MD07G1016600.v1.1

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000725
Physical Location & Seq
Forward (+)
1462277 .. 1462970
694 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1016600.v1.1.491

Sequence Viewer

Length: 630 bp
ATGAGTCATAAGATAAAAGATATCAACAAGAGGCTTAGTGAGATTGAATCCCGTAGACCCAAGGACTTAAACAATAATCGTGAAGATACAAGATTAATATTGAGAGAGAGGGTTACTCACTCATTTGTCCCTAAGGAAAATATTATAGGGAGAGATGAAGATAAAAAGGCACTTATCCAACTTTTGTTGGATCCCATCTCAACTGAGAATGTTTCAACCGTTTCCATAGTTGGAATTGGAGGATTGGGGAAAAGTGCCCTTGCCCAACTCATATTCAATGATGAGGTGATTCAAAAGCATTTTGAGTTGAAAATATGGATATGTGTCTCTAATATATTTGAGTTGGATATATTGGCAAAGAAAATCCTAAAAGCTGACAAGCTTGATAAAAAGGAGCGTGATAAGGTGGACCAGCTTGATATGGATCAGCTGCAAAATGATCTTAGAAAAAAAGTAAATGGGAAGAAATACCTACTTGTGTTGGATGATGTGTGGAATGAGGATCCACATAAGTGGCTTAGCTTGATGGACTTGTTAAGGGGTGGTGGAGAAGGTAGTAGAATATTAATAACCACACGTACTGAAATCGTTGCGATGACATCACACACACAACTAAACAGTACGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

210

Amino Acids

24.0

Weight (kDa)

