Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004126.1

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Forward (+)

43096 .. 43656

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004126.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgcttgattcaggtaactttgtgctctacaattctgatttatacatcatttggcagacttttgatgttccaacagataccattatatccgggcagcgtctgttggctggatcaaagctcatctcctccgtctcgaacaagaatcactcaagtagaaggtttcaactgatcatgcagggagatggcaacctggttcagtatctaattggtccatttacagtgagtcctgatcaatatgcttattggaacactgagacattcacagcagggaacaatgtatccctcaatcttgatcaaaatgaggggctctatctacttcattccaccggtttcaagataagaagtttattttctcttcagaaaggcctttctatgtatcgtagctatcgtctaacgattgatgctgatggaatactctggttgtactcctatagtttgggtcagaatgattcctggtcaattgagtggtcaccacaaaatgttgatgactgtgctcctcctcgactctgtggcctaaattcttattgtgttcttggtgaacagcaaccttcttgtgtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

186

Amino Acids

20.98

Weight (kDa)

4.79

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	517
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	1 cut(s)	425
AgeI	ACCGGT	1 cut(s)	326
AgsI	TTSAA	2 cut(s)	164, 334
AjnI	CCWGG	2 cut(s)	189, 452
AloI	GAACNNNNNNTCC	2 cut(s)	263, 295
AluBI	AGCT	2 cut(s)	118, 384
AluI	AGCT	2 cut(s)	118, 384
Alw21I	GWGCWC	2 cut(s)	27, 496
Alw26I	GTCTC	2 cut(s)	136, 248
AlwI	GGATC	1 cut(s)	118
AlwNI	CAGNNNCTG	1 cut(s)	100
AoxI	GGCC	2 cut(s)	364, 511
ApeKI	GCWGC	1 cut(s)	94
ApoI	RAATTY	1 cut(s)	517
AsiGI	ACCGGT	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	209
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	2 cut(s)	462, 548
AvaII	GGWCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	2 cut(s)	27, 496
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	2 cut(s)	176, 401
BciT130I	CCWGG	2 cut(s)	191, 454
BciVI	GTATCC	1 cut(s)	289
BclI	TGATCA	3 cut(s)	168, 229, 292
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	2 cut(s)	136, 248
BfmI	CTRYAG	1 cut(s)	430
BfuI	GTATCC	1 cut(s)	289
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	3 cut(s)	91, 191, 454
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmrFI	CCNGG	3 cut(s)	91, 191, 454
BmsI	GCATC	1 cut(s)	391
BpuEI	CTTGAG	1 cut(s)	133
BpuMI	CCSGG	1 cut(s)	91
BsaWI	WCCGGW	1 cut(s)	326
Bse118I	RCCGGY	1 cut(s)	326
BseBI	CCWGG	2 cut(s)	191, 454
BseMII	CTCAG	1 cut(s)	243
BseRI	GAGGAG	3 cut(s)	115, 486, 489
BseXI	GCAGC	1 cut(s)	106
BshFI	GGCC	2 cut(s)	366, 513
BshTI	ACCGGT	1 cut(s)	326
BsiHKAI	GWGCWC	2 cut(s)	27, 496
BsiSI	CCGG	2 cut(s)	90, 327
BsmAI	GTCTC	2 cut(s)	136, 248
BsmBI	CGTCTC	1 cut(s)	136
BsnI	GGCC	2 cut(s)	366, 513
Bsp1286I	GDGCHC	3 cut(s)	27, 309, 496
Bsp143I	GATC	4 cut(s)	110, 168, 229, 292
BspANI	GGCC	2 cut(s)	366, 513
BspCNI	CTCAG	1 cut(s)	244
BspPI	GGATC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	326
BssMI	GATC	4 cut(s)	110, 168, 229, 292
Bst2UI	CCWGG	2 cut(s)	191, 454
Bst4CI	ACNGT	2 cut(s)	220, 491
Bst6I	CTCTTC	1 cut(s)	360
BstDEI	CTNAG	1 cut(s)	252
BstEII	GGTNACC	1 cut(s)	468
BstKTI	GATC	4 cut(s)	113, 171, 232, 295
BstMAI	GTCTC	2 cut(s)	136, 248
BstMBI	GATC	4 cut(s)	110, 168, 229, 292
BstNI	CCWGG	2 cut(s)	191, 454
BstPI	GGTNACC	1 cut(s)	468
BstSCI	CCNGG	3 cut(s)	89, 189, 452
BstSFI	CTRYAG	1 cut(s)	430
BstV1I	GCAGC	1 cut(s)	106
BsuI	GTATCC	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	366, 513
BtsIMutI	CAGTG	2 cut(s)	225, 249
CaiI	CAGNNNCTG	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	209
CseI	GACGC	1 cut(s)	86
CsiI	ACCWGGT	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	424
