Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004126.1

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Forward (+)

43888 .. 44787

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004126.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atggattgtgactttgaagctgcgatattgagggatcagcagtgcagaaaacaaaagctccctctaagatttggaagaactcgcccaaccaacatggcggtgacaacctttgtcaaaaaggagactactgatgagagctccattacaaaaagggggagcaagggaagaaaaaatgtcgaccgagtcatatttattagcatcattgcaactttaactttttcacttattattatggcaattactggtgttgttatatatagatatcgtgtttgggattaccgaaaggttaccaatccagctggtgaagagttaattgaaggtgttacattgcggtcatatacatattgtgaacttgaaaaggcaaccaaaggcttcaccaatcaattagtgggaaaaggaacttttgggaccgtttttaaaggagtgattggtgggagagaagtggcaatcaagcaactagagacagtggtggatgaagaagagcgagagtttcgcaatgagatgaatgcaattgggagaactcatcacaagaatctagtgaaattgcttaactactgtcatgatggaacaaataggcttctggtctatgagtacatgactaacgtctcacttgcgaaatactttttcaattcttgtggtggaaggccaacttgggaggaaagagtcagtgtagccctcaatgtagctcaaggtatactatatctacatgaagtgtgtgagacacaaatcattcattgtgacatcaaaccagaaaatatatttatgagtgagcagaaatgtgcaaagcttgctgattttggattagccaagctgttgaaagccgaccaatcaaggacatatactatctttaaaggaaccaggggttacgttgcactgagtggcacaagaacatgtcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

299

Amino Acids

34.02

Weight (kDa)

9.19

Isoelectric Point (pI)

