Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Reverse (-)

37834893 .. 37837362

Gene Structure 2470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG212100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGCTTGATTCAGGTAACTTTGTGCTCTACAATTCTGATTTAAACATCATTTGGCAGACTTTTGATGTTCCAACAGATACCATTGTATCCGGGCAGAGTTTGTTGGCTGGAACAAAGCTCATCTCCTCCGTCTCGAACACGAATCACTCAAGTGGAAGGTTTCAACTGATCATGCAGGGAGATGGCAACCTGGTTCAGTATCCAATTGGTCCATTTACAGTGAGTCCTGATCAATATGCTTATTGGAACACTGAGACATTCACAGCAGGGAACAATGTGTCCCTCAATCTTGATCAAAATGAGGGGCTCTATCTTCTTAATTCCACCGGTTTCAAGATAAGAAGTATATTTTCTTTTCAGAAAGGCCTTTCTATGTATCGTAGCTATCGTTTGACGATTGATGCAGATGGAATACTCCGGTTGTACTCCTATAGTTTGGGTCAGAATTATTCCTGGTCAATTGAGTGGTCACCACCAATTGTTGATAAGTGTGCTCCTCCTGGACTCTGTGGCCTAAATTCTTATTGTGTTCTTGGGGAACCAGAAATTTCTTGTGTATGTCTTCCTGGTTTCGTTTTCATCGACGAGGGCCAAAGATATTTAGGATGCAAGAGAAACTCGAGTACAGTTGGCTGCAAAGGTGAGAATGAAACTTCATATTCTATTGTTGATGTGGACAACATGGATTGGGAAAACACTCCATACTCTATTCTATCATTGGATAAGACTGCTTGTAAAGATGACTGTTTGATGGATTCTAACTGTGAAGCTGCAGTATTTAGGGACCAGCAGTGCAGAAAACAAAAGCTCCCTCTAATATTTGGAAGAACTCCCCAAACCTCTGTGGTGACAACCTTTGTCAAAAAGGTTACTAATGATCAGAGTTCAGGGACAAAAAGGAGAGGTTCGACCATGGAGATACCTGAGGATCTATTAACTCTTGAGAATTGGATGTACCATTGTTTGGAGGCCAATGAACTGGATAAGCTAGTGAAGGATGATGATGAGATTGACACGAGTAAACTACGGGAGATGGTTAAGCTTGGTCTTTGCTGCATCCAGGAGGAGCCACCATTGCGCCCTTCGATGAAGAAGGTGGTACTAATGCTAGAAGGGATTCTAGAGATACCATCCCCTCCAAATTCTTTCAGTTCCAGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

387

Amino Acids

43.35

Weight (kDa)

4.81

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	1 - 35	4.9e-06	D-mannose binding lectin
S_locus_glycop	PF00954	82 - 192	5.5e-06	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	964
AclWI	GGATC	1 cut(s)	936
AcsI	RAATTY	3 cut(s)	517, 546, 1141
AfaI	GTAC	4 cut(s)	425, 625, 956, 1101
AfiI	CCNNNNNNNGG	1 cut(s)	964
AgeI	ACCGGT	1 cut(s)	326
AgsI	TTSAA	2 cut(s)	164, 334
AjnI	CCWGG	5 cut(s)	189, 452, 499, 565, 1059
AleI	CACNNNNGTG	1 cut(s)	150
AloI	GAACNNNNNNTCC	2 cut(s)	263, 295
AluBI	AGCT	6 cut(s)	118, 384, 770, 808, 988, 1042
AluI	AGCT	6 cut(s)	118, 384, 770, 808, 988, 1042
Alw21I	GWGCWC	2 cut(s)	27, 496
Alw26I	GTCTC	2 cut(s)	136, 248
AlwI	GGATC	1 cut(s)	936
Ama87I	CYCGRG	1 cut(s)	619
AoxI	GGCC	4 cut(s)	364, 511, 589, 969
ApeKI	GCWGC	3 cut(s)	633, 770, 1053
ApoI	RAATTY	3 cut(s)	517, 546, 1141
