Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004248.1

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Reverse (-)

65039 .. 66025

Gene Structure 987 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004248.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atggcacttactggtgttgttatatatagatatcgtgtttgggattaccgaaaagttacaaattcagctggtgaagggttaattaaaggtgttacactgcggccatatacatattgtgaacttgaaagggcaactaaaggcttcaccaatcaagtgggaaaaggagcttttgggacagtttttaaaggggtgattggtgggagagtagcggcaatcaagcaactagagacagtggtggatgaaggagagcgagagtttcgtaatgagattaatgcaattgggagaactcatcacaagaatctggtgaaattgcttcgctactgtcatgatggaacaaataggcttctggtttatgagtacatgaccaacggttcacttgcgaatttctttttcaaatcttatggtggaaggccaacttgggaggaaagagtcagtatagccctcaatgtagctcaagctttgggattgtattgttggagatcatatgctgtcagagtttcaaccatggacattcccaaggatcaagcaactcttgagaattggatgtaccattgtttggaggccaatgaactggataagctagtgaaggacgatgatgagattgacacgaacaaactacgggagatggttaggcttggtctttgctgcatccaggaggagccatcattgcgcccttcaatgaagaaggaggtactaatgctggaagggatactggagataccatcccctccaaattgtttcagttccagacattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

251

Amino Acids

28.66

Weight (kDa)

8.4

Isoelectric Point (pI)