24.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	177, 694
AciI	CCGC	2 cut(s)	98, 331
AclWI	GGATC	1 cut(s)	42
AdeI	CACNNNGTG	1 cut(s)	878
AfaI	GTAC	1 cut(s)	593
AflIII	ACRYGT	1 cut(s)	890
AgsI	TTSAA	5 cut(s)	17, 317, 356, 628, 817
AjnI	CCWGG	1 cut(s)	857
AjuI	GAANNNNNNNTTGG	2 cut(s)	634, 666
AluBI	AGCT	7 cut(s)	20, 58, 138, 299, 686, 787, 811
AluI	AGCT	7 cut(s)	20, 58, 138, 299, 686, 787, 811
Alw21I	GWGCWC	1 cut(s)	140
Alw26I	GTCTC	4 cut(s)	116, 455, 610, 713
AlwI	GGATC	1 cut(s)	42
AoxI	GGCC	1 cut(s)	644
ApeKI	GCWGC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	408
AsuHPI	GGTGA	3 cut(s)	112, 314, 367
AvaII	GGWCC	1 cut(s)	408
BanII	GRGCYC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	1 cut(s)	557
BciT130I	CCWGG	1 cut(s)	859
BcoDI	GTCTC	4 cut(s)	116, 455, 610, 713
BfaI	CTAG	2 cut(s)	458, 536
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	1 cut(s)	859
Bme18I	GGWCC	1 cut(s)	408
BmgT120I	GGNCC	1 cut(s)	408
BmiI	GGNNCC	2 cut(s)	409, 856
BmrFI	CCNGG	1 cut(s)	859
BmsI	GCATC	1 cut(s)	207
BoxI	GACNNNNGTC	1 cut(s)	602
BpuEI	CTTGAG	1 cut(s)	672
BsaJI	CCNNGG	1 cut(s)	858
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bse1I	ACTGG	1 cut(s)	247
Bse3DI	GCAATG	3 cut(s)	201, 326, 502
BseBI	CCWGG	1 cut(s)	859
BseDI	CCNNGG	1 cut(s)	858
BseGI	GGATG	1 cut(s)	478
BseMI	GCAATG	3 cut(s)	201, 326, 502
BseMII	CTCAG	1 cut(s)	866
BseNI	ACTGG	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	7
BsgI	GTGCAG	1 cut(s)	64
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	1 cut(s)	646
BsiEI	CGRYCG	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	421
BsmAI	GTCTC	4 cut(s)	116, 455, 610, 713
BsmBI	CGTCTC	1 cut(s)	610
BsmFI	GGGAC	1 cut(s)	421
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	1 cut(s)	646
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	2 cut(s)	98, 331
BspANI	GGCC	1 cut(s)	646
BspCNI	CTCAG	1 cut(s)	867
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	2 cut(s)	409, 856
BspPI	GGATC	1 cut(s)	42
BspQI	GCTCTTC	1 cut(s)	474
BsrDI	GCAATG	3 cut(s)	201, 326, 502
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	858
BssMI	GATC	1 cut(s)	34
BssNAI	GTATAC	1 cut(s)	695
Bst1107I	GTATAC	1 cut(s)	695
Bst2UI	CCWGG	1 cut(s)	859
Bst4CI	ACNGT	3 cut(s)	412, 466, 557
Bst6I	CTCTTC	2 cut(s)	300, 474
BstAPI	GCANNNNNTGC	1 cut(s)	788
BstC8I	GCNNGC	1 cut(s)	789
BstDEI	CTNAG	2 cut(s)	65, 875
BstEII	GGTNACC	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	478
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	4 cut(s)	116, 455, 610, 713
BstMBI	GATC	1 cut(s)	34
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	788
BstNI	CCWGG	1 cut(s)	859
BstNSI	RCATGY	1 cut(s)	894
BstPAI	GACNNNNGTC	1 cut(s)	602
BstPI	GGTNACC	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	857
BstV1I	GCAGC	1 cut(s)	7
BstZ17I	GTATAC	1 cut(s)	695
BsuRI	GGCC	1 cut(s)	646
BtsCI	GGATG	1 cut(s)	478
BtsI	GCAGTG	1 cut(s)	47
BtsIMutI	CAGTG	4 cut(s)	47, 471, 673, 872
Cac8I	GCNNGC	1 cut(s)	789
CciI	TCATGA	1 cut(s)	559
Cfr13I	GGNCC	1 cut(s)	408
Csp6I	GTAC	1 cut(s)	592
CspCI	CAANNNNNGTGG	2 cut(s)	616, 651
CviAII	CATG	5 cut(s)	94, 560, 595, 707, 891
CviQI	GTAC	1 cut(s)	592
DdeI	CTNAG	2 cut(s)	65, 875
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
DraI	TTTAAA	2 cut(s)	418, 850
DraIII	CACNNNGTG	1 cut(s)	878
Eam1104I	CTCTTC	2 cut(s)	300, 474
EarI	CTCTTC	2 cut(s)	300, 474
Ecl136II	GAGCTC	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	140
Eco32I	GATATC	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	408
Eco53kI	GAGCTC	1 cut(s)	138
Eco91I	GGTNACC	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	138
EcoO65I	GGTNACC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	857
EcoRV	GATATC	1 cut(s)	263
EcoT38I	GRGCYC	1 cut(s)	140
Esp3I	CGTCTC	1 cut(s)	610
FaeI	CATG	5 cut(s)	97, 563, 598, 710, 894
FalI	AAGNNNNNCTT	2 cut(s)	634, 666
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	5 cut(s)	93, 559, 594, 706, 890