AsiGI	ACCGGT	1 cut(s)	326
Asp700I	GAANNNNTTC	1 cut(s)	1116
AspLEI	GCGC	1 cut(s)	1080
AspS9I	GGNCC	3 cut(s)	209, 589, 784
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	3 cut(s)	462, 653, 859
AvaI	CYCGRG	1 cut(s)	619
AvaII	GGWCC	2 cut(s)	209, 784
AxyI	CCTNAGG	1 cut(s)	924
BaeI	ACNNNNGTAYC	4 cut(s)	69, 69, 102, 102
BanII	GRGCYC	1 cut(s)	309
BauI	CACGAG	1 cut(s)	1015
BbsI	GAAGAC	1 cut(s)	554
Bbv12I	GWGCWC	2 cut(s)	27, 496
BbvI	GCAGC	3 cut(s)	620, 757, 1040
BccI	CCATC	5 cut(s)	176, 401, 745, 1027, 1138
BciT130I	CCWGG	5 cut(s)	191, 454, 501, 567, 1061
BciVI	GTATCC	2 cut(s)	97, 210
BclI	TGATCA	4 cut(s)	168, 229, 292, 877
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	2 cut(s)	136, 248
BfaI	CTAG	3 cut(s)	989, 1109, 1121
BfmI	CTRYAG	2 cut(s)	430, 771
BfuI	GTATCC	2 cut(s)	97, 210
BisI	GCNGC	3 cut(s)	634, 771, 1054
BlsI	GCNGC	3 cut(s)	635, 772, 1055
Bme1390I	CCNGG	6 cut(s)	91, 191, 454, 501, 567, 1061
Bme18I	GGWCC	2 cut(s)	209, 784
BmeT110I	CYCGRG	1 cut(s)	619
BmgT120I	GGNCC	3 cut(s)	209, 589, 784
BmiI	GGNNCC	3 cut(s)	540, 785, 1068
BmrFI	CCNGG	6 cut(s)	91, 191, 454, 501, 567, 1061
BmsI	GCATC	3 cut(s)	391, 596, 1065
BpiI	GAAGAC	1 cut(s)	554
BpuEI	CTTGAG	2 cut(s)	133, 962
BpuMI	CCSGG	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	912
BsaWI	WCCGGW	2 cut(s)	326, 417
BsaXI	ACNNNNNCTCC	2 cut(s)	792, 822
Bsc4I	CCNNNNNNNGG	1 cut(s)	964
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	984
Bse21I	CCTNAGG	1 cut(s)	924
Bse3DI	GCAATG	1 cut(s)	1073
BseBI	CCWGG	5 cut(s)	191, 454, 501, 567, 1061
BseDI	CCNNGG	1 cut(s)	912
BseGI	GGATG	5 cut(s)	611, 957, 1003, 1056, 1130
BseLI	CCNNNNNNNGG	1 cut(s)	964
BseMI	GCAATG	1 cut(s)	1073
BseMII	CTCAG	2 cut(s)	243, 915
BseNI	ACTGG	1 cut(s)	984
BseRI	GAGGAG	3 cut(s)	115, 486, 1079
BseXI	GCAGC	3 cut(s)	620, 757, 1040
BsgI	GTGCAG	1 cut(s)	814
BshFI	GGCC	4 cut(s)	366, 513, 591, 971
BshTI	ACCGGT	1 cut(s)	326
BsiHKAI	GWGCWC	2 cut(s)	27, 496
BsiHKCI	CYCGRG	1 cut(s)	619
BsiSI	CCGG	3 cut(s)	90, 327, 418
BslFI	GGGAC	3 cut(s)	265, 797, 904
BslI	CCNNNNNNNGG	1 cut(s)	964
BsmAI	GTCTC	2 cut(s)	136, 248
BsmBI	CGTCTC	1 cut(s)	136
BsmFI	GGGAC	3 cut(s)	265, 797, 904
BsnI	GGCC	4 cut(s)	366, 513, 591, 971
BsoBI	CYCGRG	1 cut(s)	619
Bsp1286I	GDGCHC	3 cut(s)	27, 309, 496
Bsp143I	GATC	5 cut(s)	168, 229, 292, 877, 928
