Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Forward (+)

50112043 .. 50114308

Gene Structure 2266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG300600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCAGAGAGATGGCAACCTGGTTCAGTATCCAATTGGTCCATTTACATTGAGTTCTAATCAATATTCTTATTGGAACACTGGGACATTCACAGCTGGGAACAATGTGTCCCTCAATCTTGATCAAAATGAGGGGCTCTATCTTCTTGATTCCACCGGTTTCAAGATAAAAAGTTTGTTTTCTCTTCAGAAAGACCTTTCTATGTATCGTAGCTATCGTCTGACGATTGATGCTGATGGAATACTCCGGTTGTACTCCCACAGTTTGGTTAAGAATGATTCCTGGTCAATTGATTGGTCACCAACTGATAGTAAGTGTGCTCCTATTGGCCTTTGTGGCCTAAATTCTTATTGTGTTCTTGTGGATCCGGAACCTTCCTGTGTATGTCTCCCTGGTTTCGTTTTCATCGACGAAGGCCAAAGATATTTAGGCTGCAAGAGGAACTTGAGTACAGTTGGTTGCAGAGGTGAGAATGAAACTTCATATTCTATTGTTGATGTGGATAACATAGATTGGGAAAACACTCCATACTCTATTCTATCATTGGATAAGACTGCTTGTAAAGAGGACTGTTTGATGGATTGTAACTGTGAAGTTGCGATATTTATGGACCAACAGTGTAGAAAACAAAAGCTCCCTCTACGATTTGGAAGAACTCACCGAAGCGATGTGGTGACAACCTTTGTCAAAAAGGGTACTACTGATGAGAGTTCAGGTACAAAAAGGGGATCAAAGGAGTTGAAGATTGGAAATGAACATGGCGGCCTCATTGCAAATTTTTCTAAGGAACATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

265

Amino Acids

29.68

Weight (kDa)

5.63

Isoelectric Point (pI)

