pycom07g01320

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
998904 .. 1000658
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g01320.2

Sequence Viewer

Length: 1605 bp
ATGGACTTGTTAAAGGGTGGTGGAGTAGGTAGTAGAATATTAATAACCACTCGTACTAAAACCGTTGCGATGACATCACACACAACTAAACAGTACCCCTTAAGGGGTTTGAATGAAGTGCAAAGCTGGTCCTTATTTAAGAAAATGACTTTTCAAGATGGAAAAGAACCAGAGAATTCAACAATTAAGGCAGTTGGGATGGAGGTTGTAAGAAAATGTCAGGGAGTTCCACTCGCTATAAGGACGATAGGTGGGATGTTGCACAACAAACATCATGAAATAGAATGGTTTAATTTCAAAGAAAGGAAACTTTCAAAAATAAGTCAAAAAGAAGATGATATTTTACCAACACTCAAACTAAGTTATGATGTGCTCCCAACACATTTGAAGCATTGTTTTGCTTATTGTAGCTTGTTCCCACCTGATTATGATATCTCTGTACCAAGATTGATTAGACTTTGGGTGGCACAAGGGTTCATCAAGTCATCCGGCGAAAACGACTGTTTGGAGGATGTTGCATTTGAATATTACAGGGAATTGTTGTGCAGATCCACTGTAGTTGAGCCAAACCAAAAGAATTTTCATGGAAAGCTTTGTCATGTATCTTTCAATTTTGATATTGATTTGTCGAAATGGGAAGTGCCAACATCCTTGCTAAAAGCAAGCAAGATACGAACCTTTCTTTTTCTTCAACAAGAAGCTTGGGGTGATCACCAAAGTTCCTCACGTAATGCATTTTATACTACAATTGTTTCAAATTTTAAGTCATTACGGATAAAAATGAAACATTTGAGATATCTTGATCTTAGTTGTAATCGTTACATGAAGAGACTTCCAGATTGGATAGTTGGACTTTCGAATTTGGAAACACTAGATCTCTCTTATTGTTATGAGCTTGTGGAATTGCCTAGAGACATTAAAAAAATGATCAACTTAAGGCATCTCATATTGGAAAAGTGCTGGGGATTGAGTGGAATGCCACGTGGAATTGGTGAATTGAATGGTGTTCGTACATTGCATAGATTTGTTTTGAGCGAAAGCAATTGTTTGGGGAGGGGCGGTAGTGCTGGTCTTGCTGAGCTGGGGAACCTTAACGAATTAAGGGGACACTTACTTATTTATTGTTTGAGGCATGTGGTGTCAGAATCAAATGTTGGTACACCTCTCAAGGACAAACAGCATCTTTGTTCGTTGGATTTAATCTGGAAATATGGCGAAGATGTAAACGGAGTTGATGAGGAGGATATTATAAAGTCAATGGAAGTATTGCAACCCCATTCTAATCTGAAGCAGTTGACCGTGCGGCATTATGTTGGTGTGAGGTTTGCGAGTTGGTTTTCTTCTCTCATAAATATTGTTAATCTCGAATTGATTGGATGTAAGAGATGCCAACGTCTTCCGCCCTTGGATCATTTGCCTTCCCTTAAGTCTCTTGAGCTACGGAATTTGGAGAAGTTGGAGTACATATCAGAGAATGAGAGCAGTAATAGTATGAGTGATGAGATGATGAGGATCGATCATTCAACCACAGTTTCCCTCCCTGGAGATACTCACTTTATACAAATGCCCTGTTCTGAAGGGATGGTGGAGGGCCCACACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

535

Amino Acids

61.1

Weight (kDa)

