Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Forward (+)

33384629 .. 33387974

Gene Structure 3346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00192240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCTTGATTCAGGTAACTTTGTGCTCTACAATTCTGATTCAAACATCATTTGGCAGACTTTTGATGTTCCAACAAATACCATTGTATCCGGGCAGCGTCTGTTGGCTGGAACAAAGCTCATCTCCTCCGTCTCGAACATGAATCACTCAAGTGGAAGGCTTCAACTGTTCATGCAGCCAGATGGCAACCTGATTCAGTATCCAATTGGTCCATTTACTGTGAGTCCTAATCAATATGCTTATTGGAACACTAGGACATTCACAGCAAGGAACAATGTATCCCTCAATCTTGATCAAAATGAGGGGCTCTATCTTCTTAATTCCACCGGTTTCAAGATAATTTGTTTATTTTCTCTTCAGAAAGGCCTTTCTATGTATCGTAGCTATCGTTTGACGATTGTTTCTTATGGAATACTCCGGTTGTACTCCTATAGTTTGGGTCATAATTATTCCTGGTCAATTGAGTGGTCACCACCAATTGTTGATAAGTGTGCTCCTCCTGGACTCTGTGGTCTAAATTCTTATTTTGTTCTTGGGGAACCGGAACCTTCTTGTGTATGTCTCCCTGGTTTCGTTTTCATCGACGAGGGCCAAAGATATTTAGGTTGCAAGAGAAACTTGAGTACGGTTGGTTGCAAAGGTGAGAATGAAACTTCTTATTCTATTGTGGATGTGGATAACATAGATTGGGAAAACACTCCATACTCTATTCTATCATTGGATAAGACTGCTTGTAAAGATGACTGTTTGATGGATTGTAACTGCGAAGCTGCAGTATTTAGGGACCAGCAATGCAGAAAACAAAAGCTCCCTCTAATATTTGGAAGAACTCCCCAAACCGCTGTGGTGACAACCTTTGTCAAAAAGGTTACTAATGATCAGAGTTCAGGGACAAAAAGGATATCGTGTTTGGGATTACCGAAAAGTTACAAATTCAGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

314

Amino Acids

35.27

Weight (kDa)