Bsp19I	CCATGG	1 cut(s)	912
BspANI	GGCC	4 cut(s)	366, 513, 591, 971
BspCNI	CTCAG	2 cut(s)	244, 916
BspLI	GGNNCC	3 cut(s)	540, 785, 1068
BspMAI	CTGCAG	1 cut(s)	775
BspPI	GGATC	1 cut(s)	936
BsrDI	GCAATG	1 cut(s)	1073
BsrFI	RCCGGY	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	984
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	912
BssMI	GATC	5 cut(s)	168, 229, 292, 877, 928
BssSI	CACGAG	1 cut(s)	1015
BssT1I	CCWWGG	1 cut(s)	912
Bst2BI	CACGAG	1 cut(s)	1015
Bst2UI	CCWGG	5 cut(s)	191, 454, 501, 567, 1061
Bst4CI	ACNGT	4 cut(s)	220, 628, 746, 764
BstDEI	CTNAG	2 cut(s)	252, 924
BstDSI	CCRYGG	1 cut(s)	912
BstEII	GGTNACC	1 cut(s)	468
BstF5I	GGATG	5 cut(s)	611, 957, 1003, 1056, 1130
BstHHI	GCGC	1 cut(s)	1080
BstKTI	GATC	5 cut(s)	171, 232, 295, 880, 931
BstMAI	GTCTC	2 cut(s)	136, 248
BstMBI	GATC	5 cut(s)	168, 229, 292, 877, 928
BstMWI	GCNNNNNNNGC	1 cut(s)	1075
BstNI	CCWGG	5 cut(s)	191, 454, 501, 567, 1061
BstPI	GGTNACC	1 cut(s)	468
BstSCI	CCNGG	6 cut(s)	89, 189, 452, 499, 565, 1059
BstSFI	CTRYAG	2 cut(s)	430, 771
BstV1I	GCAGC	3 cut(s)	620, 757, 1040
BstV2I	GAAGAC	1 cut(s)	554
BstX2I	RGATCY	1 cut(s)	928
BstXI	CCANNNNNNTGG	1 cut(s)	979
BstYI	RGATCY	1 cut(s)	928
Bsu36I	CCTNAGG	1 cut(s)	924
BsuI	GTATCC	2 cut(s)	97, 210
BsuRI	GGCC	4 cut(s)	366, 513, 591, 971
BtgI	CCRYGG	1 cut(s)	912
BtsCI	GGATG	5 cut(s)	611, 957, 1003, 1056, 1130
BtsI	GCAGTG	1 cut(s)	797
BtsIMutI	CAGTG	3 cut(s)	225, 249, 797
CfoI	GCGC	1 cut(s)	1080
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	3 cut(s)	209, 589, 784
CsiI	ACCWGGT	1 cut(s)	189
Csp6I	GTAC	4 cut(s)	424, 624, 955, 1100
CspAI	ACCGGT	1 cut(s)	326
CviAII	CATG	3 cut(s)	172, 682, 913
CviQI	GTAC	4 cut(s)	424, 624, 955, 1100
DdeI	CTNAG	2 cut(s)	252, 924
DpnI	GATC	5 cut(s)	170, 231, 294, 879, 930
DpnII	GATC	5 cut(s)	168, 229, 292, 877, 928
DraI	TTTAAA	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	912
Eco147I	AGGCCT	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	309
Eco47I	GGWCC	2 cut(s)	209, 784
Eco81I	CCTNAGG	1 cut(s)	924
Eco88I	CYCGRG	1 cut(s)	619
Eco91I	GGTNACC	1 cut(s)	468
EcoO65I	GGTNACC	1 cut(s)	468
EcoRII	CCWGG	5 cut(s)	189, 452, 499, 565, 1059
EcoT14I	CCWWGG	1 cut(s)	912
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	912
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	3 cut(s)	175, 685, 916
