MD07G1023700.v1.1

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
1953346 .. 1955148
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1023700.v1.1.491

Sequence Viewer

Length: 1689 bp
ATGGATCAGCTGCAAAATAATCTTAGAGAAAAAGTAGATGGGAAGAAGTACCTACTTGTGCTGGATGACGTGTGGAATGAGGATCAAGAGAAGTGGCTTAGCTTGAAGGACTTGTTAGTGGGTGGTGGAGAAGGTAGTAGAATACTAATTACCACTCGTAGCGAAATTGTTGCAAAGGCATCACACACAACTAAATTATACACCTTGGGGGGTTTGAATGAAGAGCAAAGTTGGACTTTATTTAAGGAAATGGCTTTTGAAGATGGAAATGAGCCACATAATCCAACAATTAAGGCAGTTGGGGAGGAGGTTGCGAGAAAATGTCAAGGAGTTCCACTCGCTATAAGGACGATAGGTGGGATGCTGCGCACCAAACATCATGAAATAGAATGGTTGAATTTCAAAAAAAAGAAACTTTCAAAAATAAGTCAAGAAGAAACTGAAATTTTACCAACACTCAAACTAAGTTATGATGTGCTCCCATCACATTTGAAGCATTGTTTTGCTTATTGTAGCTTGTTCCCACCCGATTATGAGATCTCTGTACAGAGATTGATTAGACTTTGGGTGGCGCAAGGGTTTATTAAGTCATCCGATGAAAACGAGGGTTTGGAGGATGTTGCGTTTGAATATTACAGGGAATTGTTGTGCAGATCGTTTTTTCAAGAAGAAAAAATAGATAAGTTTGGTAGAGTAGAAAGTTGTAAAATGCACGATCTTATGAATGAACTTGCAATCTTAGTGTCGGGGGTCGGAAGCGCCGTAATTGATCTGAACCGAAAGAATTTTCATGAAAAGCTTCGTCATGTATCTTTCAATTTTGAAATTGATTTGTCGAAATGGGAAGTGCCAACATCCTTGCTAAAAGCAAGCAAGATACGAACCTTTCTTTTTCTTTGGCAACCAGTGGAGCGTGATCCCCAAAGTTCCTCACGTAATGCATTTTATACTACAATTGTTTCAAATTTTAAGTCATTACGAATGTTGAGTCTCAATAGATTAGGAATTAAAAGATTGCCTAATTATCTTAGAAAAATGAAACATTTGAGATATCTTGATCTTAGTAGGAATCACATGGAGAGACTTCCAGATTGGATAGTTGGACTTTCGAATTTGGAAACACTAGATCTCAGTTGGTGTCAGTATCTTGTGGAATTGCCTAAAGACATTAAAAAAATGATCAACTTAAGGCATCTCATCTTGGAAGGCTGTAATTCGTTGAGTGGAATGCCACGTGGAATTGGTGAATTGAATGGTGTTCGTACATTGAATAGATTTGTTTTGAGCGAAAGCAATTGTTTGGGGAGGGGCGGTAGTGCTGGTCTTGCTGAGCTGGGGGCCCTTAACGAATTAAGGGGAGAGTTGGAGATAAGGAATTTGAGGCATGTGGTGTCAGAATCAAATGTTGGTACACCTCTCAAGGACAAACAGCATCTCCATTCGTTGGAATTGTGGTGGAAAGAGGAAGAAGATGTAAAGGCCGTTGATGAGGAGGATATTATAAAGTCAATGGAAGTATTGCAACCCCATTCTAATCTAAAGCAGTTGTCCGTGTATAACTATAGGGGTGTGAGGTTTGCGAGTTGGTTTTCTTCTCTCATTAATATTGTTAATCTCAAATTGAGTAATTGTAAGAGATGCCAACATCTTCCACCCTTGGATCATTTGCCTTCCCTTAAAGAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

563

Amino Acids

64.82

Weight (kDa)

