Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Forward (+)

3517085 .. 3518543

Gene Structure 1459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1020600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGCTAAGTTTTGCACTTATTATTCTAGCAATTACTGGTTTTGTTATTTATAGATACTGTGTTGCAGATTACGAAAAGATTTCGAATTCAAAAAATGATGGGTTTGTAGAAGATGTCACGCTGCGATCATATACATATTGTAAGCTTGAAAAGGCAACCAAAGGTTTTAGTGATCAAGTGGGCAAAAGACCATTTGGGACATTTTATAAAAGGGTCATACCATCAAATGGTGGGAGAGTAGTGGCTATCAAGAAACTAGAGAAGGTGATGGATCAAGGAGACTGGGAATTCCGAAATGAGATGAACGCAATAGGAAGGACGCATCATAAAAATCTGTGTGACACACAGATCATCCACTGTGACATCAAATCGGAAAATATACTAATGAGTGACCAAAAATGTGCAAAGCTTGTTGATTTTGGTCTTGCCAAGCTGCTAAAGCTTGACCAAACTAGGACATATACCGGGTTAAGAGGAACATGGGGTTATGTTGCACCTGAGTGGCATAGAAACGTTCCCATAACAGTGAAAACAAATGTATACAGCTTTGGGGTTGTGTTATTGGAGAATATGCTGCAGAAGATGTGTGAATATGGACATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

202

Amino Acids

23.02

Weight (kDa)

9.05

Isoelectric Point (pI)