FaqI	GGGAC	3 cut(s)	265, 797, 904
FatI	CATG	3 cut(s)	171, 681, 912
FbaI	TGATCA	4 cut(s)	168, 229, 292, 877
Fnu4HI	GCNGC	3 cut(s)	634, 771, 1054
FokI	GGATG	5 cut(s)	618, 964, 1010, 1043, 1117
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	3 cut(s)	634, 771, 1054
FspBI	CTAG	3 cut(s)	989, 1109, 1121
GlaI	GCGC	1 cut(s)	1079
GluI	GCNGC	3 cut(s)	634, 771, 1054
HaeIII	GGCC	4 cut(s)	366, 513, 591, 971
HapII	CCGG	3 cut(s)	90, 327, 418
HhaI	GCGC	1 cut(s)	1080
Hin1II	CATG	3 cut(s)	175, 685, 916
Hin6I	GCGC	1 cut(s)	1078
HinP1I	GCGC	1 cut(s)	1078
HindIII	AAGCTT	1 cut(s)	1040
HinfI	GANTC	6 cut(s)	8, 142, 223, 504, 755, 1117
HpaII	CCGG	3 cut(s)	90, 327, 418
HphI	GGTGA	3 cut(s)	462, 653, 859
Hpy166II	GTNNAC	2 cut(s)	676, 1022
Hpy188I	TCNGA	4 cut(s)	37, 360, 444, 882
Hpy188III	TCNNGA	7 cut(s)	133, 227, 290, 334, 941, 1121, 1155
Hpy8I	GTNNAC	2 cut(s)	676, 1022
Hpy99I	CGWCG	1 cut(s)	587
HpyAV	CCTTC	5 cut(s)	150, 988, 1087, 1092, 1106
HpyCH4III	ACNGT	4 cut(s)	220, 628, 746, 764
HpyCH4V	TGCA	7 cut(s)	175, 404, 609, 636, 773, 795, 1056
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1075
HpyF3I	CTNAG	2 cut(s)	252, 924
Hsp92II	CATG	3 cut(s)	175, 685, 916
HspAI	GCGC	1 cut(s)	1078
Ksp22I	TGATCA	4 cut(s)	168, 229, 292, 877
Kzo9I	GATC	5 cut(s)	168, 229, 292, 877, 928
LmnI	GCTCC	3 cut(s)	499, 813, 1066
Lsp1109I	GCAGC	3 cut(s)	620, 757, 1040
LweI	GCATC	3 cut(s)	391, 596, 1065
MabI	ACCWGGT	1 cut(s)	189
MaeI	CTAG	3 cut(s)	989, 1109, 1121
MaeIII	GTNAC	4 cut(s)	14, 468, 847, 868
MalI	GATC	5 cut(s)	170, 231, 294, 879, 930
MboI	GATC	5 cut(s)	168, 229, 292, 877, 928
MboII	GAAGA	4 cut(s)	305, 554, 837, 1102
MfeI	CAATTG	3 cut(s)	204, 459, 477
MflI	RGATCY	1 cut(s)	928
MhlI	GDGCHC	3 cut(s)	27, 309, 496
MlyI	GAGTC	2 cut(s)	232, 498
MmeI	TCCRAC	1 cut(s)	95
MroXI	GAANNNNTTC	1 cut(s)	1116
MseI	TTAA	4 cut(s)	41, 318, 935, 1038
MslI	CAYNNNNRTG	1 cut(s)	150
MspI	CCGG	3 cut(s)	90, 327, 418
MspR9I	CCNGG	6 cut(s)	91, 191, 454, 501, 567, 1061
MunI	CAATTG	3 cut(s)	204, 459, 477
MvaI	CCWGG	5 cut(s)	191, 454, 501, 567, 1061
MwoI	GCNNNNNNNGC	1 cut(s)	1075
NciI	CCSGG	1 cut(s)	91
NcoI	CCATGG	1 cut(s)	912
NdeII	GATC	5 cut(s)	168, 229, 292, 877, 928
NlaIII	CATG	3 cut(s)	175, 685, 916
NlaIV	GGNNCC	3 cut(s)	540, 785, 1068
NmuCI	GTSAC	2 cut(s)	468, 847
