Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Reverse (-)

37215572 .. 37218432

Gene Structure 2861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG209100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGCTGCAATTTTTCTTCTTCTTCAAGTTGCAACTGCTCAGCAAGGGAATATCAGCCTAGGTGCTTCTCTATATCCCCAAAACAACTCATATTGGTTATCGAATTCTGGTCAGTTTGCTTTTGGCTTCTACAGGCAAGGAAACGACCTTGCTGTAGGCATCTGGTTCGAGAAAACCAATCCGAAAACAATCATCTGGACAGCAAATCGTGATGCTGTTAAACAAGAGCCACTTCCTAATGATGTTAAATTGACTGTGAGTGACAAAGGAGTTAAGCTCATTTCAACAAACAAGAATGCCTTCCTTTCAAATTCTTTCCAGCCTGCTGTCAGGGCCTCCATGCTTGATTCAGGTAACTTTGTCCTCTACAATTCTGATTCAAACATCATTTGGCAGACTTTTGATGTTCCTACAGATACCATTGTATCCGGGCAGTGTCTGTTGGCTGGAAAAAAGCTCATCTCCTCCATCTCGAACACGAATCACTCAAGTGGAAGGTTTCAAGTGATCATGCAGAGAGATGGCAACCTGGTTCAGTATCCAAATATTGGTCCATTTACATTGAGTCCTAGAAAATATTCGTATTGGAGCACTAGGACATTCAGAGCTGGGAACAATGTGTCCCTCAATCTTGATCAAAATGGAGGGCTCTATCTTCTTAATTCCACCGGCTTCAAGATAAAAAGTTTTCCTCTTAAGAATAGCCTTTCTATGAATCGTGGCTATCGTCTCCCGATTGATGCTGATGGAATACTCCGGTTGTACTCCAACAGTTTGGTTCTGAATGATTCCTGGTCAATTGAGTGGTCACCAGCAGTTGGTAAGTGTGCTCCTCTTGGCCTCTGTGGCCTAAATTCTTATTGTGTTCTTGTGGAACAGGAACCTTCTTGTGTATGTCTCCCTGGTTTCGTTTTCATCAACGAGGGCAAAAGATATTTAGGCTGCAAGAGAAACTTGAGTACAGTTGTTTGCAAAGGTGAGAATGAAACTTCATATTCTATTGTTGATGTGGATAACATAGATTGGGAAAACACTCCGTACTCTAATTTATCATTGGATAAGACTGCTTGTAAAGAGGACTGTTTGAGGGATTGCGACTGTGAAGCTGCGATATTTAGGGACCAGCAGTGCGGAAAACAAAAGCTCCCTCTAAGATTTGGAAGAACTCGCAAACCTGGTGTGGTGACAACCTTTGTCAAAAAGGATACTACTGATGAGAGTTTTGATACAAAAAGGAGGAGCAAGGGGAGAAAAAATGTTGACAGAAAGGATGATAGAGGTTTATTAACAGATCTTAAATTTGGGAGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

437

Amino Acids

48.77

Weight (kDa)

9.1

Isoelectric Point (pI)

