Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Reverse (-)

40928767 .. 40929763

Gene Structure 997 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG217200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCAGAGAGATGGCAACCTGGTTCAGTATCCAAATATTGGTCCATTTACATTGAGTCCTAGTAAATATTCGTATTGGAACACTAGGACATTCGGAGCTGGGAACAATGTGTCCCTCAATCTTGATCAAAGTGGAGGGCTCTATCTTCTTAATTCCACCGGTTTCAAGATAAAAAGTTTTCCTCTTCAGAATAGCCTTTCTATGAATCGTGGCTATCGTCTCACGATTGATGCTGATGGAATACTCCGGTTGTACTCCTACAGTTTGGTTCGGAATGATTCCTGGTCAATTGAGTGGTCACCAGCAGTTGATAAGTGTGCTCCTCTTGGCCTCTGTGGCCTAAATTCTTATTGTGTTCTTGGGGAACCGGAACCTTCTTGTGTATGTCTCCCTGGTTTCGTTTTCATCGACGAGGGCAAAAGATATTTAGGCTGCAAGAGAAACTTGAGTACAGTTGGTTGCAGAGGTGAGAATGAAACTTCATATTCTATTGTTAATGTGGATAACATAGATTGGGAAAACACTCCATACTCTAATCTATCATTGGATAAGACTGCTTGTAAAGAGGACTGTTTGATGGATTGCGACTGTGAAGCTGCGATATTTAGGGGCCTGCAGTGCGGAAAACAAAAGCTCCCTCTAAGATTTGGAAGAACTCGCAAACCTGGTGTGGTGACAACCTTTGTCAAAAAGGGTACTACTGATGAGAGTTTCGATACAAAAAGGGGGAGCAAGGGGAGAAAAAATGTTGACAGACTGGTGAAGGATTGGTTGAAGGTGTTACACTGCAGTCATATACATATTGTGAACTTGAAAAGGCAACCAAAGGCTTCACCAATCAAGTGGGAAAAGGAGCTTTTGGGACAGTTTTTAAAGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

293

Amino Acids

32.88

Weight (kDa)

