Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Reverse (-)

36399383 .. 36405854

Gene Structure 6472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG219000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTTATCTTCTAATATCAGGCATCTGGTTCGAGAAAACCAATCCGAAAAGCCGAAAACAATCATCTGGACTGCAAATCGTGATGCTGTTAATCAAGAGCCACTACCTAATGATGTTCGATTGACTGTGAGGGACAGTGGAGTTGAGCTCATTTCAACAAGCAAGAATGCCTTCCTTATACCAATTTCAAATTCTTCCCAGCCTGCTGTCAGGGCCTCCACGCTTGATTCAGGTAACTTTCTGCTCTACAATTCTGATTTAAACATCATTTGGCAGACTTTTGATGTTCCAACAGATACCATTGTATCCGGGCAGCGTCTGTTGGCTGGAACAAAGCTCATCTCCTCCGTCTCAAACATGAATCACTCAAGTGGAAAGTTTCAACTGATCATGGAGGGAGATGGCAACCTGGTTCAGTATCCAATTGGTCCATTTACAGTGAGTCTTGATCAATATGCTTATTGGAACACTGAGACATTCACAGCAGGGAACAATGTATCCCTCAATCTTGATCAAAATGAGGGGCTCTATCTTCTTAATTCCACCGGTTTCAAGATAAAAAGTTTATTTTCTCTTCAGAAAGGCCTTTCTATGTATCGTAGCTATCGTCTGACGATTGATGCTGATGGAATACTCCGGTTGTACTCCTACAGTTTCGGTCAGAATGATTCTTGGTCAATTGAGTGGTCACCACCAAATGTTGATAAGTGTGCCCCTCCTGGACTCTGTGGCCTAAATTCTTATTGTGTTCTTGGGGAACCGGAACCTTCTTGTGTATGTCTCCCTGGTTTCGTTTTCATCGACGAGGGCCAAAGATATTTAGGCTGCAAGAGAAACTTGAGTACAGTTGGTTGCAGAGGTGAGAATGAAACTTCATATTCTATTGTTGATGTGGATAACATAGATTGGGAAAACACTCCATATTCTATCATTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

312

Amino Acids

34.62

Weight (kDa)

4.8

Isoelectric Point (pI)