7.95

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 4 - 88 5.1e-14 NB-ARC domain
WHD_DRP PF23559 173 - 245 2.2e-25 Disease resistance protein Winged helix domain
LRR_14 PF23598 319 - 559 3.3e-22 Leucine-rich repeat region
LRR_8 PF13855 325 - 381 5.7e-09 Leucine rich repeat
LRR_R13L1-DRL21 PF25019 442 - 561 2.3e-33 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000725)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1502
Acc16I TGCGCA 1 cut(s) 368
AccB7I CCANNNNNTGG 1 cut(s) 1444
AciI CCGC 1 cut(s) 1311
AclWI GGATC 4 cut(s) 12, 90, 911, 1668
AcsI RAATTY 6 cut(s) 397, 444, 784, 964, 1111, 1375
AcvI CACGTG 1 cut(s) 1235
AfaI GTAC 4 cut(s) 50, 546, 1264, 1411
AfiI CCNNNNNNNGG 1 cut(s) 1444
AflII CTTAAG 1 cut(s) 1186
AflIII ACRYGT 1 cut(s) 69
AjiI CACGTC 1 cut(s) 70
AjuI GAANNNNNNNTTGG 2 cut(s) 1389, 1421
AluBI AGCT 5 cut(s) 10, 102, 516, 799, 1333
AluI AGCT 5 cut(s) 10, 102, 516, 799, 1333
Alw21I GWGCWC 1 cut(s) 480
Alw26I GTCTC 2 cut(s) 995, 1075
AlwI GGATC 4 cut(s) 12, 90, 911, 1668
AoxI GGCC 2 cut(s) 1338, 1479
ApaI GGGCCC 1 cut(s) 1342
ApeKI GCWGC 2 cut(s) 10, 364
ApoI RAATTY 6 cut(s) 397, 444, 784, 964, 1111, 1375
ArsI GACNNNNNNTTYG 4 cut(s) 956, 973, 988, 1005
AseI ATTAAT 1 cut(s) 1602
Asp700I GAANNNNTTC 1 cut(s) 798
AspLEI GCGC 3 cut(s) 369, 574, 761
AspS9I GGNCC 2 cut(s) 1338, 1339
AsuHPI GGTGA 1 cut(s) 1256
AsuII TTCGAA 1 cut(s) 1109
BaeGI GKGCMC 1 cut(s) 1342
BanII GRGCYC 1 cut(s) 1342
BbrPI CACGTG 1 cut(s) 1235
Bbv12I GWGCWC 1 cut(s) 480
BbvI GCAGC 1 cut(s) 351
BccI CCATC 3 cut(s) 32, 257, 490
BceAI ACGGC 2 cut(s) 746, 1466
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BclI TGATCA 1 cut(s) 1179
BcoDI GTCTC 2 cut(s) 995, 1075
BfaI CTAG 1 cut(s) 1124
BfmI CTRYAG 1 cut(s) 1561
BfoI RGCGCY 1 cut(s) 762
BfrI CTTAAG 1 cut(s) 1186
BglII AGATCT 2 cut(s) 537, 1126
BisI GCNGC 2 cut(s) 11, 365
BlpI GCTNAGC 2 cut(s) 98, 1329
BlsI GCNGC 2 cut(s) 12, 366
BmgBI CACGTC 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 1338, 1339
BmiI GGNNCC 2 cut(s) 1339, 1340
BmsI GCATC 5 cut(s) 188, 351, 1201, 1441, 1628
BplI GAGNNNNNCTC 2 cut(s) 321, 353
Bpu1102I GCTNAGC 2 cut(s) 98, 1329
Bpu14I TTCGAA 1 cut(s) 1109