OliI	CACNNNNGTG	1 cut(s)	150
PaeR7I	CTCGAG	1 cut(s)	619
PceI	AGGCCT	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	2 cut(s)	385, 579
PdmI	GAANNNNTTC	1 cut(s)	1116
PfeI	GAWTC	4 cut(s)	8, 142, 755, 1117
PflMI	CCANNNNNTGG	1 cut(s)	964
PfoI	TCCNGGA	2 cut(s)	499, 1059
PinAI	ACCGGT	1 cut(s)	326
PkrI	GCNGC	3 cut(s)	635, 772, 1055
PleI	GAGTC	2 cut(s)	231, 498
PpsI	GAGTC	2 cut(s)	231, 498
Psp6I	CCWGG	5 cut(s)	189, 452, 499, 565, 1059
PspEI	GGTNACC	1 cut(s)	468
PspGI	CCWGG	5 cut(s)	189, 452, 499, 565, 1059
PspN4I	GGNNCC	3 cut(s)	540, 785, 1068
PspPI	GGNCC	3 cut(s)	209, 589, 784
PspXI	VCTCGAGB	1 cut(s)	619
PstI	CTGCAG	1 cut(s)	775
PsuI	RGATCY	1 cut(s)	928
RsaI	GTAC	4 cut(s)	425, 625, 956, 1101
RsaNI	GTAC	4 cut(s)	424, 624, 955, 1100
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	4 cut(s)	41, 318, 935, 1038
SatI	GCNGC	3 cut(s)	634, 771, 1054
Sau3AI	GATC	5 cut(s)	168, 229, 292, 877, 928
Sau96I	GGNCC	3 cut(s)	209, 589, 784
SchI	GAGTC	2 cut(s)	232, 498
ScrFI	CCNGG	6 cut(s)	91, 191, 454, 501, 567, 1061
SduI	GDGCHC	3 cut(s)	27, 309, 496
SexAI	ACCWGGT	1 cut(s)	189
SfaNI	GCATC	3 cut(s)	391, 596, 1065
SfcI	CTRYAG	2 cut(s)	430, 771
Sfr274I	CTCGAG	1 cut(s)	619
SinI	GGWCC	2 cut(s)	209, 784
SlaI	CTCGAG	1 cut(s)	619
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	3 cut(s)	148, 619, 941
SmoI	CTYRAG	3 cut(s)	148, 619, 941
SseBI	AGGCCT	1 cut(s)	366
SspI	AATATT	1 cut(s)	819
SspMI	CTAG	3 cut(s)	989, 1109, 1121
StuI	AGGCCT	1 cut(s)	366
StyD4I	CCNGG	6 cut(s)	89, 189, 452, 499, 565, 1059
StyI	CCWWGG	1 cut(s)	912
TaaI	ACNGT	4 cut(s)	220, 628, 746, 764
TaqI	TCGA	5 cut(s)	134, 582, 620, 908, 1085
TatI	WGTACW	2 cut(s)	423, 623
TfiI	GAWTC	4 cut(s)	8, 142, 755, 1117
Tru1I	TTAA	4 cut(s)	41, 318, 935, 1038
Tru9I	TTAA	4 cut(s)	41, 318, 935, 1038
TscAI	CASTG	3 cut(s)	225, 256, 797
TseFI	GTSAC	2 cut(s)	468, 847
TseI	GCWGC	3 cut(s)	633, 770, 1053
Tsp45I	GTSAC	2 cut(s)	468, 847
TspDTI	ATGAA	5 cut(s)	568, 645, 663, 990, 1103
TspGWI	ACGGA	1 cut(s)	118
TspRI	CASTG	3 cut(s)	225, 256, 797
Van91I	CCANNNNNTGG	1 cut(s)	964
VpaK11BI	GGWCC	2 cut(s)	209, 784
XapI	RAATTY	3 cut(s)	517, 546, 1141
XbaI	TCTAGA	1 cut(s)	1120
XhoI	CTCGAG	1 cut(s)	619
XmnI	GAANNNNTTC	1 cut(s)	1116
XspI	CTAG	3 cut(s)	989, 1109, 1121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.