8.25

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000725)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1250
AciI CCGC 3 cut(s) 1059, 1303, 1400
AclWI GGATC 3 cut(s) 543, 1416, 1520
AcsI RAATTY 5 cut(s) 175, 577, 757, 859, 1444
AcuI CTGAAG 2 cut(s) 1307, 1596
AcvI CACGTG 1 cut(s) 983
AfaI GTAC 6 cut(s) 55, 95, 441, 1012, 1159, 1463
AfiI CCNNNNNNNGG 2 cut(s) 103, 104
AflII CTTAAG 3 cut(s) 100, 934, 1424
AjnI CCWGG 1 cut(s) 1540
AjuI GAANNNNNNNTTGG 4 cut(s) 564, 596, 1137, 1169
AluBI AGCT 7 cut(s) 126, 411, 592, 701, 895, 1081, 1438
AluI AGCT 7 cut(s) 126, 411, 592, 701, 895, 1081, 1438
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 3 cut(s) 823, 906, 1434
AlwI GGATC 3 cut(s) 543, 1416, 1520
AoxI GGCC 1 cut(s) 1591
ApaI GGGCCC 1 cut(s) 1595
ApoI RAATTY 5 cut(s) 175, 577, 757, 859, 1444
ArsI GACNNNNNNTTYG 2 cut(s) 749, 781
AseI ATTAAT 1 cut(s) 41
AspS9I GGNCC 3 cut(s) 129, 1591, 1592
AsuHPI GGTGA 3 cut(s) 704, 719, 1004
AsuII TTCGAA 1 cut(s) 857
AvaII GGWCC 1 cut(s) 129
BaeGI GKGCMC 1 cut(s) 1595
BanII GRGCYC 1 cut(s) 1595
BarI GAAGNNNNNNTAC 2 cut(s) 1445, 1477
BbrPI CACGTG 1 cut(s) 983
BbsI GAAGAC 1 cut(s) 1388
Bbv12I GWGCWC 1 cut(s) 375
BccI CCATC 3 cut(s) 152, 193, 1576
BciT130I CCWGG 1 cut(s) 1542
BclI TGATCA 2 cut(s) 709, 927
BcoDI GTCTC 3 cut(s) 823, 906, 1434
BfaI CTAG 2 cut(s) 872, 909
BfmI CTRYAG 1 cut(s) 555
BfrI CTTAAG 3 cut(s) 100, 934, 1424
BglII AGATCT 1 cut(s) 874
BisI GCNGC 1 cut(s) 1304
BlpI GCTNAGC 1 cut(s) 1077
BlsI GCNGC 1 cut(s) 1305
Bme1390I CCNGG 1 cut(s) 1542
Bme18I GGWCC 1 cut(s) 129
BmgT120I GGNCC 3 cut(s) 129, 1591, 1592
BmiI GGNNCC 2 cut(s) 1088, 1593
BmrFI CCNGG 1 cut(s) 1542
BmsI GCATC 3 cut(s) 949, 1189, 1376
BpiI GAAGAC 1 cut(s) 1388
BplI GAGNNNNNCTC 2 cut(s) 216, 248
BpmI CTGGAG 1 cut(s) 1563
Bpu1102I GCTNAGC 1 cut(s) 1077
Bpu14I TTCGAA 1 cut(s) 857
BpuEI CTTGAG 2 cut(s) 1151, 1454
Bsa29I ATCGAT 1 cut(s) 1515
BsaAI YACGTR 2 cut(s) 728, 983
BsaBI GATNNNNATC 1 cut(s) 1511
BsaJI CCNNGG 2 cut(s) 1404, 1540
BsaXI ACNNNNNCTCC 2 cut(s) 1045, 1075
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 104
Bse3DI GCAATG 1 cut(s) 1013
Bse8I GATNNNNATC 1 cut(s) 1511
BseBI CCWGG 1 cut(s) 1542
BseCI ATCGAT 1 cut(s) 1515
BseDI CCNNGG 2 cut(s) 1404, 1540
BseGI GGATG 7 cut(s) 204, 261, 485, 517, 647, 1382, 1587
BseJI GATNNNNATC 1 cut(s) 1511
BseLI CCNNNNNNNGG 2 cut(s) 103, 104
