Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Forward (+)

50051252 .. 50053216

Gene Structure 1965 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG301900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGCTTGATTCAGGTAACTTTGTCCTCTACAATTCTGATTCAAACATCATTTGGCAGACTTTTGATGTTCCAACAGATACCATTGTATCCGGGCAGCGTCTGTTGGCTGGAACAAAGCTCATCTCCTCCTTCTCGAACACGAATCATGCAAGTGGAAGGTTTCAAGTGATCATGCAGAGAGATGGCAACCTGGTTCAGTATCCAATTGGTCCATTTACATTGAGTTCTAATCAATATTCTTATTGGAACACTGGGACATTCACAGCTGGGAACAATGTGTCCCTCAATCTTGATCAAAATGAGGGGCTCTATCTTCTTGATTCCTCCGGTTTCAAGATAAAAAGTTTGTTTTCTCTTCAGAAAGACCTTTCTATGTATCGTAGCTATCGTCTGACGATTGATGCTGATGGAATACTCCGGTTGTACTCCTACAGTTTGGTTAAGAATGATTCCTGGTCAATCGATTGGTCACCAACTGATAGTAAGTGTGCTCCTATTGGCCTTTGTGGCGTAAATTCTTATTGTGTTCTTGTGGATCCGGAACCTTCCTGTGTATGTCTCCCTGGTTTCGTTTTCATCGACGAAGGCCAAAGATATTTAGGCTGCAAGAGGAACTTGAGTACAGTTGGTTGCAAAGGTGAGAATGAAACTTCATATTCTATTGTTGATGTGGATAACATAGATTGGGAAAACACTCCATACTCTATTCTATCATTGGATAAGACTGCTTGTAAAGAGGACTGTTTGATGGATTGTAACTGTGAAGTTGCGATATTTATGGACCAGCAGTGTAGAAAACAAAAGCTCCCTCTACGATTTGGAAGAACTCTCCAAAGCGATGTGGTGACAACCTTTGTCAAAAAGGGTACTACTGATGAGAGTTCAGGTATAAAAAGGGCCAATGAACTGGATAAGCTAGTGAAGGATGATGATGACATTGACATGAGTAAACTACGGGAGATGGTTAAGCTTGGTCTTTGCTGCATCCAGGAGGAGCCATCATTGCGCCCTTCGATGAAGAAGGTGGTACTAATGCTGGAAGATAATCTAGAGATACCATCCCCTCCAAATTCTTTCAGTTCCAGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

363

Amino Acids

40.63

Weight (kDa)

