Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Reverse (-)

13486071 .. 13489975

Gene Structure 3905 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0101500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGAGAAGTTGATCCAGCCTTTGTCCAAGCCATTGATCAAAGGCCAAAGCTCAAACCCACCATCCCAGTTGATGATGAGATCCCCGTAATAGACCTCTCAGTTTTAAGCATCAGTCATGGTGATACCAAAGAACTAGTCTCAGAAATAGGCCATGCTTGCCAAAAGTGGGGATTTTTCCAGGTTGTAAACCATGGGGTGCCGTTGGAATTGTTTCAGAGAATGGAGGAGGTTGGTAAGAGATTCTTTGAGTTACCACTTGAAGAAAAGAAGAAGGTGAAGAGAGACATGGTGAATGCATTGGGGTACCATGATGGTGAGCACACCAAGAATGTTAGGGATTGGAAGGAAGTGTTTGATTTCTTGGTGGAAGATATGACTATGGTCCCAGCATCACATGAGCTTGATGATAAGGAGTTGAGGATATTGACTAATCAGTGGCCTCAATACCCTCCTGAGTTCAGAGAGGTTTGCCAGGAGTATGCTAGAGCAGTGGAGAAGCTAGCTTATAAGTTGTTAGGACTAATTGCTTTGAGTTTAGATCAGCCAGAAAACAAGTTCAATGACTTCTTTAAAGATCACCAAACGAGCTTGATCAGATTCAATCACTATCCTCCATGCCCTGTTCCTCACTTAGCTCTAGGTGTTGGCCGGCACAAGGATGCCGGTGCCTTAACTGTCCTTGCCCAAGATGATGTTGGAGGACTGCAAGTTAGACGGAAATCAGATGGAGAATGGATTCCGGTTACACCCACCCCAAATGCCTATATCATCAATGTTGGTGACATGGTTCAGGTTTGGAGCAATGACAAATACGAGAGTGTGGAGCACAGAGTAGTGGTGAATTCAGAGAAAGAAAGGTTTTCGATTCCATTCTTCTTCTTCCCAGCTCACAATGTGATGGTGAAGCCCTTGGAGGAGCTATTAAATGATGAGAACCCGGCCAAATACAGGGAATACAACTGGGGAAAGTTTTTCGCTACCAGAAACCGCAGTGATTTCAAGAAACTTGATGCGGAGAATATCCAAATTCATCATTTCAGGTTACCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

351

Amino Acids

40.7

Weight (kDa)

5.64

Isoelectric Point (pI)

