880 pycom07g01890 pycom13g15290 pycom16g15040
rosa_chinensis RchiOBHm_Chr4g0420141
rosa_multiflora Rmu_sc0001252.1_g000002
rosa_roxburghii Rroxscaffold_1G00012760
rosa_rugosa Rorug04G0162600
rosa_samantha Rh4AG223400 Rh4BG225900 Rh4CG236600 Rh4DG222200
rosa_wichuraiana Rw4G019230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
AclWI GGATC 3 cut(s) 342, 446, 599
AcsI RAATTY 2 cut(s) 549, 801
AcuI CTGAAG 1 cut(s) 512
AfaI GTAC 3 cut(s) 85, 389, 464
AflII CTTAAG 1 cut(s) 350
AgsI TTSAA 3 cut(s) 207, 223, 728
AjiI CACGTC 1 cut(s) 711
AjnI CCWGG 1 cut(s) 456
AjuI GAANNNNNNNTTGG 2 cut(s) 63, 95
AluBI AGCT 3 cut(s) 146, 666, 795
AluI AGCT 3 cut(s) 146, 666, 795
AlwI GGATC 3 cut(s) 342, 446, 599
Ama87I CYCGRG 1 cut(s) 138
AoxI GGCC 1 cut(s) 857
ApeKI GCWGC 1 cut(s) 663
ApoI RAATTY 2 cut(s) 549, 801
Asp700I GAANNNNTTC 1 cut(s) 768
AspLEI GCGC 1 cut(s) 511
AsuHPI GGTGA 2 cut(s) 860, 877
AvaI CYCGRG 1 cut(s) 138
BarI GAAGNNNNNNTAC 2 cut(s) 371, 403
BauI CACGAG 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 675
BccI CCATC 1 cut(s) 492
BciT130I CCWGG 1 cut(s) 458
BciVI GTATCC 2 cut(s) 126, 639
BfaI CTAG 1 cut(s) 29
BfrI CTTAAG 1 cut(s) 350
BfuI GTATCC 2 cut(s) 126, 639
BglII AGATCT 1 cut(s) 649
BisI GCNGC 1 cut(s) 664
BlsI GCNGC 1 cut(s) 665
Bme1390I CCNGG 1 cut(s) 458
BmeT110I CYCGRG 1 cut(s) 138
BmgBI CACGTC 1 cut(s) 711
BmrFI CCNGG 1 cut(s) 458
BmrI ACTGGG 2 cut(s) 479, 777
BmsI GCATC 3 cut(s) 115, 302, 761
BmuI ACTGGG 2 cut(s) 479, 777
BpiI GAAGAC 1 cut(s) 314
BpmI CTGGAG 2 cut(s) 479, 701
BpuEI CTTGAG 2 cut(s) 77, 674
BsaBI GATNNNNATC 1 cut(s) 437
BsaJI CCNNGG 2 cut(s) 330, 456
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bse1I ACTGG 3 cut(s) 485, 783, 860
Bse3DI GCAATG 1 cut(s) 736
Bse8I GATNNNNATC 1 cut(s) 437
BseBI CCWGG 1 cut(s) 458
BseDI CCNNGG 2 cut(s) 330, 456
BseGI GGATG 2 cut(s) 503, 873
BseJI GATNNNNATC 1 cut(s) 437
BseMI GCAATG 1 cut(s) 736
BseNI ACTGG 3 cut(s) 485, 783, 860
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 675
BshFI GGCC 1 cut(s) 859
BsiHKCI CYCGRG 1 cut(s) 138
BsmI GAATGC 1 cut(s) 15
BsnI GGCC 1 cut(s) 859
BsoBI CYCGRG 1 cut(s) 138
Bsp143I GATC 4 cut(s) 334, 438, 591, 649
BspANI GGCC 1 cut(s) 859
BspPI GGATC 3 cut(s) 342, 446, 599
BspQI GCTCTTC 1 cut(s) 653
BspTI CTTAAG 1 cut(s) 350
BsrDI GCAATG 1 cut(s) 736
BsrI ACTGG 3 cut(s) 485, 783, 860
BssECI CCNNGG 2 cut(s) 330, 456
BssMI GATC 4 cut(s) 334, 438, 591, 649
BssSI CACGAG 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 330