24.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	112 - 192	5.7e-15	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	115 - 195	1.4e-19	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	207
AccB7I	CCANNNNNTGG	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	540
AclI	AACGTT	1 cut(s)	513
AclWI	GGATC	1 cut(s)	279
AcsI	RAATTY	2 cut(s)	85, 287
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	2 cut(s)	90, 149
AleI	CACNNNNGTG	1 cut(s)	499
AluBI	AGCT	5 cut(s)	145, 409, 433, 442, 546
AluI	AGCT	5 cut(s)	145, 409, 433, 442, 546
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	279
ApeKI	GCWGC	3 cut(s)	121, 433, 574
ApoI	RAATTY	2 cut(s)	85, 287
AsuC2I	CCSGG	1 cut(s)	466
AsuHPI	GGTGA	1 cut(s)	277
AsuII	TTCGAA	1 cut(s)	83
BbvI	GCAGC	3 cut(s)	108, 420, 561
BccI	CCATC	3 cut(s)	92, 229, 262
BclI	TGATCA	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	466
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	3 cut(s)	26, 257, 453
BfmI	CTRYAG	1 cut(s)	575
BisI	GCNGC	3 cut(s)	122, 434, 575
BlsI	GCNGC	3 cut(s)	123, 435, 576
Bme1390I	CCNGG	1 cut(s)	466
BmrFI	CCNGG	1 cut(s)	466
BmrI	ACTGGG	1 cut(s)	292
BmsI	GCATC	1 cut(s)	331
BmuI	ACTGGG	1 cut(s)	292
Bpu14I	TTCGAA	1 cut(s)	83
BpuMI	CCSGG	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse1I	ACTGG	2 cut(s)	40, 287
BseGI	GGATG	1 cut(s)	351
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMII	CTCAG	1 cut(s)	489
BseNI	ACTGG	2 cut(s)	40, 287
BseXI	GCAGC	3 cut(s)	108, 420, 561
BsiSI	CCGG	1 cut(s)	465
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	211
Bsp119I	TTCGAA	1 cut(s)	83
Bsp143I	GATC	4 cut(s)	125, 172, 271, 348
BspCNI	CTCAG	1 cut(s)	490
BspMAI	CTGCAG	1 cut(s)	579
BspPI	GGATC	1 cut(s)	279
BspT104I	TTCGAA	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	40, 287
BssMI	GATC	4 cut(s)	125, 172, 271, 348
BssNAI	GTATAC	1 cut(s)	541
Bst1107I	GTATAC	1 cut(s)	541
Bst4CI	ACNGT	3 cut(s)	59, 359, 526
BstBI	TTCGAA	1 cut(s)	83
BstDEI	CTNAG	2 cut(s)	5, 498
BstF5I	GGATG	1 cut(s)	351
BstKTI	GATC	4 cut(s)	128, 175, 274, 351
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	4 cut(s)	125, 172, 271, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	464
BstSFI	CTRYAG	1 cut(s)	575
BstV1I	GCAGC	3 cut(s)	108, 420, 561
BstZ17I	GTATAC	1 cut(s)	541
BtsCI	GGATG	1 cut(s)	351
BtsIMutI	CAGTG	2 cut(s)	355, 531
CseI	GACGC	1 cut(s)	328
CviAII	CATG	1 cut(s)	480
CviJI	RGCY	6 cut(s)	145, 245, 409, 433, 442, 546
CviKI_1	RGCY	6 cut(s)	145, 245, 409, 433, 442, 546
DdeI	CTNAG	2 cut(s)	5, 498
DpnI	GATC	4 cut(s)	127, 174, 273, 350
DpnII	GATC	4 cut(s)	125, 172, 271, 348
EcoRI	GAATTC	2 cut(s)	85, 287
FaeI	CATG	1 cut(s)	483
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	1 cut(s)	479
FbaI	TGATCA	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	540
Fnu4HI	GCNGC	3 cut(s)	122, 434, 575
FokI	GGATG	1 cut(s)	338
Fsp4HI	GCNGC	3 cut(s)	122, 434, 575
FspBI	CTAG	3 cut(s)	26, 257, 453
GluI	GCNGC	3 cut(s)	122, 434, 575
HapII	CCGG	1 cut(s)	465
HgaI	GACGC	1 cut(s)	328
Hin1II	CATG	1 cut(s)	483
HindIII	AAGCTT	3 cut(s)	143, 407, 440
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	1 cut(s)	541
Hpy188I	TCNGA	2 cut(s)	293, 373
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	1 cut(s)	541
HpyAV	CCTTC	2 cut(s)	256, 309
HpyCH4III	ACNGT	3 cut(s)	59, 359, 526
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	5 cut(s)	14, 65, 404, 494, 577
HpyF10VI	GCNNNNNNNGC	1 cut(s)	439
HpyF3I	CTNAG	2 cut(s)	5, 498
HpySE526I	ACGT	1 cut(s)	513
Hsp92II	CATG	1 cut(s)	483
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	4 cut(s)	125, 172, 271, 348
LpnPI	CCDG	4 cut(s)	21, 268, 478, 510
Lsp1109I	GCAGC	3 cut(s)	108, 420, 561
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	3 cut(s)	26, 257, 453
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	4 cut(s)	115, 338, 359, 389
MalI	GATC	4 cut(s)	127, 174, 273, 350
MboI	GATC	4 cut(s)	125, 172, 271, 348
MboII	GAAGA	2 cut(s)	122, 592
MluCI	AATT	3 cut(s)	30, 85, 287
MnlI	CCTC	1 cut(s)	467
MseI	TTAA	1 cut(s)	470
MslI	CAYNNNNRTG	2 cut(s)	499, 524
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	1 cut(s)	466
MwoI	GCNNNNNNNGC	1 cut(s)	439
NciI	CCSGG	1 cut(s)	466
NdeII	GATC	4 cut(s)	125, 172, 271, 348
NlaIII	CATG	1 cut(s)	483
NmuCI	GTSAC	4 cut(s)	115, 338, 359, 389
NspV	TTCGAA	1 cut(s)	83
OliI	CACNNNNGTG	1 cut(s)	499
PflMI	CCANNNNNTGG	1 cut(s)	227
PkrI	GCNGC	3 cut(s)	123, 435, 576
PsiI	TTATAA	1 cut(s)	207
Psp1406I	AACGTT	1 cut(s)	513
PstI	CTGCAG	1 cut(s)	579
RseI	CAYNNNNRTG	2 cut(s)	499, 524
SaqAI	TTAA	1 cut(s)	470
SatI	GCNGC	3 cut(s)	122, 434, 575
Sau3AI	GATC	4 cut(s)	125, 172, 271, 348
ScrFI	CCNGG	1 cut(s)	466
SetI	ASST	9 cut(s)	147, 166, 267, 411, 435, 444, 499, 516, 548
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	575
SfuI	TTCGAA	1 cut(s)	83
SmiMI	CAYNNNNRTG	2 cut(s)	499, 524
Sse9I	AATT	3 cut(s)	30, 85, 287
SspMI	CTAG	3 cut(s)	26, 257, 453
StyD4I	CCNGG	1 cut(s)	464
TaaI	ACNGT	3 cut(s)	59, 359, 526
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	1 cut(s)	83
TasI	AATT	3 cut(s)	30, 85, 287
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TscAI	CASTG	2 cut(s)	362, 531
TseFI	GTSAC	4 cut(s)	115, 338, 359, 389
TseI	GCWGC	3 cut(s)	121, 433, 574
Tsp45I	GTSAC	4 cut(s)	115, 338, 359, 389
TspDTI	ATGAA	1 cut(s)	317
TspRI	CASTG	2 cut(s)	362, 531
Van91I	CCANNNNNTGG	1 cut(s)	227
XapI	RAATTY	2 cut(s)	85, 287
XmiI	GTMKAC	1 cut(s)	540
XspI	CTAG	3 cut(s)	26, 257, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.