29.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	63 - 148	7.5e-12	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	548, 818
AciI	CCGC	1 cut(s)	1131
AcsI	RAATTY	4 cut(s)	103, 310, 853, 1298
AfaI	GTAC	3 cut(s)	764, 961, 1040
AfiI	CCNNNNNNNGG	2 cut(s)	548, 818
AflII	CTTAAG	1 cut(s)	695
AgsI	TTSAA	6 cut(s)	26, 285, 309, 381, 503, 676
AjnI	CCWGG	4 cut(s)	528, 791, 901, 1174
AleI	CACNNNNGTG	1 cut(s)	489
AloI	GAACNNNNNNTCC	2 cut(s)	605, 637
AluBI	AGCT	5 cut(s)	277, 457, 608, 1106, 1144
AluI	AGCT	5 cut(s)	277, 457, 608, 1106, 1144
Alw21I	GWGCWC	2 cut(s)	593, 832
Alw26I	GTCTC	2 cut(s)	734, 902
AlwNI	CAGNNNCTG	1 cut(s)	439
AoxI	GGCC	3 cut(s)	333, 838, 847
ApeKI	GCWGC	3 cut(s)	5, 942, 1106
ApoI	RAATTY	4 cut(s)	103, 310, 853, 1298
Asp700I	GAANNNNTTC	2 cut(s)	299, 577
AspA2I	CCTAGG	1 cut(s)	58
AspS9I	GGNCC	3 cut(s)	333, 551, 1120
AsuC2I	CCSGG	1 cut(s)	430
AsuHPI	GGTGA	3 cut(s)	801, 989, 1195
AvaII	GGWCC	2 cut(s)	551, 1120
AvrII	CCTAGG	1 cut(s)	58
BaeI	ACNNNNGTAYC	4 cut(s)	408, 408, 441, 441
BanII	GRGCYC	1 cut(s)	651
Bbv12I	GWGCWC	2 cut(s)	593, 832
BbvI	GCAGC	2 cut(s)	929, 1093
BccI	CCATC	3 cut(s)	476, 515, 740
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BciT130I	CCWGG	4 cut(s)	530, 793, 903, 1176
BciVI	GTATCC	3 cut(s)	436, 549, 1198
BclI	TGATCA	2 cut(s)	507, 634
BcnI	CCSGG	1 cut(s)	430
BcoDI	GTCTC	2 cut(s)	734, 902
BfaI	CTAG	3 cut(s)	59, 570, 594
BfmI	CTRYAG	3 cut(s)	130, 153, 411
BfrI	CTTAAG	1 cut(s)	695
BfuI	GTATCC	3 cut(s)	436, 549, 1198
BglI	GCCNNNNNGGC	1 cut(s)	846
BglII	AGATCT	1 cut(s)	1291
BisI	GCNGC	3 cut(s)	6, 943, 1107
BlnI	CCTAGG	1 cut(s)	58
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	3 cut(s)	7, 944, 1108
Bme1390I	CCNGG	5 cut(s)	430, 530, 793, 903, 1176
Bme18I	GGWCC	2 cut(s)	551, 1120
BmgT120I	GGNCC	3 cut(s)	333, 551, 1120
BmiI	GGNNCC	2 cut(s)	882, 1121
BmrFI	CCNGG	5 cut(s)	430, 530, 793, 903, 1176
BmsI	GCATC	3 cut(s)	168, 202, 730
BplI	GAGNNNNNCTC	2 cut(s)	261, 293
Bpu1102I	GCTNAGC	1 cut(s)	39
BpuEI	CTTGAG	2 cut(s)	472, 976
BpuMI	CCSGG	1 cut(s)	430
BsaJI	CCNNGG	2 cut(s)	58, 901
BsaWI	WCCGGW	1 cut(s)	756
BsaXI	ACNNNNNCTCC	2 cut(s)	1128, 1158
Bsc4I	CCNNNNNNNGG	2 cut(s)	548, 818
Bse118I	RCCGGY	1 cut(s)	668
BseBI	CCWGG	4 cut(s)	530, 793, 903, 1176
BseDI	CCNNGG	2 cut(s)	58, 901
BseGI	GGATG	1 cut(s)	1276