8.16

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	1 - 35	2e-06	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	510
AciI	CCGC	1 cut(s)	840
AcsI	RAATTY	2 cut(s)	517, 932
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	2 cut(s)	425, 625
AgeI	ACCGGT	1 cut(s)	326
AgsI	TTSAA	3 cut(s)	42, 164, 334
AjnI	CCWGG	3 cut(s)	452, 499, 565
AleI	CACNNNNGTG	1 cut(s)	150
AloI	GAACNNNNNNTCC	2 cut(s)	263, 295
AluBI	AGCT	5 cut(s)	118, 384, 770, 808, 939
AluI	AGCT	5 cut(s)	118, 384, 770, 808, 939
Alw21I	GWGCWC	2 cut(s)	27, 496
Alw26I	GTCTC	2 cut(s)	136, 566
AlwNI	CAGNNNCTG	1 cut(s)	100
AoxI	GGCC	2 cut(s)	364, 589
ApeKI	GCWGC	3 cut(s)	94, 175, 770
ApoI	RAATTY	2 cut(s)	517, 932
AsiGI	ACCGGT	1 cut(s)	326
AspS9I	GGNCC	3 cut(s)	209, 589, 784
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	3 cut(s)	462, 653, 859
AvaII	GGWCC	2 cut(s)	209, 784
BaeI	ACNNNNGTAYC	2 cut(s)	69, 102
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	2 cut(s)	27, 496
BbvI	GCAGC	3 cut(s)	106, 187, 757
BccI	CCATC	2 cut(s)	176, 745
BciT130I	CCWGG	3 cut(s)	454, 501, 567
BciVI	GTATCC	3 cut(s)	97, 210, 289
BclI	TGATCA	2 cut(s)	292, 877
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	2 cut(s)	136, 566
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	2 cut(s)	430, 771
BfuI	GTATCC	3 cut(s)	97, 210, 289
BisI	GCNGC	3 cut(s)	95, 176, 771
BlsI	GCNGC	3 cut(s)	96, 177, 772
Bme1390I	CCNGG	4 cut(s)	91, 454, 501, 567
Bme18I	GGWCC	2 cut(s)	209, 784
BmgT120I	GGNCC	3 cut(s)	209, 589, 784
BmiI	GGNNCC	3 cut(s)	540, 546, 785
BmrFI	CCNGG	4 cut(s)	91, 454, 501, 567
BpuEI	CTTGAG	2 cut(s)	133, 640
BpuMI	CCSGG	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	565
BsaWI	WCCGGW	3 cut(s)	326, 417, 541
BsaXI	ACNNNNNCTCC	2 cut(s)	792, 822
Bse118I	RCCGGY	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	797
BseBI	CCWGG	3 cut(s)	454, 501, 567
BseDI	CCNNGG	1 cut(s)	565
BseGI	GGATG	1 cut(s)	676
BseMI	GCAATG	1 cut(s)	797
BseRI	GAGGAG	2 cut(s)	115, 486
BseXI	GCAGC	3 cut(s)	106, 187, 757
BshFI	GGCC	2 cut(s)	366, 591
BshTI	ACCGGT	1 cut(s)	326
BsiHKAI	GWGCWC	2 cut(s)	27, 496
BsiSI	CCGG	4 cut(s)	90, 327, 418, 542
BslFI	GGGAC	2 cut(s)	797, 904
BsmAI	GTCTC	2 cut(s)	136, 566
BsmBI	CGTCTC	1 cut(s)	136
BsmFI	GGGAC	2 cut(s)	797, 904
BsnI	GGCC	2 cut(s)	366, 591
Bsp1286I	GDGCHC	3 cut(s)	27, 309, 496
Bsp143I	GATC	2 cut(s)	292, 877
BspACI	CCGC	1 cut(s)	840
BspANI	GGCC	2 cut(s)	366, 591
BspLI	GGNNCC	3 cut(s)	540, 546, 785
BspMAI	CTGCAG	1 cut(s)	775
BsrDI	GCAATG	1 cut(s)	797
BsrFI	RCCGGY	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	565
BssMI	GATC	2 cut(s)	292, 877
Bst2UI	CCWGG	3 cut(s)	454, 501, 567
Bst4CI	ACNGT	4 cut(s)	168, 220, 628, 746
Bst6I	CTCTTC	1 cut(s)	360
BstEII	GGTNACC	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	676
BstKTI	GATC	2 cut(s)	295, 880
BstMAI	GTCTC	2 cut(s)	136, 566
BstMBI	GATC	2 cut(s)	292, 877
BstNI	CCWGG	3 cut(s)	454, 501, 567
BstPI	GGTNACC	1 cut(s)	468
BstSCI	CCNGG	4 cut(s)	89, 452, 499, 565
BstSFI	CTRYAG	2 cut(s)	430, 771
BstV1I	GCAGC	3 cut(s)	106, 187, 757
BsuI	GTATCC	3 cut(s)	97, 210, 289
BsuRI	GGCC	2 cut(s)	366, 591
BtsCI	GGATG	1 cut(s)	676
CaiI	CAGNNNCTG	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	3 cut(s)	209, 589, 784
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	2 cut(s)	424, 624
CspAI	ACCGGT	1 cut(s)	326
CviAII	CATG	2 cut(s)	139, 172
CviQI	GTAC	2 cut(s)	424, 624
DpnI	GATC	2 cut(s)	294, 879
DpnII	GATC	2 cut(s)	292, 877
DrdI	GACNNNNNNGTC	1 cut(s)	510
DseDI	GACNNNNNNGTC	1 cut(s)	510
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco147I	AGGCCT	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	309
Eco32I	GATATC	1 cut(s)	903
Eco47I	GGWCC	2 cut(s)	209, 784
Eco57I	CTGAAG	1 cut(s)	341
Eco91I	GGTNACC	1 cut(s)	468