BpuEI CTTGAG 1 cut(s) 1403
BsaAI YACGTR 2 cut(s) 935, 1235
BsaJI CCNNGG 2 cut(s) 204, 1656
BsaXI ACNNNNNCTCC 4 cut(s) 1297, 1327, 1419, 1449
Bsc4I CCNNNNNNNGG 1 cut(s) 1444
Bse1I ACTGG 1 cut(s) 905
BseDI CCNNGG 2 cut(s) 204, 1656
BseGI GGATG 5 cut(s) 70, 366, 590, 622, 854
BseLI CCNNNNNNNGG 1 cut(s) 1444
BseMII CTCAG 2 cut(s) 1144, 1320
BseNI ACTGG 1 cut(s) 905
BseRI GAGGAG 2 cut(s) 320, 1505
BseSI GKGCMC 1 cut(s) 1342
BseXI GCAGC 1 cut(s) 351
BseYI CCCAGC 1 cut(s) 1333
BsgI GTGCAG 1 cut(s) 670
BshFI GGCC 2 cut(s) 1340, 1481
BsiHKAI GWGCWC 1 cut(s) 480
BslI CCNNNNNNNGG 1 cut(s) 1444
BsmAI GTCTC 2 cut(s) 995, 1075
BsmI GAATGC 1 cut(s) 1233
BsnI GGCC 2 cut(s) 1340, 1481
Bsp119I TTCGAA 1 cut(s) 1109
Bsp120I GGGCCC 1 cut(s) 1338
Bsp1286I GDGCHC 2 cut(s) 480, 1342
Bsp1407I TGTACA 1 cut(s) 544
Bsp1720I GCTNAGC 2 cut(s) 98, 1329
BspACI CCGC 1 cut(s) 1311
BspANI GGCC 2 cut(s) 1340, 1481
BspCNI CTCAG 2 cut(s) 1143, 1321
BspHI TCATGA 2 cut(s) 379, 790
BspLI GGNNCC 2 cut(s) 1339, 1340
BspPI GGATC 4 cut(s) 12, 90, 911, 1668
BspQI GCTCTTC 1 cut(s) 216
BspT104I TTCGAA 1 cut(s) 1109
BspTI CTTAAG 1 cut(s) 1186
BsrGI TGTACA 1 cut(s) 544
BsrI ACTGG 1 cut(s) 905
BssECI CCNNGG 2 cut(s) 204, 1656
BssT1I CCWWGG 2 cut(s) 204, 1656
Bst6I CTCTTC 1 cut(s) 216
BstAFI CTTAAG 1 cut(s) 1186
BstAUI TGTACA 1 cut(s) 544
BstBAI YACGTR 2 cut(s) 935, 1235
BstBI TTCGAA 1 cut(s) 1109
BstC8I GCNNGC 1 cut(s) 871
BstDEI CTNAG 8 cut(s) 23, 98, 464, 739, 1028, 1061, 1130, 1329
BstF5I GGATG 5 cut(s) 70, 366, 590, 622, 854
BstH2I RGCGCY 1 cut(s) 762
BstHHI GCGC 3 cut(s) 369, 574, 761
BstMAI GTCTC 2 cut(s) 995, 1075
BstMWI GCNNNNNNNGC 1 cut(s) 1325
BstNSI RCATGY 1 cut(s) 1388
BstSFI CTRYAG 1 cut(s) 1561
BstSLI GKGCMC 1 cut(s) 1342
BstV1I GCAGC 1 cut(s) 351
BstX2I RGATCY 2 cut(s) 537, 1126
BstYI RGATCY 2 cut(s) 537, 1126
BsuRI GGCC 2 cut(s) 1340, 1481
BtrI CACGTC 1 cut(s) 70
BtsCI GGATG 5 cut(s) 70, 366, 590, 622, 854
BtsIMutI CAGTG 1 cut(s) 912
Cac8I GCNNGC 1 cut(s) 871
CciI TCATGA 2 cut(s) 379, 790
CfoI GCGC 3 cut(s) 369, 574, 761
Cfr13I GGNCC 2 cut(s) 1338, 1339
Csp6I GTAC 4 cut(s) 49, 545, 1263, 1410
CspCI CAANNNNNGTGG 2 cut(s) 74, 109