9.03

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	69 - 134	2.8e-07	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	38
AciI	CCGC	1 cut(s)	621
AcsI	RAATTY	1 cut(s)	343
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	3 cut(s)	254, 451, 697
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgeI	ACCGGT	1 cut(s)	158
AgsI	TTSAA	3 cut(s)	166, 775, 814
AjnI	CCWGG	4 cut(s)	18, 281, 391, 664
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	4 cut(s)	98, 596, 634, 856
AluI	AGCT	4 cut(s)	98, 596, 634, 856
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	2 cut(s)	224, 392
AoxI	GGCC	3 cut(s)	328, 337, 610
ApeKI	GCWGC	2 cut(s)	432, 596
ApoI	RAATTY	1 cut(s)	343
AsiGI	ACCGGT	1 cut(s)	158
AspS9I	GGNCC	2 cut(s)	41, 610
AsuHPI	GGTGA	5 cut(s)	291, 479, 685, 772, 825
AvaII	GGWCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	2 cut(s)	419, 583
BccI	CCATC	3 cut(s)	5, 230, 571
BciT130I	CCWGG	4 cut(s)	20, 283, 393, 666
BciVI	GTATCC	1 cut(s)	39
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	224, 392
BfaI	CTAG	2 cut(s)	60, 84
BfmI	CTRYAG	3 cut(s)	259, 614, 787
BfuI	GTATCC	1 cut(s)	39
BglI	GCCNNNNNGGC	1 cut(s)	336
BisI	GCNGC	2 cut(s)	433, 597
BlsI	GCNGC	2 cut(s)	434, 598
Bme1390I	CCNGG	4 cut(s)	20, 283, 393, 666
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	41, 610
BmiI	GGNNCC	3 cut(s)	366, 372, 611
BmrFI	CCNGG	4 cut(s)	20, 283, 393, 666
BmsI	GCATC	1 cut(s)	220
BpuEI	CTTGAG	1 cut(s)	466
BsaJI	CCNNGG	1 cut(s)	391
BsaWI	WCCGGW	3 cut(s)	158, 246, 367
BsaXI	ACNNNNNCTCC	2 cut(s)	618, 648
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	762
BseBI	CCWGG	4 cut(s)	20, 283, 393, 666
BseDI	CCNNGG	1 cut(s)	391
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	762
BseRI	GAGGAG	1 cut(s)	312
BseXI	GCAGC	2 cut(s)	419, 583
BseYI	CCCAGC	1 cut(s)	98
BshFI	GGCC	3 cut(s)	330, 339, 612
BshTI	ACCGGT	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	3 cut(s)	159, 247, 368
BslFI	GGGAC	2 cut(s)	97, 876
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	2 cut(s)	224, 392
BsmBI	CGTCTC	1 cut(s)	224
BsmFI	GGGAC	2 cut(s)	97, 876
BsnI	GGCC	3 cut(s)	330, 339, 612
Bsp1286I	GDGCHC	2 cut(s)	141, 322
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	1 cut(s)	621
BspANI	GGCC	3 cut(s)	330, 339, 612
BspLI	GGNNCC	3 cut(s)	366, 372, 611
BspMAI	CTGCAG	2 cut(s)	618, 791
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	762
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	1 cut(s)	124
Bst2UI	CCWGG	4 cut(s)	20, 283, 393, 666
Bst4CI	ACNGT	5 cut(s)	263, 454, 572, 590, 867
Bst6I	CTCTTC	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	614
BstDEI	CTNAG	1 cut(s)	641
BstEII	GGTNACC	1 cut(s)	297
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	2 cut(s)	224, 392
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	2 cut(s)	336, 618
BstNI	CCWGG	4 cut(s)	20, 283, 393, 666
BstPI	GGTNACC	1 cut(s)	297
BstSCI	CCNGG	4 cut(s)	18, 281, 391, 664
BstSFI	CTRYAG	3 cut(s)	259, 614, 787
BstV1I	GCAGC	2 cut(s)	419, 583
BstXI	CCANNNNNNTGG	1 cut(s)	843
BsuI	GTATCC	1 cut(s)	39
BsuRI	GGCC	3 cut(s)	330, 339, 612
BtsI	GCAGTG	2 cut(s)	623, 784
BtsIMutI	CAGTG	2 cut(s)	623, 784
Cac8I	GCNNGC	1 cut(s)	614
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	41, 610
CsiI	ACCWGGT	2 cut(s)	18, 664
Csp6I	GTAC	3 cut(s)	253, 450, 696
CspAI	ACCGGT	1 cut(s)	158
CviQI	GTAC	3 cut(s)	253, 450, 696
DdeI	CTNAG	1 cut(s)	641
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
DraI	TTTAAA	1 cut(s)	873
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	170
Eco91I	GGTNACC	1 cut(s)	297
EcoO109I	RGGNCCY	1 cut(s)	610