31.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	20 - 108	5.4e-11	D-mannose binding lectin
S_locus_glycop	PF00954	197 - 265	9.6e-07	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	190, 736
AcuI	CTGAAG	1 cut(s)	560
AfaI	GTAC	2 cut(s)	644, 844
AgeI	ACCGGT	1 cut(s)	545
AgsI	TTSAA	4 cut(s)	156, 189, 383, 553
AjnI	CCWGG	3 cut(s)	408, 718, 784
AjuI	GAANNNNNNNTTGG	2 cut(s)	175, 207
AleI	CACNNNNGTG	1 cut(s)	369
AloI	GAACNNNNNNTCC	2 cut(s)	482, 514
AluBI	AGCT	3 cut(s)	148, 337, 603
AluI	AGCT	3 cut(s)	148, 337, 603
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	3 cut(s)	355, 467, 785
AlwNI	CAGNNNCTG	1 cut(s)	319
AoxI	GGCC	4 cut(s)	213, 583, 730, 808
ApeKI	GCWGC	2 cut(s)	313, 825
ApoI	RAATTY	2 cut(s)	190, 736
AsiGI	ACCGGT	1 cut(s)	545
Asp700I	GAANNNNTTC	1 cut(s)	170
AspS9I	GGNCC	3 cut(s)	213, 428, 808
AsuC2I	CCSGG	1 cut(s)	310
AsuHPI	GGTGA	2 cut(s)	681, 872
AvaII	GGWCC	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	715
BaeI	ACNNNNGTAYC	4 cut(s)	288, 288, 321, 321
BanII	GRGCYC	2 cut(s)	150, 528
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	325, 812
BccI	CCATC	2 cut(s)	395, 620
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BciT130I	CCWGG	3 cut(s)	410, 720, 786
BciVI	GTATCC	3 cut(s)	316, 429, 508
BclI	TGATCA	3 cut(s)	387, 448, 511
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	3 cut(s)	355, 467, 785
BfmI	CTRYAG	1 cut(s)	649
BfuI	GTATCC	3 cut(s)	316, 429, 508
BisI	GCNGC	2 cut(s)	314, 826
BlsI	GCNGC	2 cut(s)	315, 827
Bme1390I	CCNGG	4 cut(s)	310, 410, 720, 786
Bme18I	GGWCC	1 cut(s)	428
BmgT120I	GGNCC	3 cut(s)	213, 428, 808
BmiI	GGNNCC	2 cut(s)	759, 765
BmrFI	CCNGG	4 cut(s)	310, 410, 720, 786
BmsI	GCATC	3 cut(s)	31, 73, 610
BplI	GAGNNNNNCTC	2 cut(s)	132, 164
BpuEI	CTTGAG	2 cut(s)	352, 859
BpuMI	CCSGG	1 cut(s)	310
BsaJI	CCNNGG	1 cut(s)	784
BsaWI	WCCGGW	3 cut(s)	545, 636, 760
Bse118I	RCCGGY	1 cut(s)	545
BseBI	CCWGG	3 cut(s)	410, 720, 786
BseDI	CCNNGG	1 cut(s)	784
BseMII	CTCAG	1 cut(s)	462
BseRI	GAGGAG	1 cut(s)	334
BseSI	GKGCMC	1 cut(s)	715
BseXI	GCAGC	2 cut(s)	325, 812
BseYI	CCCAGC	1 cut(s)	198
BshFI	GGCC	4 cut(s)	215, 585, 732, 810
BshTI	ACCGGT	1 cut(s)	545
BsiHKAI	GWGCWC	1 cut(s)	150
BsiSI	CCGG	4 cut(s)	309, 546, 637, 761
BslFI	GGGAC	1 cut(s)	146
BsmAI	GTCTC	3 cut(s)	355, 467, 785
BsmBI	CGTCTC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	4 cut(s)	215, 585, 732, 810
Bsp1286I	GDGCHC	3 cut(s)	150, 528, 715
Bsp143I	GATC	3 cut(s)	387, 448, 511
BspANI	GGCC	4 cut(s)	215, 585, 732, 810
BspCNI	CTCAG	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	759, 765
BsrFI	RCCGGY	1 cut(s)	545
BssAI	RCCGGY	1 cut(s)	545
BssECI	CCNNGG	1 cut(s)	784
BssMI	GATC	3 cut(s)	387, 448, 511
Bst2UI	CCWGG	3 cut(s)	410, 720, 786