31.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	28 - 149	1.2e-32	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	197 - 296	2.2e-34	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	510
Acc65I	GGTACC	1 cut(s)	306
AccB1I	GGYRCC	3 cut(s)	199, 306, 668
AciI	CCGC	2 cut(s)	991, 1016
AclWI	GGATC	2 cut(s)	8, 76
AcoI	YGGCCR	2 cut(s)	649, 942
AcsI	RAATTY	2 cut(s)	844, 1029
AdeI	CACNNNGTG	1 cut(s)	898
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	3 cut(s)	169, 658, 951
AgsI	TTSAA	4 cut(s)	263, 562, 604, 1003
AhlI	ACTAGT	1 cut(s)	136
AjnI	CCWGG	2 cut(s)	180, 474
AluBI	AGCT	8 cut(s)	52, 403, 502, 506, 591, 638, 890, 922
AluI	AGCT	8 cut(s)	52, 403, 502, 506, 591, 638, 890, 922
Alw21I	GWGCWC	2 cut(s)	324, 831
Alw26I	GTCTC	2 cut(s)	145, 279
AlwI	GGATC	2 cut(s)	8, 76
AoxI	GGCC	5 cut(s)	44, 151, 440, 649, 942
ApoI	RAATTY	2 cut(s)	844, 1029
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
Asp700I	GAANNNNTTC	2 cut(s)	213, 738
Asp718I	GGTACC	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	385
AsuC2I	CCSGG	1 cut(s)	941
AsuHPI	GGTGA	8 cut(s)	134, 289, 304, 329, 572, 794, 853, 916
AsuNHI	GCTAGC	1 cut(s)	502
AvaII	GGWCC	1 cut(s)	385
BanI	GGYRCC	3 cut(s)	199, 306, 668
Bbv12I	GWGCWC	2 cut(s)	324, 831
BccI	CCATC	4 cut(s)	71, 308, 722, 895
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	2 cut(s)	182, 476
BclI	TGATCA	2 cut(s)	37, 594
BcnI	CCSGG	1 cut(s)	941
BcoDI	GTCTC	2 cut(s)	145, 279
BcuI	ACTAGT	1 cut(s)	136
BfaI	CTAG	4 cut(s)	137, 486, 503, 641
Bme1390I	CCNGG	3 cut(s)	182, 476, 941
Bme18I	GGWCC	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	385
BmiI	GGNNCC	4 cut(s)	201, 308, 387, 670
BmrFI	CCNGG	3 cut(s)	182, 476, 941
BmrI	ACTGGG	2 cut(s)	62, 973
BmsI	GCATC	4 cut(s)	120, 401, 652, 1003
BmtI	GCTAGC	1 cut(s)	506
BmuI	ACTGGG	2 cut(s)	62, 973
BoxI	GACNNNNGTC	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	941
BsaJI	CCNNGG	2 cut(s)	193, 912
BsaWI	WCCGGW	1 cut(s)	742
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 658, 951
Bse118I	RCCGGY	2 cut(s)	651, 665
Bse1I	ACTGG	2 cut(s)	68, 968
Bse3DI	GCAATG	1 cut(s)	811
BseBI	CCWGG	2 cut(s)	182, 476
BseDI	CCNNGG	2 cut(s)	193, 912
BseGI	GGATG	2 cut(s)	63, 667
BseLI	CCNNNNNNNGG	3 cut(s)	169, 658, 951
BseMI	GCAATG	1 cut(s)	811
BseMII	CTCAG	3 cut(s)	114, 156, 447
BseNI	ACTGG	2 cut(s)	68, 968
BseRI	GAGGAG	2 cut(s)	242, 932
BseYI	CCCAGC	2 cut(s)	388, 886
BshFI	GGCC	5 cut(s)	46, 153, 442, 651, 944
BshNI	GGYRCC	3 cut(s)	199, 306, 668
BsiHKAI	GWGCWC	2 cut(s)	324, 831
BsiSI	CCGG	4 cut(s)	652, 666, 743, 941
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	3 cut(s)	169, 658, 951
BsmAI	GTCTC	2 cut(s)	145, 279
BsmFI	GGGAC	1 cut(s)	371
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	5 cut(s)	46, 153, 442, 651, 944
Bsp1286I	GDGCHC	2 cut(s)	324, 831
Bsp143I	GATC	6 cut(s)	13, 37, 81, 541, 577, 594
Bsp19I	CCATGG	1 cut(s)	193
BspACI	CCGC	2 cut(s)	991, 1016