CspAI	ACCGGT	1 cut(s)	326
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	6 cut(s)	107, 118, 307, 366, 384, 513
CviKI_1	RGCY	6 cut(s)	107, 118, 307, 366, 384, 513
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	4 cut(s)	112, 170, 231, 294
DpnII	GATC	4 cut(s)	110, 168, 229, 292
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco147I	AGGCCT	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	341
Eco91I	GGTNACC	1 cut(s)	468
EcoO65I	GGTNACC	1 cut(s)	468
EcoRII	CCWGG	2 cut(s)	189, 452
EcoT38I	GRGCYC	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	1 cut(s)	175
FaiI	YATR	7 cut(s)	43, 86, 173, 237, 374, 432, 559
FatI	CATG	1 cut(s)	171
FbaI	TGATCA	3 cut(s)	168, 229, 292
Fnu4HI	GCNGC	1 cut(s)	95
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	1 cut(s)	95
GluI	GCNGC	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	366, 513
HapII	CCGG	2 cut(s)	90, 327
HgaI	GACGC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	175
HinfI	GANTC	5 cut(s)	8, 142, 223, 449, 504
HpaII	CCGG	2 cut(s)	90, 327
HphI	GGTGA	2 cut(s)	462, 548
Hpy166II	GTNNAC	1 cut(s)	539
Hpy188I	TCNGA	3 cut(s)	37, 360, 444
Hpy188III	TCNNGA	4 cut(s)	133, 227, 290, 334
Hpy8I	GTNNAC	1 cut(s)	539
HpyAV	CCTTC	2 cut(s)	150, 558
HpyCH4III	ACNGT	2 cut(s)	220, 491
HpyCH4V	TGCA	1 cut(s)	175
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	175
Ksp22I	TGATCA	3 cut(s)	168, 229, 292
Kzo9I	GATC	4 cut(s)	110, 168, 229, 292
LmnI	GCTCC	1 cut(s)	499
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	1 cut(s)	391
MabI	ACCWGGT	1 cut(s)	189
MaeIII	GTNAC	2 cut(s)	14, 468
MalI	GATC	4 cut(s)	112, 170, 231, 294
MboI	GATC	4 cut(s)	110, 168, 229, 292
MboII	GAAGA	1 cut(s)	347
MfeI	CAATTG	1 cut(s)	459
MhlI	GDGCHC	3 cut(s)	27, 309, 496
MluCI	AATT	4 cut(s)	31, 204, 459, 517
MlyI	GAGTC	2 cut(s)	232, 498
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	5 cut(s)	136, 293, 295, 507, 510
MspI	CCGG	2 cut(s)	90, 327
MspR9I	CCNGG	3 cut(s)	91, 191, 454
MunI	CAATTG	1 cut(s)	459
MvaI	CCWGG	2 cut(s)	191, 454
NciI	CCSGG	1 cut(s)	91
NdeII	GATC	4 cut(s)	110, 168, 229, 292
NlaIII	CATG	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	468
PceI	AGGCCT	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	1 cut(s)	385
PfeI	GAWTC	3 cut(s)	8, 142, 449
PinAI	ACCGGT	1 cut(s)	326
PkrI	GCNGC	1 cut(s)	96
PleI	GAGTC	2 cut(s)	231, 498
PpsI	GAGTC	2 cut(s)	231, 498
Psp6I	CCWGG	2 cut(s)	189, 452
PspEI	GGTNACC	1 cut(s)	468
PspGI	CCWGG	2 cut(s)	189, 452
PspPI	GGNCC	1 cut(s)	209
PstNI	CAGNNNCTG	1 cut(s)	100
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	4 cut(s)	110, 168, 229, 292
Sau96I	GGNCC	1 cut(s)	209
SchI	GAGTC	2 cut(s)	232, 498
ScrFI	CCNGG	3 cut(s)	91, 191, 454
SduI	GDGCHC	3 cut(s)	27, 309, 496
SetI	ASST	6 cut(s)	16, 120, 161, 192, 386, 550
SexAI	ACCWGGT	1 cut(s)	189
SfaNI	GCATC	1 cut(s)	391
SfcI	CTRYAG	1 cut(s)	430
SinI	GGWCC	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	4 cut(s)	31, 204, 459, 517
SseBI	AGGCCT	1 cut(s)	366
StuI	AGGCCT	1 cut(s)	366
StyD4I	CCNGG	3 cut(s)	89, 189, 452
TaaI	ACNGT	2 cut(s)	220, 491
TaqI	TCGA	2 cut(s)	134, 502
TasI	AATT	4 cut(s)	31, 204, 459, 517
TatI	WGTACW	1 cut(s)	423
TfiI	GAWTC	3 cut(s)	8, 142, 449
TscAI	CASTG	2 cut(s)	225, 256
TseFI	GTSAC	1 cut(s)	468
TseI	GCWGC	1 cut(s)	94
Tsp45I	GTSAC	1 cut(s)	468
TspDTI	ATGAA	1 cut(s)	308
TspGWI	ACGGA	1 cut(s)	118
TspRI	CASTG	2 cut(s)	225, 256
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.