Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Reverse (-)

37069769 .. 37078334

Gene Structure 8566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG208400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGCCTTCCTTATACCAATTTCAAATTCTTCCCAGCCTGCTGTCAGGGCCTCCATGCTTGATTCAGACTTTTGATGTTCCAACAAATACCATTGTATCCGGGCAGCGTCTGTTGGCTGGAATAAAGCTCATCTCCTCCGTCTCAAACACGAATCACTCAAGTGGAAAATGGGTTGGGTACAAAAGAAGATTTCCGGCAGGTCTGCTGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

70

Amino Acids

7.67

Weight (kDa)

10.55

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	24
AfaI	GTAC	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	23
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AleI	CACNNNNGTG	1 cut(s)	159
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	145
AlwNI	CAGNNNCTG	1 cut(s)	109
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	2 cut(s)	103, 205
ApoI	RAATTY	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	47
AsuC2I	CCSGG	1 cut(s)	100
BaeI	ACNNNNGTAYC	2 cut(s)	78, 111
BbvI	GCAGC	2 cut(s)	115, 192
BciVI	GTATCC	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	145
BfuAI	ACCTGC	1 cut(s)	188
BfuI	GTATCC	1 cut(s)	106
BisI	GCNGC	2 cut(s)	104, 206
BlsI	GCNGC	2 cut(s)	105, 207
Bme1390I	CCNGG	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	100
BpuEI	CTTGAG	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	124
BseXI	GCAGC	2 cut(s)	115, 192
BseYI	CCCAGC	1 cut(s)	32
BshFI	GGCC	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	99, 194
BsmAI	GTCTC	1 cut(s)	145
BsmBI	CGTCTC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	49
BspMI	ACCTGC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	38
BstMAI	GTCTC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	98
BstV1I	GCAGC	2 cut(s)	115, 192
BsuI	GTATCC	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	49
BveI	ACCTGC	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	38
CaiI	CAGNNNCTG	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	47
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	1 cut(s)	54
CviJI	RGCY	4 cut(s)	36, 49, 116, 127
CviKI_1	RGCY	4 cut(s)	36, 49, 116, 127
CviQI	GTAC	1 cut(s)	178
EcoO109I	RGGNCCY	1 cut(s)	47
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	1 cut(s)	57
FaiI	YATR	2 cut(s)	13, 55
FatI	CATG	1 cut(s)	53
Fnu4HI	GCNGC	2 cut(s)	104, 206
Fsp4HI	GCNGC	2 cut(s)	104, 206
GluI	GCNGC	2 cut(s)	104, 206
GsaI	CCCAGC	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	2 cut(s)	99, 194
HgaI	GACGC	1 cut(s)	95
Hin1II	CATG	1 cut(s)	57
HinfI	GANTC	2 cut(s)	61, 151
HpaII	CCGG	2 cut(s)	99, 194
Hpy188I	TCNGA	1 cut(s)	66
HpyAV	CCTTC	1 cut(s)	15
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
Hsp92II	CATG	1 cut(s)	57
LpnPI	CCDG	7 cut(s)	30, 46, 50, 102, 112, 183, 207
Lsp1109I	GCAGC	2 cut(s)	115, 192
MboII	GAAGA	2 cut(s)	20, 198
MluCI	AATT	2 cut(s)	17, 24
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	2 cut(s)	60, 145
MslI	CAYNNNNRTG	1 cut(s)	159
MspI	CCGG	2 cut(s)	99, 194
MspR9I	CCNGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	1 cut(s)	46
NciI	CCSGG	1 cut(s)	100
NlaIII	CATG	1 cut(s)	57
OliI	CACNNNNGTG	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	61, 151
PkrI	GCNGC	2 cut(s)	105, 207
PspFI	CCCAGC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	47
PstNI	CAGNNNCTG	1 cut(s)	109
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	159
SatI	GCNGC	2 cut(s)	104, 206
Sau96I	GGNCC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	100
SetI	ASST	2 cut(s)	129, 202
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	157
SmoI	CTYRAG	1 cut(s)	157
Sse9I	AATT	2 cut(s)	17, 24
StyD4I	CCNGG	1 cut(s)	98
TasI	AATT	2 cut(s)	17, 24
TfiI	GAWTC	2 cut(s)	61, 151
TseI	GCWGC	2 cut(s)	103, 205
TspGWI	ACGGA	1 cut(s)	127
XapI	RAATTY	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.