CviAII CATG 5 cut(s) 380, 791, 806, 1075, 1385
CviQI GTAC 4 cut(s) 49, 545, 1263, 1410
DdeI CTNAG 8 cut(s) 23, 98, 464, 739, 1028, 1061, 1130, 1329
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco130I CCWWGG 2 cut(s) 204, 1656
Eco24I GRGCYC 1 cut(s) 1342
Eco32I GATATC 1 cut(s) 1052
Eco72I CACGTG 1 cut(s) 1235
EcoO109I RGGNCCY 2 cut(s) 1338, 1339
EcoRV GATATC 1 cut(s) 1052
EcoT14I CCWWGG 2 cut(s) 204, 1656
EcoT22I ATGCAT 1 cut(s) 943
EcoT38I GRGCYC 1 cut(s) 1342
ErhI CCWWGG 2 cut(s) 204, 1656
FaeI CATG 5 cut(s) 383, 794, 809, 1078, 1388
FalI AAGNNNNNCTT 2 cut(s) 220, 252
FatI CATG 5 cut(s) 379, 790, 805, 1074, 1384
FbaI TGATCA 1 cut(s) 1179
Fnu4HI GCNGC 2 cut(s) 11, 365
FokI GGATG 5 cut(s) 77, 373, 577, 629, 841
FriOI GRGCYC 1 cut(s) 1342
Fsp4HI GCNGC 2 cut(s) 11, 365
FspBI CTAG 1 cut(s) 1124
FspI TGCGCA 1 cut(s) 368
GlaI GCGC 3 cut(s) 368, 573, 760
GluI GCNGC 2 cut(s) 11, 365
GsaI CCCAGC 1 cut(s) 1337
HaeII RGCGCY 1 cut(s) 762
HaeIII GGCC 2 cut(s) 1340, 1481
HhaI GCGC 3 cut(s) 369, 574, 761
Hin1II CATG 5 cut(s) 383, 794, 809, 1078, 1388
Hin6I GCGC 3 cut(s) 367, 572, 759
HinP1I GCGC 3 cut(s) 367, 572, 759
HindIII AAGCTT 1 cut(s) 797
HinfI GANTC 3 cut(s) 988, 1069, 1397
HphI GGTGA 1 cut(s) 1256
Hpy166II GTNNAC 1 cut(s) 1412
Hpy188I TCNGA 4 cut(s) 595, 755, 774, 1396
Hpy188III TCNNGA 7 cut(s) 86, 380, 431, 665, 791, 1055, 1088
Hpy8I GTNNAC 1 cut(s) 1412
HpyAV CCTTC 4 cut(s) 100, 125, 1199, 1680
HpyCH4IV ACGT 3 cut(s) 69, 934, 1234
HpyCH4V TGCA 7 cut(s) 13, 173, 651, 712, 734, 941, 1522
HpyF10VI GCNNNNNNNGC 1 cut(s) 1325
HpyF3I CTNAG 8 cut(s) 23, 98, 464, 739, 1028, 1061, 1130, 1329
HpySE526I ACGT 3 cut(s) 69, 934, 1234
Hsp92II CATG 5 cut(s) 383, 794, 809, 1078, 1388
HspAI GCGC 3 cut(s) 367, 572, 759
Ksp22I TGATCA 1 cut(s) 1179
LguI GCTCTTC 1 cut(s) 216
LmnI GCTCC 2 cut(s) 483, 910
LpnPI CCDG 6 cut(s) 47, 622, 918, 1101, 1305, 1319
Lsp1109I GCAGC 1 cut(s) 351
LweI GCATC 5 cut(s) 188, 351, 1201, 1441, 1628
MaeI CTAG 1 cut(s) 1124
MaeII ACGT 3 cut(s) 69, 934, 1234
MboII GAAGA 9 cut(s) 55, 233, 272, 446, 680, 1478, 1481, 1584, 1640
MfeI CAATTG 2 cut(s) 954, 1294
MflI RGATCY 2 cut(s) 537, 1126
MhlI GDGCHC 2 cut(s) 480, 1342
