Rh4CG236600

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000725
Physical Location & Seq
Forward (+)
48089994 .. 48091660
1667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG236600.1

Sequence Viewer

Length: 342 bp
ATGGTTGAAGCAGTTCCATTTGGCACTGCAGCTGACATACTCATCAAGCTCGGGTCTTCCACTTTCCGGGAGCTCGGGCTCGTCTACGGCGTCAACAAGGAAATGAAGAAGCTTGAGAACACTCTCTCCTCCATCAAAGCTGTTCTCTTAGACGCAGAGGAGAAGCAAGAGAAGAGCCATCTGGTGCAGGACTGGATCAGGAAGCTCAGCGAGGTTGTGTACGAGGCCGATGATTTGTTGGATGCATTCGAAACCAAAGCTAGGCAGCATGAGAATCATCAGTTGTTATCTGCCTTCTTCATGGGAAGTTCCGATAGCGTTGCTCAAGGCAAAGAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

113

Amino Acids

12.63

Weight (kDa)

4.92

Isoelectric Point (pI)

28.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 14 - 94 4.2e-24 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000725)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g16700
malus_domestica MD02G1307600.v1.1 MD03G1278800.v1.1 MD03G1279100.v1.1 MD03G1279600.v1.1 MD03G1280000.v1.1 MD03G1280200.v1.1 MD07G1008400.v1.1 MD07G1014900.v1.1 MD07G1015700.v1.1 MD07G1016100.v1.1 MD07G1016200.v1.1 MD07G1016500.v1.1 MD07G1016600.v1.1 MD07G1016700.v1.1 MD07G1017400.v1.1 MD07G1019600.v1.1 MD07G1019800.v1.1 MD07G1023700.v1.1 MD07G1024100.v1.1 MD07G1024300.v1.1 MD07G1024400.v1.1 MD14G1086900.v1.1 MD14G1087000.v1.1 MD16G1179200.v1.1 MD17G1030800.v1.1
prunus_persica Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011000_v2.0.a1 Prupe.2G011400_v2.0.a1 Prupe.2G011500_v2.0.a1 Prupe.2G013800_v2.0.a1 Prupe.2G013800_v2.0.a1 Prupe.2G013800_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G013900_v2.0.a1 Prupe.2G014000_v2.0.a1 Prupe.2G014100_v2.0.a1
pyrus_communis pycom02g25880 pycom07g00690 pycom07g00720 pycom07g01130 pycom07g01140 pycom07g01150 pycom07g01160 pycom07g01260 pycom07g01280 pycom07g01300 pycom07g01320 pycom07g01550 pycom07g01790 pycom07g01810 pycom07g01840 pycom07g01850 pycom07g01870 pycom07g01880 pycom07g01890 pycom13g15290 pycom16g15040
rosa_chinensis RchiOBHm_Chr4g0420141
rosa_multiflora Rmu_sc0001252.1_g000002
rosa_roxburghii Rroxscaffold_1G00012760
rosa_rugosa Rorug04G0162600
rosa_samantha Rh4AG223400 Rh4BG225900 Rh4CG236600 Rh4DG222200
rosa_wichuraiana Rw4G019230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 84
AclWI GGATC 1 cut(s) 203
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 2 cut(s) 66, 261
AgsI TTSAA 1 cut(s) 8
AloI GAACNNNNNNTCC 2 cut(s) 110, 142
AluBI AGCT 7 cut(s) 32, 49, 73, 112, 140, 205, 260
AluI AGCT 7 cut(s) 32, 49, 73, 112, 140, 205, 260
Alw21I GWGCWC 1 cut(s) 75
AlwI GGATC 1 cut(s) 203
Ama87I CYCGRG 2 cut(s) 50, 74
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 2 cut(s) 29, 265
Asp700I GAANNNNTTC 1 cut(s) 12
AsuC2I CCSGG 1 cut(s) 68
AsuII TTCGAA 1 cut(s) 249
AvaI CYCGRG 2 cut(s) 50, 74
BanII GRGCYC 2 cut(s) 75, 81
BbsI GAAGAC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 75
BbvI GCAGC 2 cut(s) 41, 277
BccI CCATC 2 cut(s) 140, 186
BceAI ACGGC 1 cut(s) 103
BcgI CGANNNNNNTGC 2 cut(s) 302, 336
BcnI CCSGG 1 cut(s) 68
BfaI CTAG 2 cut(s) 261, 340
BfmI CTRYAG 1 cut(s) 27
BisI GCNGC 2 cut(s) 30, 266
BlpI GCTNAGC 1 cut(s) 206
BlsI GCNGC 2 cut(s) 31, 267
Bme1390I CCNGG 1 cut(s) 68
BmeT110I CYCGRG 2 cut(s) 50, 74
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 48
Bpu1102I GCTNAGC 1 cut(s) 206
Bpu14I TTCGAA 1 cut(s) 249
BpuEI CTTGAG 2 cut(s) 134, 309
BpuMI CCSGG 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 261
Bse1I ACTGG 1 cut(s) 197
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 2 cut(s) 66, 261
BseMII CTCAG 1 cut(s) 220
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 2 cut(s) 118, 173
BseXI GCAGC 2 cut(s) 41, 277
BsgI GTGCAG 1 cut(s) 206
BshFI GGCC 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 75
BsiHKCI CYCGRG 2 cut(s) 50, 74
BsiSI CCGG 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 66, 261
BsmI GAATGC 1 cut(s) 245