26.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	59 - 134	1.4e-07	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccIII	TCCGGA	1 cut(s)	367
AciI	CCGC	1 cut(s)	762
AclWI	GGATC	3 cut(s)	359, 372, 736
AcsI	RAATTY	2 cut(s)	343, 775
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	4 cut(s)	254, 451, 697, 718
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	163, 742
AjnI	CCWGG	3 cut(s)	18, 281, 391
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	3 cut(s)	95, 213, 634
AluI	AGCT	3 cut(s)	95, 213, 634
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	1 cut(s)	392
AlwI	GGATC	3 cut(s)	359, 372, 736
Aor13HI	TCCGGA	1 cut(s)	367
AoxI	GGCC	4 cut(s)	328, 337, 415, 763
ApeKI	GCWGC	1 cut(s)	432
ApoI	RAATTY	2 cut(s)	343, 775
AsiGI	ACCGGT	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	38, 610
AsuHPI	GGTGA	4 cut(s)	291, 479, 650, 685
AvaII	GGWCC	2 cut(s)	38, 610
BamHI	GGATCC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	3 cut(s)	5, 230, 571
BciT130I	CCWGG	3 cut(s)	20, 283, 393
BciVI	GTATCC	1 cut(s)	39
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	392
BfuI	GTATCC	1 cut(s)	39
BglI	GCCNNNNNGGC	1 cut(s)	336
BisI	GCNGC	2 cut(s)	433, 763
BlsI	GCNGC	2 cut(s)	434, 764
Bme1390I	CCNGG	3 cut(s)	20, 283, 393
Bme18I	GGWCC	2 cut(s)	38, 610
BmgT120I	GGNCC	2 cut(s)	38, 610
BmiI	GGNNCC	2 cut(s)	366, 372
BmrFI	CCNGG	3 cut(s)	20, 283, 393
BmrI	ACTGGG	1 cut(s)	90
BmsI	GCATC	1 cut(s)	220
BmuI	ACTGGG	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	466
BsaJI	CCNNGG	1 cut(s)	391
BsaWI	WCCGGW	3 cut(s)	155, 246, 367
BsaXI	ACNNNNNCTCC	2 cut(s)	618, 648
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	85
Bse3DI	GCAATG	1 cut(s)	768
BseAI	TCCGGA	1 cut(s)	367
BseBI	CCWGG	3 cut(s)	20, 283, 393
BseDI	CCNNGG	1 cut(s)	391
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMI	GCAATG	1 cut(s)	768
BseNI	ACTGG	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	419
BseYI	CCCAGC	1 cut(s)	95
BshFI	GGCC	4 cut(s)	330, 339, 417, 765
BshTI	ACCGGT	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	3 cut(s)	156, 247, 368
BslFI	GGGAC	2 cut(s)	94, 97
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	1 cut(s)	392
BsmFI	GGGAC	2 cut(s)	94, 97
BsnI	GGCC	4 cut(s)	330, 339, 417, 765
Bsp1286I	GDGCHC	2 cut(s)	138, 322
Bsp13I	TCCGGA	1 cut(s)	367
Bsp143I	GATC	3 cut(s)	121, 364, 728
BspACI	CCGC	1 cut(s)	762
BspANI	GGCC	4 cut(s)	330, 339, 417, 765
BspEI	TCCGGA	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	366, 372
BspPI	GGATC	3 cut(s)	359, 372, 736
BsrDI	GCAATG	1 cut(s)	768
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	3 cut(s)	121, 364, 728
Bst2UI	CCWGG	3 cut(s)	20, 283, 393
Bst4CI	ACNGT	5 cut(s)	263, 454, 572, 590, 618
Bst6I	CTCTTC	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	783
BstEII	GGTNACC	1 cut(s)	297
BstKTI	GATC	3 cut(s)	124, 367, 731
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	3 cut(s)	121, 364, 728
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstNI	CCWGG	3 cut(s)	20, 283, 393
BstPI	GGTNACC	1 cut(s)	297
BstSCI	CCNGG	3 cut(s)	18, 281, 391
BstV1I	GCAGC	1 cut(s)	419
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuI	GTATCC	1 cut(s)	39
BsuRI	GGCC	4 cut(s)	330, 339, 417, 765
BtgZI	GCGATG	1 cut(s)	681
BtsIMutI	CAGTG	2 cut(s)	78, 623
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	2 cut(s)	38, 610
CsiI	ACCWGGT	1 cut(s)	18
Csp6I	GTAC	4 cut(s)	253, 450, 696, 717
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	1 cut(s)	758
CviJI	RGCY	9 cut(s)	95, 136, 213, 330, 339, 417, 432, 634, 765
CviKI_1	RGCY	9 cut(s)	95, 136, 213, 330, 339, 417, 432, 634, 765
CviQI	GTAC	4 cut(s)	253, 450, 696, 717
DdeI	CTNAG	1 cut(s)	783
DpnI	GATC	3 cut(s)	123, 366, 730