Bst4CI	ACNGT	5 cut(s)	127, 137, 439, 653, 847
Bst6I	CTCTTC	1 cut(s)	579
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	471
BstEII	GGTNACC	1 cut(s)	687
BstKTI	GATC	3 cut(s)	390, 451, 514
BstMAI	GTCTC	3 cut(s)	355, 467, 785
BstMBI	GATC	3 cut(s)	387, 448, 511
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	3 cut(s)	410, 720, 786
BstPI	GGTNACC	1 cut(s)	687
BstSCI	CCNGG	4 cut(s)	308, 408, 718, 784
BstSFI	CTRYAG	1 cut(s)	649
BstSLI	GKGCMC	1 cut(s)	715
BstV1I	GCAGC	2 cut(s)	325, 812
BsuI	GTATCC	3 cut(s)	316, 429, 508
BsuRI	GGCC	4 cut(s)	215, 585, 732, 810
BtsIMutI	CAGTG	3 cut(s)	142, 444, 468
Cac8I	GCNNGC	1 cut(s)	204
CaiI	CAGNNNCTG	1 cut(s)	319
Cfr10I	RCCGGY	1 cut(s)	545
Cfr13I	GGNCC	3 cut(s)	213, 428, 808
CseI	GACGC	1 cut(s)	305
CsiI	ACCWGGT	1 cut(s)	408
Csp6I	GTAC	2 cut(s)	643, 843
CspAI	ACCGGT	1 cut(s)	545
CviAII	CATG	2 cut(s)	358, 391
CviQI	GTAC	2 cut(s)	643, 843
DdeI	CTNAG	1 cut(s)	471
DpnI	GATC	3 cut(s)	389, 450, 513
DpnII	GATC	3 cut(s)	387, 448, 511
DraI	TTTAAA	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
Ecl136II	GAGCTC	1 cut(s)	148
Eco147I	AGGCCT	1 cut(s)	585
Eco24I	GRGCYC	2 cut(s)	150, 528
Eco47I	GGWCC	1 cut(s)	428
Eco53kI	GAGCTC	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	560
Eco91I	GGTNACC	1 cut(s)	687
EcoICRI	GAGCTC	1 cut(s)	148
EcoO109I	RGGNCCY	1 cut(s)	213
EcoO65I	GGTNACC	1 cut(s)	687
EcoRII	CCWGG	3 cut(s)	408, 718, 784
EcoT38I	GRGCYC	2 cut(s)	150, 528
Esp3I	CGTCTC	1 cut(s)	355
FaeI	CATG	2 cut(s)	361, 394
FaiI	YATR	9 cut(s)	179, 359, 392, 456, 593, 778, 877, 902, 922
FalI	AAGNNNNNCTT	4 cut(s)	155, 187, 821, 853
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	2 cut(s)	357, 390
FbaI	TGATCA	3 cut(s)	387, 448, 511
Fnu4HI	GCNGC	2 cut(s)	314, 826
FriOI	GRGCYC	2 cut(s)	150, 528
Fsp4HI	GCNGC	2 cut(s)	314, 826
GluI	GCNGC	2 cut(s)	314, 826
GsaI	CCCAGC	1 cut(s)	202
HaeIII	GGCC	4 cut(s)	215, 585, 732, 810
HapII	CCGG	4 cut(s)	309, 546, 637, 761
HgaI	GACGC	1 cut(s)	305
Hin1II	CATG	2 cut(s)	361, 394
HinfI	GANTC	5 cut(s)	227, 361, 442, 668, 723
HpaII	CCGG	4 cut(s)	309, 546, 637, 761
HphI	GGTGA	2 cut(s)	681, 872
Hpy188I	TCNGA	5 cut(s)	46, 256, 579, 612, 663
Hpy188III	TCNNGA	7 cut(s)	32, 67, 80, 95, 446, 509, 553
Hpy99I	CGWCG	1 cut(s)	806
HpyAV	CCTTC	2 cut(s)	181, 777
HpyCH4III	ACNGT	5 cut(s)	127, 137, 439, 653, 847
HpyCH4V	TGCA	3 cut(s)	74, 828, 855
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	1 cut(s)	471
Hsp92II	CATG	2 cut(s)	361, 394
Ksp22I	TGATCA	3 cut(s)	387, 448, 511
Kzo9I	GATC	3 cut(s)	387, 448, 511
Lsp1109I	GCAGC	2 cut(s)	325, 812
LweI	GCATC	3 cut(s)	31, 73, 610
MabI	ACCWGGT	1 cut(s)	408
MaeIII	GTNAC	2 cut(s)	233, 687
MalI	GATC	3 cut(s)	389, 450, 513
MboI	GATC	3 cut(s)	387, 448, 511
MboII	GAAGA	3 cut(s)	186, 524, 566