BspANI	GGCC	5 cut(s)	46, 153, 442, 651, 944
BspCNI	CTCAG	3 cut(s)	113, 155, 448
BspLI	GGNNCC	4 cut(s)	201, 308, 387, 670
BspOI	GCTAGC	1 cut(s)	506
BspPI	GGATC	2 cut(s)	8, 76
BspT107I	GGYRCC	3 cut(s)	199, 306, 668
BsrDI	GCAATG	1 cut(s)	811
BsrFI	RCCGGY	2 cut(s)	651, 665
BsrI	ACTGG	2 cut(s)	68, 968
BssAI	RCCGGY	2 cut(s)	651, 665
BssECI	CCNNGG	2 cut(s)	193, 912
BssMI	GATC	6 cut(s)	13, 37, 81, 541, 577, 594
BssT1I	CCWWGG	2 cut(s)	193, 912
Bst2UI	CCWGG	2 cut(s)	182, 476
Bst4CI	ACNGT	2 cut(s)	679, 1053
Bst6I	CTCTTC	1 cut(s)	275
BstC8I	GCNNGC	3 cut(s)	160, 504, 653
BstDEI	CTNAG	4 cut(s)	100, 142, 456, 634
BstDSI	CCRYGG	1 cut(s)	193
BstEII	GGTNACC	1 cut(s)	1044
BstF5I	GGATG	2 cut(s)	63, 667
BstKTI	GATC	6 cut(s)	16, 40, 84, 544, 580, 597
BstMAI	GTCTC	2 cut(s)	145, 279
BstMBI	GATC	6 cut(s)	13, 37, 81, 541, 577, 594
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNI	CCWGG	2 cut(s)	182, 476
BstPAI	GACNNNNGTC	1 cut(s)	383
BstPI	GGTNACC	1 cut(s)	1044
BstSCI	CCNGG	3 cut(s)	180, 474, 939
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	5 cut(s)	46, 153, 442, 651, 944
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	63, 667
BtsI	GCAGTG	2 cut(s)	498, 1000
BtsIMutI	CAGTG	3 cut(s)	443, 498, 1000
Cac8I	GCNNGC	3 cut(s)	160, 504, 653
Cfr10I	RCCGGY	2 cut(s)	651, 665
Cfr13I	GGNCC	1 cut(s)	385
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	8 cut(s)	119, 155, 194, 289, 311, 398, 618, 787
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	4 cut(s)	100, 142, 456, 634
DpnI	GATC	6 cut(s)	15, 39, 83, 543, 579, 596
DpnII	GATC	6 cut(s)	13, 37, 81, 541, 577, 594
DraI	TTTAAA	1 cut(s)	574
DraIII	CACNNNGTG	1 cut(s)	898
EaeI	YGGCCR	2 cut(s)	649, 942
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Eco130I	CCWWGG	2 cut(s)	193, 912
Eco47I	GGWCC	1 cut(s)	385
Eco91I	GGTNACC	1 cut(s)	1044
EcoO65I	GGTNACC	1 cut(s)	1044
EcoRI	GAATTC	1 cut(s)	844
EcoRII	CCWGG	2 cut(s)	180, 474
EcoT14I	CCWWGG	2 cut(s)	193, 912
EcoT22I	ATGCAT	1 cut(s)	301
ErhI	CCWWGG	2 cut(s)	193, 912
FaeI	CATG	8 cut(s)	122, 158, 197, 292, 314, 401, 621, 790
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	8 cut(s)	118, 154, 193, 288, 310, 397, 617, 786
FbaI	TGATCA	2 cut(s)	37, 594
FokI	GGATG	2 cut(s)	50, 674
FspBI	CTAG	4 cut(s)	137, 486, 503, 641
GsaI	CCCAGC	2 cut(s)	392, 890
HaeIII	GGCC	5 cut(s)	46, 153, 442, 651, 944
HapII	CCGG	4 cut(s)	652, 666, 743, 941
Hin1II	CATG	8 cut(s)	122, 158, 197, 292, 314, 401, 621, 790
HinfI	GANTC	4 cut(s)	243, 600, 739, 868
HpaII	CCGG	4 cut(s)	652, 666, 743, 941
HphI	GGTGA	8 cut(s)	134, 289, 304, 329, 572, 794, 853, 916
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	6 cut(s)	145, 219, 464, 599, 727, 850
Hpy188III	TCNNGA	2 cut(s)	455, 1003
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	2 cut(s)	268, 340
HpyCH4III	ACNGT	2 cut(s)	679, 1053
HpyCH4V	TGCA	2 cut(s)	299, 709
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	4 cut(s)	100, 142, 456, 634