EcoO65I	GGTNACC	1 cut(s)	468
EcoRII	CCWGG	3 cut(s)	452, 499, 565
EcoRV	GATATC	1 cut(s)	903
EcoT38I	GRGCYC	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	2 cut(s)	142, 175
FalI	AAGNNNNNCTT	2 cut(s)	602, 634
FaqI	GGGAC	2 cut(s)	797, 904
FatI	CATG	2 cut(s)	138, 171
FbaI	TGATCA	2 cut(s)	292, 877
Fnu4HI	GCNGC	3 cut(s)	95, 176, 771
FokI	GGATG	1 cut(s)	683
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	3 cut(s)	95, 176, 771
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	3 cut(s)	95, 176, 771
HaeIII	GGCC	2 cut(s)	366, 591
HapII	CCGG	4 cut(s)	90, 327, 418, 542
HgaI	GACGC	1 cut(s)	86
Hin1II	CATG	2 cut(s)	142, 175
HinfI	GANTC	6 cut(s)	8, 38, 142, 193, 223, 504
HpaII	CCGG	4 cut(s)	90, 327, 418, 542
HphI	GGTGA	3 cut(s)	462, 653, 859
Hpy188I	TCNGA	3 cut(s)	37, 360, 882
Hpy188III	TCNNGA	3 cut(s)	133, 290, 334
Hpy99I	CGWCG	1 cut(s)	587
HpyAV	CCTTC	2 cut(s)	150, 558
HpyCH4III	ACNGT	4 cut(s)	168, 220, 628, 746
HpyCH4V	TGCA	5 cut(s)	175, 609, 636, 773, 795
Hsp92II	CATG	2 cut(s)	142, 175
Ksp22I	TGATCA	2 cut(s)	292, 877
Kzo9I	GATC	2 cut(s)	292, 877
LmnI	GCTCC	2 cut(s)	499, 813
Lsp1109I	GCAGC	3 cut(s)	106, 187, 757
MaeI	CTAG	1 cut(s)	252
MaeIII	GTNAC	6 cut(s)	14, 468, 758, 847, 868, 926
MalI	GATC	2 cut(s)	294, 879
MboI	GATC	2 cut(s)	292, 877
MboII	GAAGA	3 cut(s)	305, 347, 837
MfeI	CAATTG	3 cut(s)	204, 459, 477
MhlI	GDGCHC	3 cut(s)	27, 309, 496
MluCI	AATT	9 cut(s)	31, 204, 319, 339, 445, 459, 477, 517, 932
MlyI	GAGTC	2 cut(s)	232, 498
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	6 cut(s)	136, 293, 295, 507, 580, 822
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	150
MspA1I	CMGCKG	2 cut(s)	842, 939
MspI	CCGG	4 cut(s)	90, 327, 418, 542
MspR9I	CCNGG	4 cut(s)	91, 454, 501, 567
MunI	CAATTG	3 cut(s)	204, 459, 477
MvaI	CCWGG	3 cut(s)	454, 501, 567
NciI	CCSGG	1 cut(s)	91
NdeII	GATC	2 cut(s)	292, 877
NlaIII	CATG	2 cut(s)	142, 175
NlaIV	GGNNCC	3 cut(s)	540, 546, 785
NmuCI	GTSAC	2 cut(s)	468, 847
OliI	CACNNNNGTG	1 cut(s)	150
PceI	AGGCCT	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	2 cut(s)	385, 579
PfeI	GAWTC	4 cut(s)	8, 38, 142, 193
PfoI	TCCNGGA	1 cut(s)	499
PinAI	ACCGGT	1 cut(s)	326
PkrI	GCNGC	3 cut(s)	96, 177, 772
PleI	GAGTC	2 cut(s)	231, 498
PpsI	GAGTC	2 cut(s)	231, 498
Psp6I	CCWGG	3 cut(s)	452, 499, 565
PspEI	GGTNACC	1 cut(s)	468
PspGI	CCWGG	3 cut(s)	452, 499, 565
PspN4I	GGNNCC	3 cut(s)	540, 546, 785
PspPI	GGNCC	3 cut(s)	209, 589, 784
PstI	CTGCAG	1 cut(s)	775
PstNI	CAGNNNCTG	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	939
RsaI	GTAC	2 cut(s)	425, 625
RsaNI	GTAC	2 cut(s)	424, 624
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	3 cut(s)	95, 176, 771
Sau3AI	GATC	2 cut(s)	292, 877
Sau96I	GGNCC	3 cut(s)	209, 589, 784
SchI	GAGTC	2 cut(s)	232, 498
ScrFI	CCNGG	4 cut(s)	91, 454, 501, 567
SduI	GDGCHC	3 cut(s)	27, 309, 496
SfcI	CTRYAG	2 cut(s)	430, 771
SinI	GGWCC	2 cut(s)	209, 784
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	2 cut(s)	148, 619
SmoI	CTYRAG	2 cut(s)	148, 619
Sse9I	AATT	9 cut(s)	31, 204, 319, 339, 445, 459, 477, 517, 932
SseBI	AGGCCT	1 cut(s)	366
SsiI	CCGC	1 cut(s)	840
SspI	AATATT	1 cut(s)	819
SspMI	CTAG	1 cut(s)	252
StuI	AGGCCT	1 cut(s)	366
StyD4I	CCNGG	4 cut(s)	89, 452, 499, 565
TaaI	ACNGT	4 cut(s)	168, 220, 628, 746
TaqI	TCGA	2 cut(s)	134, 582
TasI	AATT	9 cut(s)	31, 204, 319, 339, 445, 459, 477, 517, 932
TatI	WGTACW	1 cut(s)	423
TfiI	GAWTC	4 cut(s)	8, 38, 142, 193
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseFI	GTSAC	2 cut(s)	468, 847
TseI	GCWGC	3 cut(s)	94, 175, 770
Tsp45I	GTSAC	2 cut(s)	468, 847
TspDTI	ATGAA	4 cut(s)	155, 160, 568, 663
TspGWI	ACGGA	1 cut(s)	118
VpaK11BI	GGWCC	2 cut(s)	209, 784
XapI	RAATTY	2 cut(s)	517, 932
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.