MfeI	CAATTG	2 cut(s)	423, 678
MhlI	GDGCHC	3 cut(s)	150, 528, 715
MluCI	AATT	7 cut(s)	183, 190, 250, 423, 538, 678, 736
MlyI	GAGTC	2 cut(s)	451, 717
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	9 cut(s)	123, 226, 355, 388, 512, 514, 726, 799, 851
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	3 cut(s)	90, 260, 537
MslI	CAYNNNNRTG	1 cut(s)	369
MspI	CCGG	4 cut(s)	309, 546, 637, 761
MspR9I	CCNGG	4 cut(s)	310, 410, 720, 786
MunI	CAATTG	2 cut(s)	423, 678
Mva1269I	GAATGC	1 cut(s)	172
MvaI	CCWGG	3 cut(s)	410, 720, 786
MwoI	GCNNNNNNNGC	1 cut(s)	212
NciI	CCSGG	1 cut(s)	310
NdeII	GATC	3 cut(s)	387, 448, 511
NlaIII	CATG	2 cut(s)	361, 394
NlaIV	GGNNCC	2 cut(s)	759, 765
NmuCI	GTSAC	1 cut(s)	687
OliI	CACNNNNGTG	1 cut(s)	369
PceI	AGGCCT	1 cut(s)	585
PcsI	WCGNNNNNNNCGW	2 cut(s)	604, 798
PctI	GAATGC	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	3 cut(s)	227, 361, 668
PfoI	TCCNGGA	1 cut(s)	718
PinAI	ACCGGT	1 cut(s)	545
PkrI	GCNGC	2 cut(s)	315, 827
PleI	GAGTC	2 cut(s)	450, 717
PpsI	GAGTC	2 cut(s)	450, 717
Psp124BI	GAGCTC	1 cut(s)	150
Psp6I	CCWGG	3 cut(s)	408, 718, 784
PspEI	GGTNACC	1 cut(s)	687
PspFI	CCCAGC	1 cut(s)	198
PspGI	CCWGG	3 cut(s)	408, 718, 784
PspN4I	GGNNCC	2 cut(s)	759, 765
PspPI	GGNCC	3 cut(s)	213, 428, 808
PstNI	CAGNNNCTG	1 cut(s)	319
RsaI	GTAC	2 cut(s)	644, 844
RsaNI	GTAC	2 cut(s)	643, 843
RseI	CAYNNNNRTG	1 cut(s)	369
SacI	GAGCTC	1 cut(s)	150
SaqAI	TTAA	3 cut(s)	90, 260, 537
SatI	GCNGC	2 cut(s)	314, 826
Sau3AI	GATC	3 cut(s)	387, 448, 511
Sau96I	GGNCC	3 cut(s)	213, 428, 808
SchI	GAGTC	2 cut(s)	451, 717
ScrFI	CCNGG	4 cut(s)	310, 410, 720, 786
SduI	GDGCHC	3 cut(s)	150, 528, 715
SetI	ASST	8 cut(s)	109, 150, 235, 339, 411, 605, 769, 862
SexAI	ACCWGGT	1 cut(s)	408
SfaNI	GCATC	3 cut(s)	31, 73, 610
SfcI	CTRYAG	1 cut(s)	649
SinI	GGWCC	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	2 cut(s)	367, 838
SmoI	CTYRAG	2 cut(s)	367, 838
Sse9I	AATT	7 cut(s)	183, 190, 250, 423, 538, 678, 736
SseBI	AGGCCT	1 cut(s)	585
SstI	GAGCTC	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	585
StyD4I	CCNGG	4 cut(s)	308, 408, 718, 784
TaaI	ACNGT	5 cut(s)	127, 137, 439, 653, 847
TaqI	TCGA	3 cut(s)	31, 118, 801
TaqII	GACCGA	1 cut(s)	647
TasI	AATT	7 cut(s)	183, 190, 250, 423, 538, 678, 736
TatI	WGTACW	2 cut(s)	642, 842
TfiI	GAWTC	3 cut(s)	227, 361, 668
Tru1I	TTAA	3 cut(s)	90, 260, 537
Tru9I	TTAA	3 cut(s)	90, 260, 537
TscAI	CASTG	3 cut(s)	142, 444, 475
TseFI	GTSAC	1 cut(s)	687
TseI	GCWGC	2 cut(s)	313, 825
Tsp45I	GTSAC	1 cut(s)	687
TspDTI	ATGAA	4 cut(s)	374, 787, 864, 882
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	3 cut(s)	142, 444, 475
VpaK11BI	GGWCC	1 cut(s)	428
XapI	RAATTY	2 cut(s)	190, 736
XmnI	GAANNNNTTC	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.