4.81

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	1 - 35	7.6e-07	D-mannose binding lectin
S_locus_glycop	PF00954	116 - 191	1.3e-07	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	538
AclWI	GGATC	2 cut(s)	530, 543
AcsI	RAATTY	2 cut(s)	514, 1069
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	4 cut(s)	425, 622, 868, 1029
AgsI	TTSAA	3 cut(s)	42, 164, 334
AjnI	CCWGG	4 cut(s)	189, 452, 562, 987
AloI	GAACNNNNNNTCC	2 cut(s)	263, 295
AluBI	AGCT	6 cut(s)	118, 266, 384, 805, 916, 970
AluI	AGCT	6 cut(s)	118, 266, 384, 805, 916, 970
Alw21I	GWGCWC	1 cut(s)	493
Alw26I	GTCTC	1 cut(s)	563
AlwI	GGATC	2 cut(s)	530, 543
AlwNI	CAGNNNCTG	1 cut(s)	100
Aor13HI	TCCGGA	1 cut(s)	538
AoxI	GGCC	3 cut(s)	499, 586, 897
ApeKI	GCWGC	3 cut(s)	94, 603, 981
ApoI	RAATTY	2 cut(s)	514, 1069
AspLEI	GCGC	1 cut(s)	1008
AspS9I	GGNCC	3 cut(s)	209, 781, 897
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	3 cut(s)	462, 650, 856
AvaII	GGWCC	2 cut(s)	209, 781
BaeI	ACNNNNGTAYC	4 cut(s)	69, 69, 102, 102
BamHI	GGATCC	1 cut(s)	535
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	3 cut(s)	106, 590, 968
BccI	CCATC	6 cut(s)	176, 401, 742, 955, 1006, 1066
BciT130I	CCWGG	4 cut(s)	191, 454, 564, 989
BciVI	GTATCC	2 cut(s)	97, 210
BclI	TGATCA	2 cut(s)	168, 292
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	563
BfaI	CTAG	2 cut(s)	917, 1049
BfmI	CTRYAG	1 cut(s)	430
BfuI	GTATCC	2 cut(s)	97, 210
BglI	GCCNNNNNGGC	1 cut(s)	507
BisI	GCNGC	3 cut(s)	95, 604, 982
BlsI	GCNGC	3 cut(s)	96, 605, 983
Bme1390I	CCNGG	5 cut(s)	91, 191, 454, 564, 989
Bme18I	GGWCC	2 cut(s)	209, 781
BmgT120I	GGNCC	3 cut(s)	209, 781, 897
BmiI	GGNNCC	3 cut(s)	537, 543, 996
BmrFI	CCNGG	5 cut(s)	91, 191, 454, 564, 989
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	2 cut(s)	391, 993
BmuI	ACTGGG	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	637
BpuMI	CCSGG	1 cut(s)	91
Bsa29I	ATCGAT	1 cut(s)	462
BsaJI	CCNNGG	1 cut(s)	562
BsaWI	WCCGGW	3 cut(s)	326, 417, 538
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bse1I	ACTGG	3 cut(s)	256, 912, 1083
Bse3DI	GCAATG	1 cut(s)	1001
BseAI	TCCGGA	1 cut(s)	538
BseBI	CCWGG	4 cut(s)	191, 454, 564, 989
BseCI	ATCGAT	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	562
BseGI	GGATG	3 cut(s)	931, 984, 1058
BseMI	GCAATG	1 cut(s)	1001
BseNI	ACTGG	3 cut(s)	256, 912, 1083
BseRI	GAGGAG	2 cut(s)	115, 1007
BseXI	GCAGC	3 cut(s)	106, 590, 968
BseYI	CCCAGC	1 cut(s)	266
BshFI	GGCC	3 cut(s)	501, 588, 899
BshVI	ATCGAT	1 cut(s)	462
BsiHKAI	GWGCWC	1 cut(s)	493
BsiSI	CCGG	4 cut(s)	90, 327, 418, 539
BslFI	GGGAC	2 cut(s)	265, 268
BsmAI	GTCTC	1 cut(s)	563
BsmFI	GGGAC	2 cut(s)	265, 268
BsnI	GGCC	3 cut(s)	501, 588, 899
Bsp1286I	GDGCHC	2 cut(s)	309, 493
Bsp13I	TCCGGA	1 cut(s)	538
Bsp143I	GATC	3 cut(s)	168, 292, 535
BspANI	GGCC	3 cut(s)	501, 588, 899
BspDI	ATCGAT	1 cut(s)	462