BseMI GCAATG 1 cut(s) 1013
BseMII CTCAG 1 cut(s) 1068
BseRI GAGGAG 1 cut(s) 1253
BseSI GKGCMC 1 cut(s) 1595
BseYI CCCAGC 2 cut(s) 960, 1081
BsgI GTGCAG 1 cut(s) 565
BshFI GGCC 1 cut(s) 1593
BshVI ATCGAT 1 cut(s) 1515
BsiHKAI GWGCWC 1 cut(s) 375
BsiSI CCGG 1 cut(s) 489
BslFI GGGAC 1 cut(s) 1119
BslI CCNNNNNNNGG 2 cut(s) 103, 104
BsmAI GTCTC 3 cut(s) 823, 906, 1434
BsmFI GGGAC 1 cut(s) 1119
BsmI GAATGC 1 cut(s) 981
BsnI GGCC 1 cut(s) 1593
Bsp119I TTCGAA 1 cut(s) 857
Bsp120I GGGCCC 1 cut(s) 1591
Bsp1286I GDGCHC 2 cut(s) 375, 1595
Bsp143I GATC 8 cut(s) 548, 709, 802, 874, 927, 1408, 1512, 1516
Bsp1720I GCTNAGC 1 cut(s) 1077
BspACI CCGC 3 cut(s) 1059, 1303, 1400
BspANI GGCC 1 cut(s) 1593
BspCNI CTCAG 1 cut(s) 1069
BspDI ATCGAT 1 cut(s) 1515
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 2 cut(s) 1088, 1593
BspPI GGATC 3 cut(s) 543, 1416, 1520
BspT104I TTCGAA 1 cut(s) 857
BspTI CTTAAG 3 cut(s) 100, 934, 1424
BsrDI GCAATG 1 cut(s) 1013
BssECI CCNNGG 2 cut(s) 1404, 1540
BssMI GATC 8 cut(s) 548, 709, 802, 874, 927, 1408, 1512, 1516
BssT1I CCWWGG 1 cut(s) 1404
Bst2UI CCWGG 1 cut(s) 1542
Bst4CI ACNGT 6 cut(s) 64, 93, 503, 556, 1300, 1531
Bst6I CTCTTC 1 cut(s) 821
BstAFI CTTAAG 3 cut(s) 100, 934, 1424
BstBAI YACGTR 2 cut(s) 728, 983
BstBI TTCGAA 1 cut(s) 857
BstC8I GCNNGC 1 cut(s) 664
BstDEI CTNAG 3 cut(s) 359, 806, 1077
BstF5I GGATG 7 cut(s) 204, 261, 485, 517, 647, 1382, 1587
BstKTI GATC 8 cut(s) 551, 712, 805, 877, 930, 1411, 1515, 1519
BstMAI GTCTC 3 cut(s) 823, 906, 1434
BstMBI GATC 8 cut(s) 548, 709, 802, 874, 927, 1408, 1512, 1516
BstMWI GCNNNNNNNGC 1 cut(s) 1073
BstNI CCWGG 1 cut(s) 1542
BstNSI RCATGY 1 cut(s) 1136
BstSCI CCNGG 1 cut(s) 1540
BstSFI CTRYAG 1 cut(s) 555
BstSLI GKGCMC 1 cut(s) 1595
BstV2I GAAGAC 1 cut(s) 1388
BstX2I RGATCY 2 cut(s) 548, 874
BstYI RGATCY 2 cut(s) 548, 874
Bsu15I ATCGAT 1 cut(s) 1515
BsuRI GGCC 1 cut(s) 1593
BsuTUI ATCGAT 1 cut(s) 1515
BtgZI GCGATG 1 cut(s) 83
BtsCI GGATG 7 cut(s) 204, 261, 485, 517, 647, 1382, 1587
BtsIMutI CAGTG 1 cut(s) 552
Cac8I GCNNGC 1 cut(s) 664
CciI TCATGA 1 cut(s) 274
Cfr13I GGNCC 3 cut(s) 129, 1591, 1592
ClaI ATCGAT 1 cut(s) 1515
Csp6I GTAC 6 cut(s) 54, 94, 440, 1011, 1158, 1462
CspCI CAANNNNNGTGG 2 cut(s) 541, 576
CviAII CATG 5 cut(s) 275, 584, 599, 823, 1133
CviJI RGCY 9 cut(s) 126, 411, 565, 592, 701, 895, 1081, 1438, 1593