Bst2BI CACGAG 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 458
Bst4CI ACNGT 1 cut(s) 524
Bst6I CTCTTC 1 cut(s) 653
BstAFI CTTAAG 1 cut(s) 350
BstC8I GCNNGC 1 cut(s) 797
BstDEI CTNAG 2 cut(s) 365, 861
BstF5I GGATG 2 cut(s) 503, 873
BstHHI GCGC 1 cut(s) 511
BstKTI GATC 4 cut(s) 337, 441, 594, 652
BstMBI GATC 4 cut(s) 334, 438, 591, 649
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 1 cut(s) 458
BstSCI CCNGG 1 cut(s) 456
BstV1I GCAGC 1 cut(s) 675
BstV2I GAAGAC 1 cut(s) 314
BstX2I RGATCY 2 cut(s) 438, 649
BstYI RGATCY 2 cut(s) 438, 649
BsuI GTATCC 2 cut(s) 126, 639
BsuRI GGCC 1 cut(s) 859
BtrI CACGTC 1 cut(s) 711
BtsCI GGATG 2 cut(s) 503, 873
BtsI GCAGTG 2 cut(s) 683, 755
BtsIMutI CAGTG 3 cut(s) 529, 683, 755
Cac8I GCNNGC 1 cut(s) 797
CfoI GCGC 1 cut(s) 511
Csp6I GTAC 3 cut(s) 84, 388, 463
CspCI CAANNNNNGTGG 2 cut(s) 110, 145
CviAII CATG 2 cut(s) 619, 817
CviJI RGCY 4 cut(s) 146, 666, 795, 859
CviKI_1 RGCY 4 cut(s) 146, 666, 795, 859
CviQI GTAC 3 cut(s) 84, 388, 463
DdeI CTNAG 2 cut(s) 365, 861
DpnI GATC 4 cut(s) 336, 440, 593, 651
DpnII GATC 4 cut(s) 334, 438, 591, 649
DraI TTTAAA 1 cut(s) 789
Eam1104I CTCTTC 1 cut(s) 653
EarI CTCTTC 1 cut(s) 653
Eco130I CCWWGG 1 cut(s) 330
Eco57I CTGAAG 1 cut(s) 512
Eco88I CYCGRG 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 456
EcoT14I CCWWGG 1 cut(s) 330
EcoT22I ATGCAT 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 2 cut(s) 622, 820
FaiI YATR 9 cut(s) 13, 176, 237, 275, 392, 419, 519, 620, 818
FatI CATG 2 cut(s) 618, 816
Fnu4HI GCNGC 1 cut(s) 664
FokI GGATG 2 cut(s) 510, 860
Fsp4HI GCNGC 1 cut(s) 664
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 510
GluI GCNGC 1 cut(s) 664
GsuI CTGGAG 2 cut(s) 479, 701
HaeIII GGCC 1 cut(s) 859
HhaI GCGC 1 cut(s) 511
Hin1II CATG 2 cut(s) 622, 820
Hin6I GCGC 1 cut(s) 509
HinP1I GCGC 1 cut(s) 509
HinfI GANTC 3 cut(s) 71, 769, 777
HphI GGTGA 2 cut(s) 860, 877
Hpy166II GTNNAC 2 cut(s) 86, 776
Hpy188I TCNGA 4 cut(s) 70, 327, 397, 492
Hpy188III TCNNGA 4 cut(s) 140, 290, 595, 653
Hpy8I GTNNAC 2 cut(s) 86, 776
HpyAV CCTTC 5 cut(s) 354, 487, 573, 664, 758
HpyCH4III ACNGT 1 cut(s) 524
HpyCH4IV ACGT 2 cut(s) 319, 710
HpyCH4V TGCA 5 cut(s) 15, 121, 196, 799, 834
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 2 cut(s) 365, 861
HpySE526I ACGT 2 cut(s) 319, 710
Hsp92II CATG 2 cut(s) 622, 820
HspAI GCGC 1 cut(s) 509
Kzo9I GATC 4 cut(s) 334, 438, 591, 649
LguI GCTCTTC 1 cut(s) 653
Lsp1109I GCAGC 1 cut(s) 675
LweI GCATC 3 cut(s) 115, 302, 761
MaeI CTAG 1 cut(s) 29