BspEI	TCCGGA	1 cut(s)	538
BspLI	GGNNCC	3 cut(s)	537, 543, 996
BspPI	GGATC	2 cut(s)	530, 543
BsrDI	GCAATG	1 cut(s)	1001
BsrI	ACTGG	3 cut(s)	256, 912, 1083
BssECI	CCNNGG	1 cut(s)	562
BssMI	GATC	3 cut(s)	168, 292, 535
Bst2UI	CCWGG	4 cut(s)	191, 454, 564, 989
Bst4CI	ACNGT	4 cut(s)	434, 625, 743, 761
Bst6I	CTCTTC	1 cut(s)	360
BstEII	GGTNACC	1 cut(s)	468
BstF5I	GGATG	3 cut(s)	931, 984, 1058
BstHHI	GCGC	1 cut(s)	1008
BstKTI	GATC	3 cut(s)	171, 295, 538
BstMAI	GTCTC	1 cut(s)	563
BstMBI	GATC	3 cut(s)	168, 292, 535
BstMWI	GCNNNNNNNGC	2 cut(s)	507, 1003
BstNI	CCWGG	4 cut(s)	191, 454, 564, 989
BstPI	GGTNACC	1 cut(s)	468
BstSCI	CCNGG	5 cut(s)	89, 189, 452, 562, 987
BstSFI	CTRYAG	1 cut(s)	430
BstV1I	GCAGC	3 cut(s)	106, 590, 968
BstX2I	RGATCY	1 cut(s)	535
BstXI	CCANNNNNNTGG	1 cut(s)	907
BstYI	RGATCY	1 cut(s)	535
Bsu15I	ATCGAT	1 cut(s)	462
BsuI	GTATCC	2 cut(s)	97, 210
BsuRI	GGCC	3 cut(s)	501, 588, 899
BsuTUI	ATCGAT	1 cut(s)	462
BtgZI	GCGATG	1 cut(s)	852
BtsCI	GGATG	3 cut(s)	931, 984, 1058
BtsI	GCAGTG	1 cut(s)	794
BtsIMutI	CAGTG	2 cut(s)	249, 794
CaiI	CAGNNNCTG	1 cut(s)	100
CfoI	GCGC	1 cut(s)	1008
Cfr13I	GGNCC	3 cut(s)	209, 781, 897
ClaI	ATCGAT	1 cut(s)	462
CseI	GACGC	1 cut(s)	86
CsiI	ACCWGGT	1 cut(s)	189
Csp6I	GTAC	4 cut(s)	424, 621, 867, 1028
CviAII	CATG	3 cut(s)	146, 172, 943
CviQI	GTAC	4 cut(s)	424, 621, 867, 1028
DpnI	GATC	3 cut(s)	170, 294, 537
DpnII	GATC	3 cut(s)	168, 292, 535
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	309
Eco47I	GGWCC	2 cut(s)	209, 781
Eco57I	CTGAAG	1 cut(s)	341
Eco91I	GGTNACC	1 cut(s)	468
EcoO65I	GGTNACC	1 cut(s)	468
EcoRII	CCWGG	4 cut(s)	189, 452, 562, 987
EcoT38I	GRGCYC	1 cut(s)	309
FaeI	CATG	3 cut(s)	149, 175, 946
FalI	AAGNNNNNCTT	2 cut(s)	599, 631
FaqI	GGGAC	2 cut(s)	265, 268
FatI	CATG	3 cut(s)	145, 171, 942
FbaI	TGATCA	2 cut(s)	168, 292
Fnu4HI	GCNGC	3 cut(s)	95, 604, 982
FokI	GGATG	3 cut(s)	938, 971, 1045
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	3 cut(s)	95, 604, 982
FspBI	CTAG	2 cut(s)	917, 1049
GlaI	GCGC	1 cut(s)	1007
GluI	GCNGC	3 cut(s)	95, 604, 982
GsaI	CCCAGC	1 cut(s)	270
HaeIII	GGCC	3 cut(s)	501, 588, 899
HapII	CCGG	4 cut(s)	90, 327, 418, 539
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	1008
Hin1II	CATG	3 cut(s)	149, 175, 946
Hin6I	GCGC	1 cut(s)	1006
HinP1I	GCGC	1 cut(s)	1006
HindIII	AAGCTT	1 cut(s)	968
HinfI	GANTC	5 cut(s)	8, 38, 142, 320, 449
HpaII	CCGG	4 cut(s)	90, 327, 418, 539
HphI	GGTGA	3 cut(s)	462, 650, 856
Hpy166II	GTNNAC	1 cut(s)	950
Hpy188I	TCNGA	3 cut(s)	37, 360, 393
Hpy188III	TCNNGA	6 cut(s)	133, 290, 317, 334, 539, 1049
Hpy8I	GTNNAC	1 cut(s)	950
Hpy99I	CGWCG	1 cut(s)	584
HpyAV	CCTTC	7 cut(s)	139, 150, 555, 578, 916, 1015, 1020
HpyCH4III	ACNGT	4 cut(s)	434, 625, 743, 761
HpyCH4V	TGCA	5 cut(s)	149, 175, 606, 633, 984
HpyF10VI	GCNNNNNNNGC	2 cut(s)	507, 1003
Hsp92II	CATG	3 cut(s)	149, 175, 946