CviKI_1 RGCY 9 cut(s) 126, 411, 565, 592, 701, 895, 1081, 1438, 1593
CviQI GTAC 6 cut(s) 54, 94, 440, 1011, 1158, 1462
DdeI CTNAG 3 cut(s) 359, 806, 1077
DpnI GATC 8 cut(s) 550, 711, 804, 876, 929, 1410, 1514, 1518
DpnII GATC 8 cut(s) 548, 709, 802, 874, 927, 1408, 1512, 1516
Eam1104I CTCTTC 1 cut(s) 821
EarI CTCTTC 1 cut(s) 821
EciI GGCGGA 1 cut(s) 1389
Eco130I CCWWGG 1 cut(s) 1404
Eco24I GRGCYC 1 cut(s) 1595
Eco32I GATATC 2 cut(s) 433, 797
Eco47I GGWCC 1 cut(s) 129
Eco57I CTGAAG 2 cut(s) 1307, 1596
Eco72I CACGTG 1 cut(s) 983
EcoO109I RGGNCCY 1 cut(s) 1591
EcoRI GAATTC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 1540
EcoRV GATATC 2 cut(s) 433, 797
EcoT14I CCWWGG 1 cut(s) 1404
EcoT22I ATGCAT 1 cut(s) 736
EcoT38I GRGCYC 1 cut(s) 1595
ErhI CCWWGG 1 cut(s) 1404
FaeI CATG 5 cut(s) 278, 587, 602, 826, 1136
FaqI GGGAC 1 cut(s) 1119
FatI CATG 5 cut(s) 274, 583, 598, 822, 1132
FbaI TGATCA 2 cut(s) 709, 927
Fnu4HI GCNGC 1 cut(s) 1304
FokI GGATG 7 cut(s) 211, 268, 472, 524, 634, 1389, 1594
FriOI GRGCYC 1 cut(s) 1595
Fsp4HI GCNGC 1 cut(s) 1304
FspBI CTAG 2 cut(s) 872, 909
GluI GCNGC 1 cut(s) 1304
GsaI CCCAGC 2 cut(s) 964, 1085
GsuI CTGGAG 1 cut(s) 1563
HaeIII GGCC 1 cut(s) 1593
HapII CCGG 1 cut(s) 489
Hin1II CATG 5 cut(s) 278, 587, 602, 826, 1136
HincII GTYRAC 1 cut(s) 1296
HindII GTYRAC 1 cut(s) 1296
HindIII AAGCTT 2 cut(s) 590, 699
HinfI GANTC 1 cut(s) 1145
HpaII CCGG 1 cut(s) 489
HphI GGTGA 3 cut(s) 704, 719, 1004
Hpy166II GTNNAC 3 cut(s) 1160, 1225, 1296
Hpy188I TCNGA 4 cut(s) 1144, 1287, 1471, 1576
Hpy188III TCNNGA 7 cut(s) 155, 275, 800, 836, 1204, 1364, 1433
Hpy8I GTNNAC 3 cut(s) 1160, 1225, 1296
HpyAV CCTTC 2 cut(s) 1428, 1571
HpyCH4III ACNGT 6 cut(s) 64, 93, 503, 556, 1300, 1531
HpyCH4IV ACGT 3 cut(s) 727, 982, 1393
HpyCH4V TGCA 7 cut(s) 121, 262, 518, 546, 734, 1018, 1270
HpyF10VI GCNNNNNNNGC 1 cut(s) 1073
HpyF3I CTNAG 3 cut(s) 359, 806, 1077
HpySE526I ACGT 3 cut(s) 727, 982, 1393
Hsp92II CATG 5 cut(s) 278, 587, 602, 826, 1136
Ksp22I TGATCA 2 cut(s) 709, 927
Kzo9I GATC 8 cut(s) 548, 709, 802, 874, 927, 1408, 1512, 1516
LmnI GCTCC 1 cut(s) 378
LweI GCATC 3 cut(s) 949, 1189, 1376
MaeI CTAG 2 cut(s) 872, 909
MaeII ACGT 3 cut(s) 727, 982, 1393
MaeIII GTNAC 1 cut(s) 818
MalI GATC 8 cut(s) 550, 711, 804, 876, 929, 1410, 1514, 1518
MboI GATC 8 cut(s) 548, 709, 802, 874, 927, 1408, 1512, 1516