BseLI	CCNNNNNNNGG	2 cut(s)	548, 818
BseMII	CTCAG	1 cut(s)	53
BseRI	GAGGAG	3 cut(s)	454, 822, 1252
BseXI	GCAGC	2 cut(s)	929, 1093
BseYI	CCCAGC	1 cut(s)	608
BshFI	GGCC	3 cut(s)	335, 840, 849
BsiHKAI	GWGCWC	2 cut(s)	593, 832
BsiSI	CCGG	3 cut(s)	429, 669, 757
BslFI	GGGAC	2 cut(s)	607, 1133
BslI	CCNNNNNNNGG	2 cut(s)	548, 818
BsmAI	GTCTC	2 cut(s)	734, 902
BsmBI	CGTCTC	1 cut(s)	734
BsmFI	GGGAC	2 cut(s)	607, 1133
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	3 cut(s)	335, 840, 849
Bsp1286I	GDGCHC	3 cut(s)	593, 651, 832
Bsp143I	GATC	3 cut(s)	507, 634, 1291
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	1 cut(s)	1131
BspANI	GGCC	3 cut(s)	335, 840, 849
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	882, 1121
BspTI	CTTAAG	1 cut(s)	695
BsrFI	RCCGGY	1 cut(s)	668
BssAI	RCCGGY	1 cut(s)	668
BssECI	CCNNGG	2 cut(s)	58, 901
BssMI	GATC	3 cut(s)	507, 634, 1291
BssT1I	CCWWGG	1 cut(s)	58
Bst2UI	CCWGG	4 cut(s)	530, 793, 903, 1176
Bst4CI	ACNGT	5 cut(s)	256, 773, 964, 1082, 1100
BstAFI	CTTAAG	1 cut(s)	695
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	2 cut(s)	39, 1151
BstEII	GGTNACC	1 cut(s)	807
BstF5I	GGATG	1 cut(s)	1276
BstKTI	GATC	3 cut(s)	510, 637, 1294
BstMAI	GTCTC	2 cut(s)	734, 902
BstMBI	GATC	3 cut(s)	507, 634, 1291
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 846
BstNI	CCWGG	4 cut(s)	530, 793, 903, 1176
BstPI	GGTNACC	1 cut(s)	807
BstSCI	CCNGG	5 cut(s)	428, 528, 791, 901, 1174
BstSFI	CTRYAG	3 cut(s)	130, 153, 411
BstV1I	GCAGC	2 cut(s)	929, 1093
BstX2I	RGATCY	1 cut(s)	1291
BstXI	CCANNNNNNTGG	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	1291
BsuI	GTATCC	3 cut(s)	436, 549, 1198
BsuRI	GGCC	3 cut(s)	335, 840, 849
BtsCI	GGATG	1 cut(s)	1276
BtsI	GCAGTG	2 cut(s)	440, 1133
BtsIMutI	CAGTG	2 cut(s)	440, 1133
Cac8I	GCNNGC	1 cut(s)	324
CaiI	CAGNNNCTG	1 cut(s)	439
Cfr10I	RCCGGY	1 cut(s)	668
Cfr13I	GGNCC	3 cut(s)	333, 551, 1120
CsiI	ACCWGGT	2 cut(s)	528, 1174
Csp6I	GTAC	3 cut(s)	763, 960, 1039
CviAII	CATG	2 cut(s)	340, 511
CviQI	GTAC	3 cut(s)	763, 960, 1039
DdeI	CTNAG	2 cut(s)	39, 1151
DpnI	GATC	3 cut(s)	509, 636, 1293
DpnII	GATC	3 cut(s)	507, 634, 1291
Eco130I	CCWWGG	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	651
Eco47I	GGWCC	2 cut(s)	551, 1120
Eco91I	GGTNACC	1 cut(s)	807
EcoO109I	RGGNCCY	1 cut(s)	333