HspAI	GCGC	1 cut(s)	1006
Kpn2I	TCCGGA	1 cut(s)	538
Ksp22I	TGATCA	2 cut(s)	168, 292
Kzo9I	GATC	3 cut(s)	168, 292, 535
LmnI	GCTCC	3 cut(s)	496, 810, 994
Lsp1109I	GCAGC	3 cut(s)	106, 590, 968
LweI	GCATC	2 cut(s)	391, 993
MabI	ACCWGGT	1 cut(s)	189
MaeI	CTAG	2 cut(s)	917, 1049
MaeIII	GTNAC	4 cut(s)	14, 468, 755, 844
MalI	GATC	3 cut(s)	170, 294, 537
MboI	GATC	3 cut(s)	168, 292, 535
MboII	GAAGA	5 cut(s)	305, 347, 834, 1030, 1052
MfeI	CAATTG	1 cut(s)	204
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	2 cut(s)	309, 493
MluCI	AATT	4 cut(s)	31, 204, 514, 1069
MmeI	TCCRAC	1 cut(s)	95
MroI	TCCGGA	1 cut(s)	538
MseI	TTAA	2 cut(s)	441, 966
MslI	CAYNNNNRTG	2 cut(s)	150, 941
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	4 cut(s)	90, 327, 418, 539
MspR9I	CCNGG	5 cut(s)	91, 191, 454, 564, 989
MunI	CAATTG	1 cut(s)	204
MvaI	CCWGG	4 cut(s)	191, 454, 564, 989
MwoI	GCNNNNNNNGC	2 cut(s)	507, 1003
NciI	CCSGG	1 cut(s)	91
NdeII	GATC	3 cut(s)	168, 292, 535
NlaIII	CATG	3 cut(s)	149, 175, 946
NlaIV	GGNNCC	3 cut(s)	537, 543, 996
NmuCI	GTSAC	2 cut(s)	468, 844
PcsI	WCGNNNNNNNCGW	2 cut(s)	385, 576
PfeI	GAWTC	5 cut(s)	8, 38, 142, 320, 449
PfoI	TCCNGGA	1 cut(s)	987
PkrI	GCNGC	3 cut(s)	96, 605, 983
Psp6I	CCWGG	4 cut(s)	189, 452, 562, 987
PspEI	GGTNACC	1 cut(s)	468
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	4 cut(s)	189, 452, 562, 987
PspN4I	GGNNCC	3 cut(s)	537, 543, 996
PspPI	GGNCC	3 cut(s)	209, 781, 897
PstNI	CAGNNNCTG	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	535
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	4 cut(s)	425, 622, 868, 1029
RsaNI	GTAC	4 cut(s)	424, 621, 867, 1028
RseI	CAYNNNNRTG	2 cut(s)	150, 941
SaqAI	TTAA	2 cut(s)	441, 966
SatI	GCNGC	3 cut(s)	95, 604, 982
Sau3AI	GATC	3 cut(s)	168, 292, 535
Sau96I	GGNCC	3 cut(s)	209, 781, 897
ScrFI	CCNGG	5 cut(s)	91, 191, 454, 564, 989
SduI	GDGCHC	2 cut(s)	309, 493
SexAI	ACCWGGT	1 cut(s)	189
SfaNI	GCATC	2 cut(s)	391, 993
SfcI	CTRYAG	1 cut(s)	430
SinI	GGWCC	2 cut(s)	209, 781
SmiMI	CAYNNNNRTG	2 cut(s)	150, 941
SmlI	CTYRAG	1 cut(s)	616
SmoI	CTYRAG	1 cut(s)	616
Sse9I	AATT	4 cut(s)	31, 204, 514, 1069
SspI	AATATT	1 cut(s)	236
SspMI	CTAG	2 cut(s)	917, 1049
StyD4I	CCNGG	5 cut(s)	89, 189, 452, 562, 987
TaaI	ACNGT	4 cut(s)	434, 625, 743, 761
TaqI	TCGA	4 cut(s)	134, 462, 579, 1013
TasI	AATT	4 cut(s)	31, 204, 514, 1069
TatI	WGTACW	2 cut(s)	423, 620
TfiI	GAWTC	5 cut(s)	8, 38, 142, 320, 449
Tru1I	TTAA	2 cut(s)	441, 966
Tru9I	TTAA	2 cut(s)	441, 966
TscAI	CASTG	2 cut(s)	256, 794
TseFI	GTSAC	2 cut(s)	468, 844
TseI	GCWGC	3 cut(s)	94, 603, 981
Tsp45I	GTSAC	2 cut(s)	468, 844
TspDTI	ATGAA	5 cut(s)	565, 642, 660, 918, 1031
TspRI	CASTG	2 cut(s)	256, 794
VpaK11BI	GGWCC	2 cut(s)	209, 781
XapI	RAATTY	2 cut(s)	514, 1069
XbaI	TCTAGA	1 cut(s)	1048
XspI	CTAG	2 cut(s)	917, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.