MboII GAAGA 6 cut(s) 344, 680, 838, 1229, 1332, 1388
MfeI CAATTG 2 cut(s) 747, 1042
MflI RGATCY 2 cut(s) 548, 874
MhlI GDGCHC 2 cut(s) 375, 1595
MmeI TCCRAC 3 cut(s) 829, 1173, 1437
Mph1103I ATGCAT 1 cut(s) 736
MspCI CTTAAG 3 cut(s) 100, 934, 1424
MspI CCGG 1 cut(s) 489
MspR9I CCNGG 1 cut(s) 1542
MunI CAATTG 2 cut(s) 747, 1042
Mva1269I GAATGC 1 cut(s) 981
MvaI CCWGG 1 cut(s) 1542
MwoI GCNNNNNNNGC 1 cut(s) 1073
NdeII GATC 8 cut(s) 548, 709, 802, 874, 927, 1408, 1512, 1516
NlaIII CATG 5 cut(s) 278, 587, 602, 826, 1136
NlaIV GGNNCC 2 cut(s) 1088, 1593
NsiI ATGCAT 1 cut(s) 736
NspI RCATGY 1 cut(s) 1136
NspV TTCGAA 1 cut(s) 857
PagI TCATGA 1 cut(s) 274
PctI GAATGC 1 cut(s) 981
PfeI GAWTC 1 cut(s) 1145
PkrI GCNGC 1 cut(s) 1305
PmaCI CACGTG 1 cut(s) 983
PmlI CACGTG 1 cut(s) 983
Ppu21I YACGTR 2 cut(s) 728, 983
PshBI ATTAAT 1 cut(s) 41
PsiI TTATAA 1 cut(s) 1250
Psp6I CCWGG 1 cut(s) 1540
PspCI CACGTG 1 cut(s) 983
PspFI CCCAGC 2 cut(s) 960, 1081
PspGI CCWGG 1 cut(s) 1540
PspN4I GGNNCC 2 cut(s) 1088, 1593
PspOMI GGGCCC 1 cut(s) 1591
PspPI GGNCC 3 cut(s) 129, 1591, 1592
PsuI RGATCY 2 cut(s) 548, 874
RsaI GTAC 6 cut(s) 55, 95, 441, 1012, 1159, 1463
RsaNI GTAC 6 cut(s) 54, 94, 440, 1011, 1158, 1462
SatI GCNGC 1 cut(s) 1304
Sau3AI GATC 8 cut(s) 548, 709, 802, 874, 927, 1408, 1512, 1516
Sau96I GGNCC 3 cut(s) 129, 1591, 1592
ScrFI CCNGG 1 cut(s) 1542
SduI GDGCHC 2 cut(s) 375, 1595
SfaNI GCATC 3 cut(s) 949, 1189, 1376
SfcI CTRYAG 1 cut(s) 555
SfuI TTCGAA 1 cut(s) 857
SinI GGWCC 1 cut(s) 129
SmlI CTYRAG 5 cut(s) 100, 934, 1166, 1424, 1433
SmoI CTYRAG 5 cut(s) 100, 934, 1166, 1424, 1433
SsiI CCGC 3 cut(s) 1059, 1303, 1400
SspI AATATT 3 cut(s) 39, 527, 1354
SspMI CTAG 2 cut(s) 872, 909
StyD4I CCNGG 1 cut(s) 1540
StyI CCWWGG 1 cut(s) 1404
TaaI ACNGT 6 cut(s) 64, 93, 503, 556, 1300, 1531
TaiI ACGT 3 cut(s) 730, 985, 1396
TaqI TCGA 4 cut(s) 629, 857, 1365, 1515
TatI WGTACW 1 cut(s) 1461
TauI GCSGC 1 cut(s) 1306
TfiI GAWTC 1 cut(s) 1145
TscAI CASTG 1 cut(s) 559
TspDTI ATGAA 6 cut(s) 129, 291, 466, 572, 797, 839
TspGWI ACGGA 3 cut(s) 787, 1242, 1456
TspRI CASTG 1 cut(s) 559
Vha464I CTTAAG 3 cut(s) 100, 934, 1424
VpaK11BI GGWCC 1 cut(s) 129
VspI ATTAAT 1 cut(s) 41
XapI RAATTY 5 cut(s) 175, 577, 757, 859, 1444
XceI RCATGY 1 cut(s) 1136
XspI CTAG 2 cut(s) 872, 909
Zsp2I ATGCAT 1 cut(s) 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.