MaeII ACGT 2 cut(s) 319, 710
MaeIII GTNAC 2 cut(s) 558, 711
MalI GATC 4 cut(s) 336, 440, 593, 651
MboI GATC 4 cut(s) 334, 438, 591, 649
MboII GAAGA 8 cut(s) 258, 314, 488, 522, 525, 528, 670, 704
MfeI CAATTG 1 cut(s) 122
MflI RGATCY 2 cut(s) 438, 649
MluCI AATT 7 cut(s) 122, 293, 549, 598, 729, 745, 801
MlyI GAGTC 1 cut(s) 771
MmeI TCCRAC 3 cut(s) 350, 354, 363
Mph1103I ATGCAT 1 cut(s) 17
MroXI GAANNNNTTC 1 cut(s) 768
MseI TTAA 5 cut(s) 285, 351, 788, 821, 895
MslI CAYNNNNRTG 1 cut(s) 522
MspA1I CMGCKG 1 cut(s) 666
MspCI CTTAAG 1 cut(s) 350
MspR9I CCNGG 1 cut(s) 458
MunI CAATTG 1 cut(s) 122
Mva1269I GAATGC 1 cut(s) 15
MvaI CCWGG 1 cut(s) 458
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 4 cut(s) 334, 438, 591, 649
NlaIII CATG 2 cut(s) 622, 820
NmuCI GTSAC 1 cut(s) 711
NsiI ATGCAT 1 cut(s) 17
PaeR7I CTCGAG 1 cut(s) 138
PciSI GCTCTTC 1 cut(s) 653
PctI GAATGC 1 cut(s) 15
PdmI GAANNNNTTC 1 cut(s) 768
PfeI GAWTC 2 cut(s) 71, 769
PkrI GCNGC 1 cut(s) 665
PleI GAGTC 1 cut(s) 771
PpsI GAGTC 1 cut(s) 771
PsiI TTATAA 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 456
PspGI CCWGG 1 cut(s) 456
PsuI RGATCY 2 cut(s) 438, 649
PvuII CAGCTG 1 cut(s) 666
RsaI GTAC 3 cut(s) 85, 389, 464
RsaNI GTAC 3 cut(s) 84, 388, 463
RseI CAYNNNNRTG 1 cut(s) 522
SapI GCTCTTC 1 cut(s) 653
SaqAI TTAA 5 cut(s) 285, 351, 788, 821, 895
SatI GCNGC 1 cut(s) 664
Sau3AI GATC 4 cut(s) 334, 438, 591, 649
SchI GAGTC 1 cut(s) 771
ScrFI CCNGG 1 cut(s) 458
SfaNI GCATC 3 cut(s) 115, 302, 761
Sfr274I CTCGAG 1 cut(s) 138
SlaI CTCGAG 1 cut(s) 138
SmiMI CAYNNNNRTG 1 cut(s) 522
SmlI CTYRAG 4 cut(s) 92, 138, 350, 653
SmoI CTYRAG 4 cut(s) 92, 138, 350, 653
Sse9I AATT 7 cut(s) 122, 293, 549, 598, 729, 745, 801
SspI AATATT 1 cut(s) 280
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 456
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 1 cut(s) 524
TaiI ACGT 2 cut(s) 322, 713
TaqI TCGA 4 cut(s) 44, 139, 291, 474
TasI AATT 7 cut(s) 122, 293, 549, 598, 729, 745, 801
TatI WGTACW 1 cut(s) 387
TfiI GAWTC 2 cut(s) 71, 769
Tru1I TTAA 5 cut(s) 285, 351, 788, 821, 895
Tru9I TTAA 5 cut(s) 285, 351, 788, 821, 895
TscAI CASTG 3 cut(s) 529, 690, 762
TseFI GTSAC 1 cut(s) 711
TseI GCWGC 1 cut(s) 663
Tsp45I GTSAC 1 cut(s) 711
TspDTI ATGAA 2 cut(s) 8, 528
TspRI CASTG 3 cut(s) 529, 690, 762
Vha464I CTTAAG 1 cut(s) 350
XapI RAATTY 2 cut(s) 549, 801
XhoI CTCGAG 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 768
XspI CTAG 1 cut(s) 29
Zsp2I ATGCAT 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.