24.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	556
AciI	CCGC	2 cut(s)	100, 209
AclWI	GGATC	1 cut(s)	528
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	2 cut(s)	61, 382
AfaI	GTAC	3 cut(s)	359, 548, 693
AfiI	CCNNNNNNNGG	1 cut(s)	556
AgsI	TTSAA	4 cut(s)	125, 394, 501, 678
AjnI	CCWGG	1 cut(s)	651
AjuI	GAANNNNNNNTTGG	2 cut(s)	400, 432
AluBI	AGCT	5 cut(s)	68, 167, 452, 458, 580
AluI	AGCT	5 cut(s)	68, 167, 452, 458, 580
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	528
AoxI	GGCC	3 cut(s)	101, 410, 561
ApeKI	GCWGC	1 cut(s)	645
ApoI	RAATTY	2 cut(s)	61, 382
AseI	ATTAAT	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	672
AsuHPI	GGTGA	4 cut(s)	83, 136, 202, 316
BbvI	GCAGC	1 cut(s)	632
BccI	CCATC	4 cut(s)	323, 619, 670, 730
BciT130I	CCWGG	1 cut(s)	653
BciVI	GTATCC	1 cut(s)	702
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	2 cut(s)	224, 581
BfuI	GTATCC	1 cut(s)	702
BisI	GCNGC	3 cut(s)	101, 210, 646
BlsI	GCNGC	3 cut(s)	102, 211, 647
Bme1390I	CCNGG	1 cut(s)	653
BmiI	GGNNCC	1 cut(s)	660
BmrFI	CCNGG	1 cut(s)	653
BmsI	GCATC	1 cut(s)	657
BpmI	CTGGAG	1 cut(s)	734
BpuEI	CTTGAG	2 cut(s)	438, 554
BsaJI	CCNNGG	2 cut(s)	504, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	556
Bse1I	ACTGG	3 cut(s)	16, 576, 717
Bse3DI	GCAATG	1 cut(s)	665
BseBI	CCWGG	1 cut(s)	653
BseDI	CCNNGG	2 cut(s)	504, 516
BseGI	GGATG	4 cut(s)	244, 549, 648, 722
BseLI	CCNNNNNNNGG	1 cut(s)	556
BseMI	GCAATG	1 cut(s)	665
BseNI	ACTGG	3 cut(s)	16, 576, 717
BseRI	GAGGAG	1 cut(s)	671
BseXI	GCAGC	1 cut(s)	632
BshFI	GGCC	3 cut(s)	103, 412, 563
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	556
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	3 cut(s)	103, 412, 563
Bsp143I	GATC	2 cut(s)	479, 520
Bsp19I	CCATGG	1 cut(s)	504
BspACI	CCGC	2 cut(s)	100, 209
BspANI	GGCC	3 cut(s)	103, 412, 563
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	660
BspPI	GGATC	1 cut(s)	528
BsrDI	GCAATG	1 cut(s)	665
BsrI	ACTGG	3 cut(s)	16, 576, 717
BssECI	CCNNGG	2 cut(s)	504, 516
BssMI	GATC	2 cut(s)	479, 520
BssT1I	CCWWGG	2 cut(s)	504, 516
Bst2UI	CCWGG	1 cut(s)	653
Bst4CI	ACNGT	4 cut(s)	178, 232, 323, 371
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	4 cut(s)	244, 549, 648, 722
BstHHI	GCGC	1 cut(s)	672
BstKTI	GATC	2 cut(s)	482, 523
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	2 cut(s)	479, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	667
BstNI	CCWGG	1 cut(s)	653
BstSCI	CCNGG	1 cut(s)	651
BstV1I	GCAGC	1 cut(s)	632
BstXI	CCANNNNNNTGG	2 cut(s)	154, 571
BsuI	GTATCC	1 cut(s)	702
BsuRI	GGCC	3 cut(s)	103, 412, 563
BtgI	CCRYGG	1 cut(s)	504
BtsCI	GGATG	4 cut(s)	244, 549, 648, 722
BtsI	GCAGTG	1 cut(s)	95
BtsIMutI	CAGTG	2 cut(s)	95, 237
CciI	TCATGA	1 cut(s)	325
CfoI	GCGC	1 cut(s)	672
Csp6I	GTAC	3 cut(s)	358, 547, 692
CviAII	CATG	3 cut(s)	326, 361, 505
CviQI	GTAC	3 cut(s)	358, 547, 692
DpnI	GATC	2 cut(s)	481, 522
DpnII	GATC	2 cut(s)	479, 520
DraI	TTTAAA	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	101
Eco130I	CCWWGG	2 cut(s)	504, 516
Eco32I	GATATC	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	651
EcoRV	GATATC	1 cut(s)	32
EcoT14I	CCWWGG	2 cut(s)	504, 516
ErhI	CCWWGG	2 cut(s)	504, 516
FaeI	CATG	3 cut(s)	329, 364, 508
FalI	AAGNNNNNCTT	4 cut(s)	400, 432, 516, 548