DpnII	GATC	3 cut(s)	121, 364, 728
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	138
Eco47I	GGWCC	2 cut(s)	38, 610
Eco57I	CTGAAG	1 cut(s)	170
Eco91I	GGTNACC	1 cut(s)	297
EcoO65I	GGTNACC	1 cut(s)	297
EcoRII	CCWGG	3 cut(s)	18, 281, 391
EcoT38I	GRGCYC	1 cut(s)	138
FaeI	CATG	1 cut(s)	761
FaiI	YATR	7 cut(s)	203, 385, 484, 509, 529, 608, 759
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FaqI	GGGAC	2 cut(s)	94, 97
FatI	CATG	1 cut(s)	757
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	2 cut(s)	433, 763
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	433, 763
GluI	GCNGC	2 cut(s)	433, 763
GsaI	CCCAGC	1 cut(s)	99
HaeIII	GGCC	4 cut(s)	330, 339, 417, 765
HapII	CCGG	3 cut(s)	156, 247, 368
Hin1II	CATG	1 cut(s)	761
HinfI	GANTC	2 cut(s)	149, 278
HpaII	CCGG	3 cut(s)	156, 247, 368
HphI	GGTGA	4 cut(s)	291, 479, 650, 685
Hpy188I	TCNGA	2 cut(s)	189, 222
Hpy188III	TCNNGA	4 cut(s)	119, 146, 163, 368
Hpy99I	CGWCG	1 cut(s)	413
HpyAV	CCTTC	2 cut(s)	384, 407
HpyCH4III	ACNGT	5 cut(s)	263, 454, 572, 590, 618
HpyCH4V	TGCA	4 cut(s)	4, 435, 462, 773
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
HpyF3I	CTNAG	1 cut(s)	783
Hsp92II	CATG	1 cut(s)	761
Kpn2I	TCCGGA	1 cut(s)	367
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	121, 364, 728
LmnI	GCTCC	2 cut(s)	325, 639
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	1 cut(s)	220
MabI	ACCWGGT	1 cut(s)	18
MaeIII	GTNAC	3 cut(s)	297, 584, 673
MalI	GATC	3 cut(s)	123, 366, 730
MboI	GATC	3 cut(s)	121, 364, 728
MboII	GAAGA	4 cut(s)	134, 176, 663, 754
MfeI	CAATTG	2 cut(s)	33, 288
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	2 cut(s)	138, 322
MluCI	AATT	4 cut(s)	33, 288, 343, 775
MnlI	CCTC	7 cut(s)	122, 124, 432, 458, 559, 648, 776
MroI	TCCGGA	1 cut(s)	367
MseI	TTAA	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	3 cut(s)	156, 247, 368
MspR9I	CCNGG	3 cut(s)	20, 283, 393
MunI	CAATTG	2 cut(s)	33, 288
MvaI	CCWGG	3 cut(s)	20, 283, 393
MwoI	GCNNNNNNNGC	1 cut(s)	336
NdeII	GATC	3 cut(s)	121, 364, 728
NlaIII	CATG	1 cut(s)	761
NlaIV	GGNNCC	2 cut(s)	366, 372
NmuCI	GTSAC	2 cut(s)	297, 673
PcsI	WCGNNNNNNNCGW	2 cut(s)	214, 405
PfeI	GAWTC	2 cut(s)	149, 278
PflMI	CCANNNNNTGG	1 cut(s)	265
PinAI	ACCGGT	1 cut(s)	155
PkrI	GCNGC	2 cut(s)	434, 764
Psp6I	CCWGG	3 cut(s)	18, 281, 391
PspEI	GGTNACC	1 cut(s)	297
PspFI	CCCAGC	1 cut(s)	95
PspGI	CCWGG	3 cut(s)	18, 281, 391
PspN4I	GGNNCC	2 cut(s)	366, 372
PspPI	GGNCC	2 cut(s)	38, 610
PsuI	RGATCY	1 cut(s)	364
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	4 cut(s)	254, 451, 697, 718
RsaNI	GTAC	4 cut(s)	253, 450, 696, 717
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	2 cut(s)	433, 763
Sau3AI	GATC	3 cut(s)	121, 364, 728
Sau96I	GGNCC	2 cut(s)	38, 610
ScrFI	CCNGG	3 cut(s)	20, 283, 393
SduI	GDGCHC	2 cut(s)	138, 322
SetI	ASST	9 cut(s)	21, 97, 198, 215, 376, 469, 636, 683, 718
SexAI	ACCWGGT	1 cut(s)	18
SfaNI	GCATC	1 cut(s)	220
SfiI	GGCCNNNNNGGCC	1 cut(s)	336
SinI	GGWCC	2 cut(s)	38, 610
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
Sse9I	AATT	4 cut(s)	33, 288, 343, 775
SsiI	CCGC	1 cut(s)	762
SspI	AATATT	1 cut(s)	65
StyD4I	CCNGG	3 cut(s)	18, 281, 391
TaaI	ACNGT	5 cut(s)	263, 454, 572, 590, 618
TaqI	TCGA	1 cut(s)	408
TasI	AATT	4 cut(s)	33, 288, 343, 775
TatI	WGTACW	2 cut(s)	252, 449
TauI	GCSGC	1 cut(s)	765
TfiI	GAWTC	2 cut(s)	149, 278
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	2 cut(s)	85, 623
TseFI	GTSAC	2 cut(s)	297, 673
TseI	GCWGC	1 cut(s)	432
Tsp45I	GTSAC	2 cut(s)	297, 673
TspDTI	ATGAA	4 cut(s)	394, 471, 489, 768
TspRI	CASTG	2 cut(s)	85, 623
Van91I	CCANNNNNTGG	1 cut(s)	265
VpaK11BI	GGWCC	2 cut(s)	38, 610
XapI	RAATTY	2 cut(s)	343, 775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.