8.54

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 55 - 200 6.2e-27 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000725)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g16700
malus_domestica MD02G1307600.v1.1 MD03G1278800.v1.1 MD03G1279100.v1.1 MD03G1279600.v1.1 MD03G1280000.v1.1 MD03G1280200.v1.1 MD07G1008400.v1.1 MD07G1014900.v1.1 MD07G1015700.v1.1 MD07G1016100.v1.1 MD07G1016200.v1.1 MD07G1016500.v1.1 MD07G1016600.v1.1 MD07G1016700.v1.1 MD07G1017400.v1.1 MD07G1019600.v1.1 MD07G1019800.v1.1 MD07G1023700.v1.1 MD07G1024100.v1.1 MD07G1024300.v1.1 MD07G1024400.v1.1 MD14G1086900.v1.1 MD14G1087000.v1.1 MD16G1179200.v1.1 MD17G1030800.v1.1
prunus_persica Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011400_v2.0.a1 Prupe.2G011500_v2.0.a1 Prupe.2G013800_v2.0.a1 Prupe.2G013800_v2.0.a1 Prupe.2G013800_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G014000_v2.0.a1 Prupe.2G014100_v2.0.a1
pyrus_communis pycom02g25880 pycom07g00690 pycom07g00720 pycom07g01130 pycom07g01140 pycom07g01150 pycom07g01160 pycom07g01260 pycom07g01280 pycom07g01300 pycom07g01320 pycom07g01550 pycom07g01790 pycom07g01810 pycom07g01840 pycom07g01850 pycom07g01870 pycom07g01880 pycom07g01890 pycom13g15290 pycom16g15040
rosa_chinensis RchiOBHm_Chr4g0420141
rosa_multiflora Rmu_sc0001252.1_g000002
rosa_roxburghii Rroxscaffold_1G00012760
rosa_rugosa Rorug04G0162600
rosa_samantha Rh4AG223400 Rh4BG225900 Rh4CG236600 Rh4DG222200
rosa_wichuraiana Rw4G019230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 55
AclWI GGATC 5 cut(s) 185, 198, 432, 497, 510
AfaI GTAC 2 cut(s) 580, 622
AflIII ACRYGT 1 cut(s) 575
AgsI TTSAA 5 cut(s) 47, 216, 277, 293, 310
AleI CACNNNNGTG 1 cut(s) 511
AluBI AGCT 5 cut(s) 374, 382, 415, 430, 522
AluI AGCT 5 cut(s) 374, 382, 415, 430, 522
Alw26I GTCTC 1 cut(s) 331
AlwI GGATC 5 cut(s) 185, 198, 432, 497, 510
ApeKI GCWGC 1 cut(s) 430
AseI ATTAAT 2 cut(s) 95, 566
AspS9I GGNCC 1 cut(s) 409
AsuHPI GGTGA 1 cut(s) 298
AvaII GGWCC 1 cut(s) 409
AxyI CCTNAGG 1 cut(s) 132
BaeGI GKGCMC 1 cut(s) 259
BamHI GGATCC 2 cut(s) 190, 502
BbvI GCAGC 1 cut(s) 417
BccI CCATC 2 cut(s) 203, 520
BcoDI GTCTC 1 cut(s) 331
BisI GCNGC 1 cut(s) 431
BlpI GCTNAGC 1 cut(s) 518
BlsI GCNGC 1 cut(s) 432
Bme18I GGWCC 1 cut(s) 409
BmgT120I GGNCC 1 cut(s) 409
BmiI GGNNCC 2 cut(s) 192, 504
BplI GAGNNNNNCTC 2 cut(s) 100, 132
Bpu1102I GCTNAGC 1 cut(s) 518
BsaAI YACGTR 1 cut(s) 578
BsaBI GATNNNNATC 1 cut(s) 423
BsaJI CCNNGG 1 cut(s) 60
Bse21I CCTNAGG 1 cut(s) 132
Bse8I GATNNNNATC 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 490
BseJI GATNNNNATC 1 cut(s) 423
BseMII CTCAG 1 cut(s) 195
BseSI GKGCMC 1 cut(s) 259
BseXI GCAGC 1 cut(s) 417
BslFI GGGAC 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 331
BsmFI GGGAC 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 4 cut(s) 190, 424, 439, 502
Bsp1720I GCTNAGC 1 cut(s) 518
BspCNI CTCAG 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 192, 504
BspPI GGATC 5 cut(s) 185, 198, 432, 497, 510
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 4 cut(s) 190, 424, 439, 502
BssT1I CCWWGG 1 cut(s) 60
Bst4CI ACNGT 2 cut(s) 220, 620
BstBAI YACGTR 1 cut(s) 578
BstDEI CTNAG 5 cut(s) 35, 132, 204, 443, 518
BstF5I GGATG 1 cut(s) 490
BstKTI GATC 4 cut(s) 193, 427, 442, 505
BstMAI GTCTC 1 cut(s) 331
BstMBI GATC 4 cut(s) 190, 424, 439, 502
BstSLI GKGCMC 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 417
BstX2I RGATCY 2 cut(s) 190, 502
BstXI CCANNNNNNTGG 1 cut(s) 513
BstYI RGATCY 2 cut(s) 190, 502
Bsu36I CCTNAGG 1 cut(s) 132
BtgZI GCGATG 1 cut(s) 608
BtsCI GGATG 1 cut(s) 490
Cfr13I GGNCC 1 cut(s) 409
Csp6I GTAC 2 cut(s) 579, 621
CviJI RGCY 7 cut(s) 34, 374, 382, 415, 430, 517, 522
CviKI_1 RGCY 7 cut(s) 34, 374, 382, 415, 430, 517, 522
CviQI GTAC 2 cut(s) 579, 621
DdeI CTNAG 5 cut(s) 35, 132, 204, 443, 518
DpnI GATC 4 cut(s) 192, 426, 441, 504
DpnII GATC 4 cut(s) 190, 424, 439, 502
Eco130I CCWWGG 1 cut(s) 60
Eco32I GATATC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 409
Eco81I CCTNAGG 1 cut(s) 132
EcoRV GATATC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaqI GGGAC 1 cut(s) 113
FblI GTMKAC 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 431
FokI GGATG 1 cut(s) 497
Fsp4HI GCNGC 1 cut(s) 431
GluI GCNGC 1 cut(s) 431
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 3 cut(s) 4, 47, 289
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 2 cut(s) 56, 409
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 2 cut(s) 56, 409
HpyAV CCTTC 1 cut(s) 545
HpyCH4III ACNGT 2 cut(s) 220, 620
HpyCH4IV ACGT 1 cut(s) 577
HpyCH4V TGCA 1 cut(s) 433
HpyF3I CTNAG 5 cut(s) 35, 132, 204, 443, 518
HpySE526I ACGT 1 cut(s) 577
Kzo9I GATC 4 cut(s) 190, 424, 439, 502
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 1 cut(s) 425
Lsp1109I GCAGC 1 cut(s) 417
MaeII ACGT 1 cut(s) 577
MaeIII GTNAC 1 cut(s) 112
MalI GATC 4 cut(s) 192, 426, 441, 504
MboI GATC 4 cut(s) 190, 424, 439, 502
MboII GAAGA 3 cut(s) 95, 170, 475
MflI RGATCY 2 cut(s) 190, 502
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 1 cut(s) 234
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 5 cut(s) 168, 202, 211, 324, 462
MnlI CCTC 5 cut(s) 24, 102, 233, 277, 493
MseI TTAA 5 cut(s) 68, 95, 536, 566, 628
MslI CAYNNNNRTG 1 cut(s) 511
MspA1I CMGCKG 1 cut(s) 430
NdeII GATC 4 cut(s) 190, 424, 439, 502
NlaIV GGNNCC 2 cut(s) 192, 504
OliI CACNNNNGTG 1 cut(s) 511
PfeI GAWTC 2 cut(s) 47, 289
PkrI GCNGC 1 cut(s) 432
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Ppu21I YACGTR 1 cut(s) 578
PshBI ATTAAT 2 cut(s) 95, 566
PspN4I GGNNCC 2 cut(s) 192, 504
PspPI GGNCC 1 cut(s) 409
PsuI RGATCY 2 cut(s) 190, 502
PvuII CAGCTG 1 cut(s) 430
RsaI GTAC 2 cut(s) 580, 622
RsaNI GTAC 2 cut(s) 579, 621
RseI CAYNNNNRTG 1 cut(s) 511
SaqAI TTAA 5 cut(s) 68, 95, 536, 566, 628
SatI GCNGC 1 cut(s) 431
Sau3AI GATC 4 cut(s) 190, 424, 439, 502
Sau96I GGNCC 1 cut(s) 409
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 1 cut(s) 259
SinI GGWCC 1 cut(s) 409
SmiMI CAYNNNNRTG 1 cut(s) 511
Sse9I AATT 1 cut(s) 234
SspI AATATT 3 cut(s) 99, 142, 564
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 2 cut(s) 220, 620
TaiI ACGT 1 cut(s) 580
TasI AATT 1 cut(s) 234
TfiI GAWTC 2 cut(s) 47, 289
Tru1I TTAA 5 cut(s) 68, 95, 536, 566, 628
Tru9I TTAA 5 cut(s) 68, 95, 536, 566, 628
TseI GCWGC 1 cut(s) 430
TspDTI ATGAA 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 409
VspI ATTAAT 2 cut(s) 95, 566
XmiI GTMKAC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.