EcoO65I	GGTNACC	1 cut(s)	297
EcoRII	CCWGG	4 cut(s)	18, 281, 391, 664
EcoT38I	GRGCYC	1 cut(s)	141
Esp3I	CGTCTC	1 cut(s)	224
FaiI	YATR	8 cut(s)	203, 385, 484, 509, 529, 795, 797, 801
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FaqI	GGGAC	2 cut(s)	97, 876
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	2 cut(s)	433, 597
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	2 cut(s)	433, 597
FspBI	CTAG	2 cut(s)	60, 84
GluI	GCNGC	2 cut(s)	433, 597
GsaI	CCCAGC	1 cut(s)	102
HaeIII	GGCC	3 cut(s)	330, 339, 612
HapII	CCGG	3 cut(s)	159, 247, 368
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HinfI	GANTC	3 cut(s)	55, 205, 278
HpaII	CCGG	3 cut(s)	159, 247, 368
HphI	GGTGA	5 cut(s)	291, 479, 685, 772, 825
Hpy166II	GTNNAC	2 cut(s)	751, 808
Hpy188I	TCNGA	3 cut(s)	95, 189, 273
Hpy188III	TCNNGA	3 cut(s)	122, 166, 223
Hpy8I	GTNNAC	2 cut(s)	751, 808
Hpy99I	CGWCG	1 cut(s)	413
HpyAV	CCTTC	3 cut(s)	384, 757, 769
HpyCH4III	ACNGT	5 cut(s)	263, 454, 572, 590, 867
HpyCH4V	TGCA	5 cut(s)	4, 435, 462, 616, 789
HpyF10VI	GCNNNNNNNGC	2 cut(s)	336, 618
HpyF3I	CTNAG	1 cut(s)	641
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	5 cut(s)	95, 325, 639, 729, 853
Lsp1109I	GCAGC	2 cut(s)	419, 583
LweI	GCATC	1 cut(s)	220
MabI	ACCWGGT	2 cut(s)	18, 664
MaeI	CTAG	2 cut(s)	60, 84
MaeIII	GTNAC	3 cut(s)	297, 673, 780
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	3 cut(s)	137, 176, 663
MfeI	CAATTG	1 cut(s)	288
MhlI	GDGCHC	2 cut(s)	141, 322
MluCI	AATT	3 cut(s)	151, 288, 343
MlyI	GAGTC	1 cut(s)	64
MnlI	CCTC	9 cut(s)	125, 128, 192, 333, 341, 406, 458, 559, 648
MseI	TTAA	3 cut(s)	150, 495, 872
MspI	CCGG	3 cut(s)	159, 247, 368
MspR9I	CCNGG	4 cut(s)	20, 283, 393, 666
MunI	CAATTG	1 cut(s)	288
MvaI	CCWGG	4 cut(s)	20, 283, 393, 666
MwoI	GCNNNNNNNGC	2 cut(s)	336, 618
NdeII	GATC	1 cut(s)	124
NlaIV	GGNNCC	3 cut(s)	366, 372, 611
NmuCI	GTSAC	2 cut(s)	297, 673
PcsI	WCGNNNNNNNCGW	2 cut(s)	214, 405
PfeI	GAWTC	2 cut(s)	205, 278
PflMI	CCANNNNNTGG	1 cut(s)	38
PinAI	ACCGGT	1 cut(s)	158
PkrI	GCNGC	2 cut(s)	434, 598
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
Psp6I	CCWGG	4 cut(s)	18, 281, 391, 664
PspEI	GGTNACC	1 cut(s)	297
PspFI	CCCAGC	1 cut(s)	98
PspGI	CCWGG	4 cut(s)	18, 281, 391, 664
PspN4I	GGNNCC	3 cut(s)	366, 372, 611
PspPI	GGNCC	2 cut(s)	41, 610
PstI	CTGCAG	2 cut(s)	618, 791
RsaI	GTAC	3 cut(s)	254, 451, 697
RsaNI	GTAC	3 cut(s)	253, 450, 696
SaqAI	TTAA	3 cut(s)	150, 495, 872
SatI	GCNGC	2 cut(s)	433, 597
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	2 cut(s)	41, 610
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	4 cut(s)	20, 283, 393, 666
SduI	GDGCHC	2 cut(s)	141, 322
SexAI	ACCWGGT	2 cut(s)	18, 664
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	3 cut(s)	259, 614, 787
SfiI	GGCCNNNNNGGCC	1 cut(s)	336
SinI	GGWCC	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
Sse9I	AATT	3 cut(s)	151, 288, 343
SsiI	CCGC	1 cut(s)	621
SspI	AATATT	2 cut(s)	37, 68
SspMI	CTAG	2 cut(s)	60, 84
StyD4I	CCNGG	4 cut(s)	18, 281, 391, 664
TaaI	ACNGT	5 cut(s)	263, 454, 572, 590, 867
TaqI	TCGA	2 cut(s)	408, 714
TasI	AATT	3 cut(s)	151, 288, 343
TatI	WGTACW	2 cut(s)	252, 449
TfiI	GAWTC	2 cut(s)	205, 278
Tru1I	TTAA	3 cut(s)	150, 495, 872
Tru9I	TTAA	3 cut(s)	150, 495, 872
TscAI	CASTG	2 cut(s)	623, 791
TseFI	GTSAC	2 cut(s)	297, 673
TseI	GCWGC	2 cut(s)	432, 596
Tsp45I	GTSAC	2 cut(s)	297, 673
TspDTI	ATGAA	4 cut(s)	218, 394, 471, 489
TspRI	CASTG	2 cut(s)	623, 791
Van91I	CCANNNNNTGG	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	41
XapI	RAATTY	1 cut(s)	343
XspI	CTAG	2 cut(s)	60, 84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.