BsnI GGCC 1 cut(s) 227
BsoBI CYCGRG 2 cut(s) 50, 74
Bsp119I TTCGAA 1 cut(s) 249
Bsp1286I GDGCHC 2 cut(s) 75, 81
Bsp143I GATC 1 cut(s) 195
Bsp1720I GCTNAGC 1 cut(s) 206
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 219
BspMAI CTGCAG 1 cut(s) 31
BspPI GGATC 1 cut(s) 203
BspQI GCTCTTC 1 cut(s) 167
BspT104I TTCGAA 1 cut(s) 249
BsrI ACTGG 1 cut(s) 197
BssMI GATC 1 cut(s) 195
BssNI GRCGYC 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 167
BstACI GRCGYC 1 cut(s) 90
BstBI TTCGAA 1 cut(s) 249
BstDEI CTNAG 2 cut(s) 148, 206
BstF5I GGATG 1 cut(s) 247
BstKTI GATC 1 cut(s) 198
BstMBI GATC 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 66
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 41, 277
BstV2I GAAGAC 1 cut(s) 48
BsuRI GGCC 1 cut(s) 227
BtsCI GGATG 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
CseI GACGC 2 cut(s) 79, 161
Csp6I GTAC 1 cut(s) 220
CviAII CATG 2 cut(s) 269, 301
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 2 cut(s) 148, 206
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Ecl136II GAGCTC 1 cut(s) 73
Eco24I GRGCYC 2 cut(s) 75, 81
Eco53kI GAGCTC 1 cut(s) 73
Eco88I CYCGRG 2 cut(s) 50, 74
EcoICRI GAGCTC 1 cut(s) 73
EcoT22I ATGCAT 1 cut(s) 247
EcoT38I GRGCYC 2 cut(s) 75, 81
FaeI CATG 2 cut(s) 272, 304
FaiI YATR 3 cut(s) 38, 270, 302
FatI CATG 2 cut(s) 268, 300
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 2 cut(s) 30, 266
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 2 cut(s) 75, 81
Fsp4HI GCNGC 2 cut(s) 30, 266
FspBI CTAG 2 cut(s) 261, 340
GluI GCNGC 2 cut(s) 30, 266
HaeIII GGCC 1 cut(s) 227
HapII CCGG 1 cut(s) 67
HgaI GACGC 2 cut(s) 79, 161
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 2 cut(s) 272, 304
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 1 cut(s) 274
HpaII CCGG 1 cut(s) 67
Hpy166II GTNNAC 3 cut(s) 85, 94, 220
Hpy188I TCNGA 1 cut(s) 313
Hpy188III TCNNGA 1 cut(s) 199
Hpy8I GTNNAC 3 cut(s) 85, 94, 220
HpyAV CCTTC 1 cut(s) 304
HpyCH4V TGCA 3 cut(s) 29, 187, 245
HpyF3I CTNAG 2 cut(s) 148, 206
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 2 cut(s) 272, 304
Kzo9I GATC 1 cut(s) 195
LguI GCTCTTC 1 cut(s) 167
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 5 cut(s) 80, 167, 173, 178, 184
Lsp1109I GCAGC 2 cut(s) 41, 277
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 261, 340
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MboII GAAGA 4 cut(s) 48, 118, 184, 289
MhlI GDGCHC 2 cut(s) 75, 81
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 4 cut(s) 139, 151, 205, 217
Mph1103I ATGCAT 1 cut(s) 247
MroXI GAANNNNTTC 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 68
Mva1269I GAATGC 1 cut(s) 245
NciI CCSGG 1 cut(s) 68
NdeII GATC 1 cut(s) 195
NlaIII CATG 2 cut(s) 272, 304
NsiI ATGCAT 1 cut(s) 247
NspV TTCGAA 1 cut(s) 249
PciSI GCTCTTC 1 cut(s) 167
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PctI GAATGC 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 274
PfoI TCCNGGA 1 cut(s) 66
PkrI GCNGC 2 cut(s) 31, 267
Psp124BI GAGCTC 1 cut(s) 75
PstI CTGCAG 1 cut(s) 31
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
SacI GAGCTC 1 cut(s) 75
SapI GCTCTTC 1 cut(s) 167
SatI GCNGC 2 cut(s) 30, 266
Sau3AI GATC 1 cut(s) 195
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 2 cut(s) 75, 81
SetI ASST 8 cut(s) 34, 51, 75, 114, 142, 207, 216, 262
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 1 cut(s) 27
SfuI TTCGAA 1 cut(s) 249
SmlI CTYRAG 2 cut(s) 113, 324
SmoI CTYRAG 2 cut(s) 113, 324
SspMI CTAG 2 cut(s) 261, 340
SstI GAGCTC 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 66
TaqI TCGA 1 cut(s) 249
TfiI GAWTC 1 cut(s) 274
TscAI CASTG 1 cut(s) 31
TseI GCWGC 2 cut(s) 29, 265
TspDTI ATGAA 2 cut(s) 119, 289
TspRI CASTG 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 12
XspI CTAG 2 cut(s) 261, 340
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.