EcoO65I	GGTNACC	1 cut(s)	807
EcoRI	GAATTC	1 cut(s)	103
EcoRII	CCWGG	4 cut(s)	528, 791, 901, 1174
EcoT14I	CCWWGG	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	651
ErhI	CCWWGG	1 cut(s)	58
Esp3I	CGTCTC	1 cut(s)	734
FaeI	CATG	2 cut(s)	343, 514
FaiI	YATR	8 cut(s)	73, 91, 341, 512, 713, 895, 994, 1019
FalI	AAGNNNNNCTT	6 cut(s)	216, 248, 284, 316, 938, 970
FaqI	GGGAC	2 cut(s)	607, 1133
FatI	CATG	2 cut(s)	339, 510
FbaI	TGATCA	2 cut(s)	507, 634
Fnu4HI	GCNGC	3 cut(s)	6, 943, 1107
FokI	GGATG	1 cut(s)	1283
FriOI	GRGCYC	1 cut(s)	651
Fsp4HI	GCNGC	3 cut(s)	6, 943, 1107
FspBI	CTAG	3 cut(s)	59, 570, 594
GluI	GCNGC	3 cut(s)	6, 943, 1107
GsaI	CCCAGC	1 cut(s)	612
HaeIII	GGCC	3 cut(s)	335, 840, 849
HapII	CCGG	3 cut(s)	429, 669, 757
Hin1II	CATG	2 cut(s)	343, 514
HincII	GTYRAC	1 cut(s)	1261
HindII	GTYRAC	1 cut(s)	1261
HinfI	GANTC	6 cut(s)	347, 377, 481, 565, 715, 788
HpaII	CCGG	3 cut(s)	429, 669, 757
HphI	GGTGA	3 cut(s)	801, 989, 1195
Hpy166II	GTNNAC	1 cut(s)	1261
Hpy188I	TCNGA	4 cut(s)	183, 376, 605, 783
Hpy188III	TCNNGA	7 cut(s)	169, 196, 209, 472, 632, 676, 733
Hpy8I	GTNNAC	1 cut(s)	1261
HpyAV	CCTTC	3 cut(s)	310, 489, 894
HpyCH4III	ACNGT	5 cut(s)	256, 773, 964, 1082, 1100
HpyCH4V	TGCA	5 cut(s)	8, 32, 514, 945, 972
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 846
HpyF3I	CTNAG	2 cut(s)	39, 1151
Hsp92II	CATG	2 cut(s)	343, 514
Ksp22I	TGATCA	2 cut(s)	507, 634
Kzo9I	GATC	3 cut(s)	507, 634, 1291
LmnI	GCTCC	4 cut(s)	588, 835, 1149, 1239
Lsp1109I	GCAGC	2 cut(s)	929, 1093
LweI	GCATC	3 cut(s)	168, 202, 730
MabI	ACCWGGT	2 cut(s)	528, 1174
MaeI	CTAG	3 cut(s)	59, 570, 594
MaeIII	GTNAC	4 cut(s)	260, 353, 807, 1183
MalI	GATC	3 cut(s)	509, 636, 1293
MboI	GATC	3 cut(s)	507, 634, 1291
MboII	GAAGA	5 cut(s)	8, 11, 14, 647, 1173
MfeI	CAATTG	1 cut(s)	798
MflI	RGATCY	1 cut(s)	1291
MhlI	GDGCHC	3 cut(s)	593, 651, 832
MlyI	GAGTC	1 cut(s)	574
MmeI	TCCRAC	1 cut(s)	792
MroXI	GAANNNNTTC	2 cut(s)	299, 577
MseI	TTAA	7 cut(s)	219, 246, 273, 660, 696, 1286, 1296
MslI	CAYNNNNRTG	1 cut(s)	489
MspCI	CTTAAG	1 cut(s)	695
MspI	CCGG	3 cut(s)	429, 669, 757
MspR9I	CCNGG	5 cut(s)	430, 530, 793, 903, 1176
MunI	CAATTG	1 cut(s)	798
Mva1269I	GAATGC	1 cut(s)	301
MvaI	CCWGG	4 cut(s)	530, 793, 903, 1176
MwoI	GCNNNNNNNGC	2 cut(s)	332, 846
NciI	CCSGG	1 cut(s)	430
NdeII	GATC	3 cut(s)	507, 634, 1291