FblI	GTMKAC	2 cut(s)	177, 694
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	1 cut(s)	485
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	2 cut(s)	458, 536
GluI	GCNGC	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	646
Hin1II	CATG	5 cut(s)	97, 563, 598, 710, 894
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	785
HinfI	GANTC	3 cut(s)	183, 532, 663
HphI	GGTGA	3 cut(s)	112, 314, 367
Hpy166II	GTNNAC	3 cut(s)	178, 350, 695
Hpy188III	TCNNGA	1 cut(s)	560
Hpy8I	GTNNAC	3 cut(s)	178, 350, 695
HpyAV	CCTTC	2 cut(s)	311, 636
HpyCH4III	ACNGT	3 cut(s)	412, 466, 557
HpyCH4IV	ACGT	2 cut(s)	603, 867
HpyCH4V	TGCA	5 cut(s)	45, 206, 509, 782, 872
HpyF10VI	GCNNNNNNNGC	1 cut(s)	788
HpyF3I	CTNAG	2 cut(s)	65, 875
HpySE526I	ACGT	2 cut(s)	603, 867
Hsp92II	CATG	5 cut(s)	97, 563, 598, 710, 894
Kzo9I	GATC	1 cut(s)	34
LguI	GCTCTTC	1 cut(s)	474
LmnI	GCTCC	3 cut(s)	63, 143, 156
LpnPI	CCDG	7 cut(s)	228, 285, 309, 566, 762, 844, 871
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	2 cut(s)	458, 536
MaeII	ACGT	2 cut(s)	603, 867
MaeIII	GTNAC	6 cut(s)	8, 100, 286, 322, 737, 863
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	5 cut(s)	87, 177, 317, 488, 491
MfeI	CAATTG	1 cut(s)	510
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	6 cut(s)	237, 312, 383, 510, 542, 628
MlyI	GAGTC	2 cut(s)	192, 672
MnlI	CCTC	4 cut(s)	24, 72, 649, 686
MseI	TTAA	5 cut(s)	212, 311, 417, 549, 849
MslI	CAYNNNNRTG	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	299
MspR9I	CCNGG	1 cut(s)	859
MunI	CAATTG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	859
MwoI	GCNNNNNNNGC	1 cut(s)	788
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	5 cut(s)	97, 563, 598, 710, 894
NlaIV	GGNNCC	2 cut(s)	409, 856
NmuCI	GTSAC	3 cut(s)	8, 100, 737
NspI	RCATGY	1 cut(s)	894
PagI	TCATGA	1 cut(s)	559
PciI	ACATGT	1 cut(s)	890
PciSI	GCTCTTC	1 cut(s)	474
PctI	GAATGC	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	532
PflFI	GACNNNGTC	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	2 cut(s)	191, 671
PpsI	GAGTC	2 cut(s)	191, 671
PscI	ACATGT	1 cut(s)	890
PshAI	GACNNNNGTC	1 cut(s)	602
Psp124BI	GAGCTC	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	857
PspEI	GGTNACC	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	857
PspN4I	GGNNCC	2 cut(s)	409, 856
PspPI	GGNCC	1 cut(s)	408
PsyI	GACNNNGTC	1 cut(s)	182
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	1 cut(s)	593
RsaNI	GTAC	1 cut(s)	592
RseI	CAYNNNNRTG	1 cut(s)	98
SacI	GAGCTC	1 cut(s)	140
SalI	GTCGAC	1 cut(s)	176
SapI	GCTCTTC	1 cut(s)	474
SaqAI	TTAA	5 cut(s)	212, 311, 417, 549, 849
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	1 cut(s)	408
SchI	GAGTC	2 cut(s)	192, 672
ScrFI	CCNGG	1 cut(s)	859
SduI	GDGCHC	1 cut(s)	140
SfaNI	GCATC	1 cut(s)	207
SinI	GGWCC	1 cut(s)	408
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	687
SmoI	CTYRAG	1 cut(s)	687
Sse9I	AATT	6 cut(s)	237, 312, 383, 510, 542, 628
SsiI	CCGC	2 cut(s)	98, 331
SspMI	CTAG	2 cut(s)	458, 536
SstI	GAGCTC	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	857
TaaI	ACNGT	3 cut(s)	412, 466, 557
TaiI	ACGT	2 cut(s)	606, 870
TaqI	TCGA	1 cut(s)	177
TaqII	GACCGA	1 cut(s)	195
TasI	AATT	6 cut(s)	237, 312, 383, 510, 542, 628
TatI	WGTACW	1 cut(s)	591
TfiI	GAWTC	1 cut(s)	532
Tru1I	TTAA	5 cut(s)	212, 311, 417, 549, 849
Tru9I	TTAA	5 cut(s)	212, 311, 417, 549, 849
TscAI	CASTG	4 cut(s)	47, 471, 673, 879
TseFI	GTSAC	3 cut(s)	8, 100, 737
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	3 cut(s)	8, 100, 737
TspDTI	ATGAA	4 cut(s)	489, 518, 722, 723
TspRI	CASTG	4 cut(s)	47, 471, 673, 879
Tth111I	GACNNNGTC	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	408
XceI	RCATGY	1 cut(s)	894
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XmiI	GTMKAC	2 cut(s)	177, 694
XspI	CTAG	2 cut(s)	458, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.