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	3 cut(s)	325, 360, 504
FauNDI	CATATG	1 cut(s)	484
Fnu4HI	GCNGC	3 cut(s)	101, 210, 646
FokI	GGATG	4 cut(s)	251, 556, 635, 709
Fsp4HI	GCNGC	3 cut(s)	101, 210, 646
FspBI	CTAG	2 cut(s)	224, 581
GlaI	GCGC	1 cut(s)	671
GluI	GCNGC	3 cut(s)	101, 210, 646
GsuI	CTGGAG	1 cut(s)	734
HaeIII	GGCC	3 cut(s)	103, 412, 563
HhaI	GCGC	1 cut(s)	672
Hin1II	CATG	3 cut(s)	329, 364, 508
Hin6I	GCGC	1 cut(s)	670
HinP1I	GCGC	1 cut(s)	670
HindIII	AAGCTT	1 cut(s)	456
HinfI	GANTC	2 cut(s)	298, 429
HphI	GGTGA	4 cut(s)	83, 136, 202, 316
Hpy166II	GTNNAC	2 cut(s)	119, 374
Hpy188I	TCNGA	1 cut(s)	494
Hpy188III	TCNNGA	3 cut(s)	326, 533, 747
Hpy8I	GTNNAC	2 cut(s)	119, 374
HpyAV	CCTTC	7 cut(s)	68, 236, 402, 580, 679, 684, 698
HpyCH4III	ACNGT	4 cut(s)	178, 232, 323, 371
HpyCH4V	TGCA	2 cut(s)	275, 648
HpyF10VI	GCNNNNNNNGC	1 cut(s)	667
Hsp92II	CATG	3 cut(s)	329, 364, 508
HspAI	GCGC	1 cut(s)	670
Kzo9I	GATC	2 cut(s)	479, 520
LmnI	GCTCC	2 cut(s)	164, 658
LpnPI	CCDG	8 cut(s)	54, 287, 332, 557, 638, 665, 686, 698
Lsp1109I	GCAGC	1 cut(s)	632
LweI	GCATC	1 cut(s)	657
MaeI	CTAG	2 cut(s)	224, 581
MaeIII	GTNAC	2 cut(s)	55, 91
MalI	GATC	2 cut(s)	481, 522
MboI	GATC	2 cut(s)	479, 520
MboII	GAAGA	1 cut(s)	694
MfeI	CAATTG	1 cut(s)	276
MluCI	AATT	7 cut(s)	61, 81, 276, 308, 382, 538, 733
MlyI	GAGTC	1 cut(s)	438
MmeI	TCCRAC	1 cut(s)	455
MnlI	CCTC	6 cut(s)	415, 452, 553, 649, 682, 738
MseI	TTAA	4 cut(s)	80, 84, 183, 270
MspA1I	CMGCKG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	653
MunI	CAATTG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	653
MwoI	GCNNNNNNNGC	1 cut(s)	667
NcoI	CCATGG	1 cut(s)	504
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	2 cut(s)	479, 520
NlaIII	CATG	3 cut(s)	329, 364, 508
NlaIV	GGNNCC	1 cut(s)	660
PacI	TTAATTAA	1 cut(s)	84
PagI	TCATGA	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	298
PflMI	CCANNNNNTGG	1 cut(s)	556
PfoI	TCCNGGA	1 cut(s)	651
PkrI	GCNGC	3 cut(s)	102, 211, 647
PleI	GAGTC	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	437
PshBI	ATTAAT	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	651
PspGI	CCWGG	1 cut(s)	651
PspN4I	GGNNCC	1 cut(s)	660
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	3 cut(s)	359, 548, 693
RsaNI	GTAC	3 cut(s)	358, 547, 692
SaqAI	TTAA	4 cut(s)	80, 84, 183, 270
SatI	GCNGC	3 cut(s)	101, 210, 646
Sau3AI	GATC	2 cut(s)	479, 520
SchI	GAGTC	1 cut(s)	438
ScrFI	CCNGG	1 cut(s)	653
SetI	ASST	7 cut(s)	70, 91, 169, 454, 460, 582, 693
SfaNI	GCATC	1 cut(s)	657
SmlI	CTYRAG	2 cut(s)	453, 533
SmoI	CTYRAG	2 cut(s)	453, 533
Sse9I	AATT	7 cut(s)	61, 81, 276, 308, 382, 538, 733
SsiI	CCGC	2 cut(s)	100, 209
SspMI	CTAG	2 cut(s)	224, 581
StyD4I	CCNGG	1 cut(s)	651
StyI	CCWWGG	2 cut(s)	504, 516
TaaI	ACNGT	4 cut(s)	178, 232, 323, 371
TasI	AATT	7 cut(s)	61, 81, 276, 308, 382, 538, 733
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	2 cut(s)	103, 212
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	4 cut(s)	80, 84, 183, 270
Tru9I	TTAA	4 cut(s)	80, 84, 183, 270
TscAI	CASTG	2 cut(s)	102, 237
TseI	GCWGC	1 cut(s)	645
TspDTI	ATGAA	3 cut(s)	255, 582, 695
TspRI	CASTG	2 cut(s)	102, 237
Van91I	CCANNNNNTGG	1 cut(s)	556
VspI	ATTAAT	1 cut(s)	270
XapI	RAATTY	2 cut(s)	61, 382
XspI	CTAG	2 cut(s)	224, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.