NlaIII	CATG	2 cut(s)	343, 514
NlaIV	GGNNCC	2 cut(s)	882, 1121
NmuCI	GTSAC	3 cut(s)	260, 807, 1183
OliI	CACNNNNGTG	1 cut(s)	489
PcsI	WCGNNNNNNNCGW	1 cut(s)	724
PctI	GAATGC	1 cut(s)	301
PdmI	GAANNNNTTC	2 cut(s)	299, 577
PfeI	GAWTC	5 cut(s)	347, 377, 481, 715, 788
PflMI	CCANNNNNTGG	2 cut(s)	548, 818
PkrI	GCNGC	3 cut(s)	7, 944, 1108
PleI	GAGTC	1 cut(s)	573
PpsI	GAGTC	1 cut(s)	573
Psp6I	CCWGG	4 cut(s)	528, 791, 901, 1174
PspEI	GGTNACC	1 cut(s)	807
PspFI	CCCAGC	1 cut(s)	608
PspGI	CCWGG	4 cut(s)	528, 791, 901, 1174
PspN4I	GGNNCC	2 cut(s)	882, 1121
PspPI	GGNCC	3 cut(s)	333, 551, 1120
PstNI	CAGNNNCTG	1 cut(s)	439
PsuI	RGATCY	1 cut(s)	1291
RsaI	GTAC	3 cut(s)	764, 961, 1040
RsaNI	GTAC	3 cut(s)	763, 960, 1039
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	7 cut(s)	219, 246, 273, 660, 696, 1286, 1296
SatI	GCNGC	3 cut(s)	6, 943, 1107
Sau3AI	GATC	3 cut(s)	507, 634, 1291
Sau96I	GGNCC	3 cut(s)	333, 551, 1120
SchI	GAGTC	1 cut(s)	574
ScrFI	CCNGG	5 cut(s)	430, 530, 793, 903, 1176
SduI	GDGCHC	3 cut(s)	593, 651, 832
SexAI	ACCWGGT	2 cut(s)	528, 1174
SfaNI	GCATC	3 cut(s)	168, 202, 730
SfcI	CTRYAG	3 cut(s)	130, 153, 411
SfiI	GGCCNNNNNGGCC	1 cut(s)	846
SinI	GGWCC	2 cut(s)	551, 1120
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	3 cut(s)	487, 695, 955
SmoI	CTYRAG	3 cut(s)	487, 695, 955
SsiI	CCGC	1 cut(s)	1131
SspI	AATATT	2 cut(s)	547, 578
SspMI	CTAG	3 cut(s)	59, 570, 594
StyD4I	CCNGG	5 cut(s)	428, 528, 791, 901, 1174
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	5 cut(s)	256, 773, 964, 1082, 1100
TaqI	TCGA	3 cut(s)	101, 168, 473
TatI	WGTACW	2 cut(s)	762, 959
TfiI	GAWTC	5 cut(s)	347, 377, 481, 715, 788
Tru1I	TTAA	7 cut(s)	219, 246, 273, 660, 696, 1286, 1296
Tru9I	TTAA	7 cut(s)	219, 246, 273, 660, 696, 1286, 1296
TscAI	CASTG	2 cut(s)	440, 1133
TseFI	GTSAC	3 cut(s)	260, 807, 1183
TseI	GCWGC	3 cut(s)	5, 942, 1106
Tsp45I	GTSAC	3 cut(s)	260, 807, 1183
TspDTI	ATGAA	4 cut(s)	728, 904, 981, 999
TspGWI	ACGGA	1 cut(s)	1026
TspRI	CASTG	2 cut(s)	440, 1133
Van91I	CCANNNNNTGG	2 cut(s)	548, 818
Vha464I	CTTAAG	1 cut(s)	695
VpaK11BI	GGWCC	2 cut(s)	551, 1120
XapI	RAATTY	4 cut(s)	103, 310, 853, 1298
XmaJI	CCTAGG	1 cut(s)	58
XmnI	GAANNNNTTC	2 cut(s)	299, 577
XspI	CTAG	3 cut(s)	59, 570, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.