MlyI GAGTC 1 cut(s) 997
MmeI TCCRAC 6 cut(s) 212, 308, 733, 1081, 1344, 1425
Mph1103I ATGCAT 1 cut(s) 943
MroXI GAANNNNTTC 1 cut(s) 798
MspA1I CMGCKG 1 cut(s) 10
MspCI CTTAAG 1 cut(s) 1186
MunI CAATTG 2 cut(s) 954, 1294
Mva1269I GAATGC 1 cut(s) 1233
MwoI GCNNNNNNNGC 1 cut(s) 1325
NlaIII CATG 5 cut(s) 383, 794, 809, 1078, 1388
NlaIV GGNNCC 2 cut(s) 1339, 1340
NsbI TGCGCA 1 cut(s) 368
NsiI ATGCAT 1 cut(s) 943
NspI RCATGY 1 cut(s) 1388
NspV TTCGAA 1 cut(s) 1109
PagI TCATGA 2 cut(s) 379, 790
PciSI GCTCTTC 1 cut(s) 216
PcsI WCGNNNNNNNCGW 1 cut(s) 759
PctI GAATGC 1 cut(s) 1233
PdmI GAANNNNTTC 1 cut(s) 798
PfeI GAWTC 2 cut(s) 1069, 1397
PflMI CCANNNNNTGG 1 cut(s) 1444
PkrI GCNGC 2 cut(s) 12, 366
PleI GAGTC 1 cut(s) 996
PmaCI CACGTG 1 cut(s) 1235
PmlI CACGTG 1 cut(s) 1235
PpsI GAGTC 1 cut(s) 996
Ppu21I YACGTR 2 cut(s) 935, 1235
PshBI ATTAAT 1 cut(s) 1602
PsiI TTATAA 1 cut(s) 1502
PspCI CACGTG 1 cut(s) 1235
PspFI CCCAGC 1 cut(s) 1333
PspN4I GGNNCC 2 cut(s) 1339, 1340
PspOMI GGGCCC 1 cut(s) 1338
PspPI GGNCC 2 cut(s) 1338, 1339
PsuI RGATCY 2 cut(s) 537, 1126
PvuII CAGCTG 1 cut(s) 10
RsaI GTAC 4 cut(s) 50, 546, 1264, 1411
RsaNI GTAC 4 cut(s) 49, 545, 1263, 1410
SapI GCTCTTC 1 cut(s) 216
SatI GCNGC 2 cut(s) 11, 365
Sau96I GGNCC 2 cut(s) 1338, 1339
SchI GAGTC 1 cut(s) 997
SduI GDGCHC 2 cut(s) 480, 1342
SfaNI GCATC 5 cut(s) 188, 351, 1201, 1441, 1628
SfcI CTRYAG 1 cut(s) 1561
SfuI TTCGAA 1 cut(s) 1109
SmlI CTYRAG 2 cut(s) 1186, 1418
SmoI CTYRAG 2 cut(s) 1186, 1418
SsiI CCGC 1 cut(s) 1311
SspI AATATT 2 cut(s) 632, 1606
SspMI CTAG 1 cut(s) 1124
StyI CCWWGG 2 cut(s) 204, 1656
TaiI ACGT 3 cut(s) 72, 937, 1237
TaqI TCGA 2 cut(s) 836, 1109
TatI WGTACW 1 cut(s) 544
TfiI GAWTC 2 cut(s) 1069, 1397
TscAI CASTG 1 cut(s) 912
TseI GCWGC 2 cut(s) 10, 364
TspDTI ATGAA 8 cut(s) 234, 396, 612, 737, 741, 779, 807, 1052
TspGWI ACGGA 1 cut(s) 1540
TspRI CASTG 1 cut(s) 912
Van91I CCANNNNNTGG 1 cut(s) 1444
Vha464I CTTAAG 1 cut(s) 1186
VspI ATTAAT 1 cut(s) 1602
XapI RAATTY 6 cut(s) 397, 444, 784, 964, 1111, 1375
XceI RCATGY 1 cut(s) 1388
XmnI GAANNNNTTC 1 cut(s) 798
XspI CTAG 1 cut(s) 1124
Zsp2I ATGCAT 1 cut(s) 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.