Hsp92II	CATG	8 cut(s)	122, 158, 197, 292, 314, 401, 621, 790
KpnI	GGTACC	1 cut(s)	310
KroI	GCCGGC	1 cut(s)	651
KroNI	GCCGGC	1 cut(s)	653
Ksp22I	TGATCA	2 cut(s)	37, 594
Kzo9I	GATC	6 cut(s)	13, 37, 81, 541, 577, 594
LmnI	GCTCC	3 cut(s)	801, 826, 919
LweI	GCATC	4 cut(s)	120, 401, 652, 1003
MaeI	CTAG	4 cut(s)	137, 486, 503, 641
MaeIII	GTNAC	4 cut(s)	252, 745, 782, 1044
MalI	GATC	6 cut(s)	15, 39, 83, 543, 579, 596
MboI	GATC	6 cut(s)	13, 37, 81, 541, 577, 594
MboII	GAAGA	7 cut(s)	275, 283, 292, 383, 868, 871, 874
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	2 cut(s)	324, 831
MluCI	AATT	4 cut(s)	209, 525, 844, 1029
MmeI	TCCRAC	2 cut(s)	186, 679
Mph1103I	ATGCAT	1 cut(s)	301
MroNI	GCCGGC	1 cut(s)	651
MroXI	GAANNNNTTC	2 cut(s)	213, 738
MseI	TTAA	4 cut(s)	107, 573, 674, 926
MslI	CAYNNNNRTG	2 cut(s)	315, 660
MspI	CCGG	4 cut(s)	652, 666, 743, 941
MspR9I	CCNGG	3 cut(s)	182, 476, 941
Mva1269I	GAATGC	1 cut(s)	301
MvaI	CCWGG	2 cut(s)	182, 476
MwoI	GCNNNNNNNGC	1 cut(s)	159
NaeI	GCCGGC	1 cut(s)	653
NciI	CCSGG	1 cut(s)	941
NcoI	CCATGG	1 cut(s)	193
NdeII	GATC	6 cut(s)	13, 37, 81, 541, 577, 594
NgoMIV	GCCGGC	1 cut(s)	651
NheI	GCTAGC	1 cut(s)	502
NlaIII	CATG	8 cut(s)	122, 158, 197, 292, 314, 401, 621, 790
NlaIV	GGNNCC	4 cut(s)	201, 308, 387, 670
NmuCI	GTSAC	1 cut(s)	782
NsiI	ATGCAT	1 cut(s)	301
PctI	GAATGC	1 cut(s)	301
PdiI	GCCGGC	1 cut(s)	653
PdmI	GAANNNNTTC	2 cut(s)	213, 738
PfeI	GAWTC	4 cut(s)	243, 600, 739, 868
PshAI	GACNNNNGTC	1 cut(s)	383
PsiI	TTATAA	1 cut(s)	510
Psp6I	CCWGG	2 cut(s)	180, 474
PspEI	GGTNACC	1 cut(s)	1044
PspFI	CCCAGC	2 cut(s)	388, 886
PspGI	CCWGG	2 cut(s)	180, 474
PspN4I	GGNNCC	4 cut(s)	201, 308, 387, 670
PspPI	GGNCC	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	81
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
RseI	CAYNNNNRTG	2 cut(s)	315, 660
SaqAI	TTAA	4 cut(s)	107, 573, 674, 926
Sau3AI	GATC	6 cut(s)	13, 37, 81, 541, 577, 594
Sau96I	GGNCC	1 cut(s)	385
ScrFI	CCNGG	3 cut(s)	182, 476, 941
SduI	GDGCHC	2 cut(s)	324, 831
SfaNI	GCATC	4 cut(s)	120, 401, 652, 1003
SinI	GGWCC	1 cut(s)	385
SmiMI	CAYNNNNRTG	2 cut(s)	315, 660
SpeI	ACTAGT	1 cut(s)	136
Sse9I	AATT	4 cut(s)	209, 525, 844, 1029
SsiI	CCGC	2 cut(s)	991, 1016
SspMI	CTAG	4 cut(s)	137, 486, 503, 641
StyD4I	CCNGG	3 cut(s)	180, 474, 939
StyI	CCWWGG	2 cut(s)	193, 912
TaaI	ACNGT	2 cut(s)	679, 1053
TaqI	TCGA	1 cut(s)	866
TasI	AATT	4 cut(s)	209, 525, 844, 1029
TfiI	GAWTC	4 cut(s)	243, 600, 739, 868
Tru1I	TTAA	4 cut(s)	107, 573, 674, 926
Tru9I	TTAA	4 cut(s)	107, 573, 674, 926
TscAI	CASTG	3 cut(s)	443, 498, 1000
TseFI	GTSAC	1 cut(s)	782
Tsp45I	GTSAC	1 cut(s)	782
TspDTI	ATGAA	1 cut(s)	1022
TspGWI	ACGGA	1 cut(s)	733
TspRI	CASTG	3 cut(s)	443, 498, 1000
VpaK11BI	GGWCC	1 cut(s)	385
XapI	RAATTY	2 cut(s)	844, 1029
XcmI	CCANNNNNNNNNTGG	1 cut(s)	695
XmnI	GAANNNNTTC	2 cut(s)	213, 738
XspI	CTAG	4 cut(s)	137, 486, 503, 641
Zsp2I	ATGCAT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.