Rh6CG219100

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
36406750 .. 36409273
2524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG219100.1

Sequence Viewer

Length: 1284 bp
ATGGTAGGTAATGCGACGTCAAGTACTGGGCAAGGAAATGATCTTGCTGTTGGCATCTGGTTCGAGAAAACCAATCCGAAAACAATCATCTGGACAGCAAATCGTGATGCTGTTAAACAAGAGCCACTTCCTAATGATGTTCGATTGACTGTGAGGGAAAGTGGAGTTGAGCTCATTTCAACAAGCAAGAATCCCTTCCTTATACCAATTTCAAATTCTTCCCAGCCTGCTGTCAGGGCCTCCATACTTGATTCAGGTAACTTTGTCCTCTACAATTCTGATTCAAACATCATTTGGCAGACTTTTGATGTTCCAACAGATACCATTGTATCCGGGCAGAGTCTGTTGGCTGGAAAAATGCTCATCTCCTCCGTCTCGAACACGAATCACTCAAGTGGAAGGTTTCAACTGATCATGCAGACAGATGGCAACCTGGTTCAGTATCCAATTGGTCCATTGACAGTGAGTGCTGATCAATATGCTTATTGGAACACTGGGACATTCACAGCAGGGAACAATGTGTCCCTCAATCTTGATCAAAATGAGGGGCTCTATCTTCTTAATTCCACCGGTTTCAAGATAGAAAGTTTATTTTCTCTTCAGAAAGGCCTTTCTATGTATCGTAGCTATCGTCTGACGATTGATGCTGATGGAATACTCCGGTTGTACTCCTATAGTTTGGGTCAGAAAGATTCCTGGTCAATTGAGTGGTTACCACCAAATGTTGATAGGTGTGCTCCTCCTGGACTCTGTGGCCTAAATTCTTATTGTGTTCTTGGGAAACCGGAACCTTCTTGTGTATGTCTCCCTGGTTTCGTTTTCATCGACGAGGGCCAAAGATATTTAGGCTGCAAGAGAAACTTGAGTACAGTTGGTTGCAAAGGTGAGAATGAAACTTCATATTCTATTGTTGATGTCGATAACATAAATTGGGAAAGCACTCCATACTCTGTTCTATCATTGGATAAGACTGCTTGTAAAGAGGACTGTTTGATGGATCGTAACTGTGAAGCTGCGATATTTACGGACCAGCAGTGCAGAAAACAAAAGCTCCCTCTAAGATTTGGAAGAACTCCCCAACGCGCTGTGGTGACAACCTTTGTCAAAAAGGGTACTACTGATGAGAGTTCAGGTGCAAAATGGTTGAGCAAGGGAAGAAAAAATGTTGACAGAGAGGAGCCATCATTGCGCCCTTCGATGAAGAAGGTGGTACTAATGCTGGAAGGGATTCTGGAGATACCATCACCTCCGATCCAAATTCTTTCAGTTCCAGACATTGACTAA

Protein Analysis

427

Amino Acids

47.07

Weight (kDa)

5.54

Isoelectric Point (pI)

34.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 28 - 116 1.9e-12 D-mannose binding lectin
S_locus_glycop PF00954 197 - 273 4.3e-06 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 20
AccII CGCG 1 cut(s) 1083
AclWI GGATC 2 cut(s) 1005, 1246
AcsI RAATTY 3 cut(s) 214, 760, 1257
AcuI CTGAAG 1 cut(s) 584
AcyI GRCGYC 1 cut(s) 17
AfaI GTAC 5 cut(s) 25, 668, 868, 1114, 1212
AgeI ACCGGT 1 cut(s) 569
AgsI TTSAA 5 cut(s) 180, 213, 285, 407, 577
AjnI CCWGG 4 cut(s) 432, 695, 742, 808
AjuI GAANNNNNNNTTGG 2 cut(s) 199, 231
AleI CACNNNNGTG 1 cut(s) 393
AloI GAACNNNNNNTCC 2 cut(s) 506, 538
AluBI AGCT 4 cut(s) 172, 627, 1013, 1051
AluI AGCT 4 cut(s) 172, 627, 1013, 1051
Alw21I GWGCWC 2 cut(s) 174, 739
Alw26I GTCTC 2 cut(s) 379, 809
AlwI GGATC 2 cut(s) 1005, 1246
AlwNI CAGNNNCTG 1 cut(s) 343
AoxI GGCC 4 cut(s) 237, 607, 754, 832
ApeKI GCWGC 2 cut(s) 849, 1013
ApoI RAATTY 3 cut(s) 214, 760, 1257
AsiGI ACCGGT 1 cut(s) 569
Asp700I GAANNNNTTC 2 cut(s) 194, 1227
AspLEI GCGC 2 cut(s) 1085, 1191
AspS9I GGNCC 4 cut(s) 237, 452, 832, 1027
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 3 cut(s) 896, 1102, 1236
AvaII GGWCC 2 cut(s) 452, 1027
BaeI ACNNNNGTAYC 4 cut(s) 312, 312, 345, 345
BanII GRGCYC 2 cut(s) 174, 552
Bbv12I GWGCWC 2 cut(s) 174, 739
BbvI GCAGC 2 cut(s) 836, 1000
BccI CCATC 5 cut(s) 419, 644, 988, 1189, 1249
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BciT130I CCWGG 4 cut(s) 434, 697, 744, 810
BciVI GTATCC 2 cut(s) 340, 453
BclI TGATCA 3 cut(s) 411, 472, 535
BcnI CCSGG 1 cut(s) 334
BcoDI GTCTC 2 cut(s) 379, 809
BfmI CTRYAG 1 cut(s) 673
BfuI GTATCC 2 cut(s) 340, 453
BisI GCNGC 2 cut(s) 850, 1014
BlsI GCNGC 2 cut(s) 851, 1015
BmcAI AGTACT 1 cut(s) 25
Bme1390I CCNGG 5 cut(s) 334, 434, 697, 744, 810
Bme18I GGWCC 2 cut(s) 452, 1027
BmgT120I GGNCC 4 cut(s) 237, 452, 832, 1027
BmiI GGNNCC 2 cut(s) 789, 1179
BmrFI CCNGG 5 cut(s) 334, 434, 697, 744, 810
BmrI ACTGGG 2 cut(s) 36, 504
BmsI GCATC 3 cut(s) 63, 97, 634
BmuI ACTGGG 2 cut(s) 36, 504
BplI GAGNNNNNCTC 2 cut(s) 156, 188
BpmI CTGGAG 1 cut(s) 1253
BpuEI CTTGAG 2 cut(s) 376, 883
BpuMI CCSGG 1 cut(s) 334
BsaHI GRCGYC 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 808
BsaWI WCCGGW 3 cut(s) 569, 660, 784
BsaXI ACNNNNNCTCC 2 cut(s) 1035, 1065
Bse118I RCCGGY 1 cut(s) 569
Bse1I ACTGG 2 cut(s) 31, 499
Bse3DI GCAATG 1 cut(s) 1184
BseBI CCWGG 4 cut(s) 434, 697, 744, 810
BseDI CCNNGG 1 cut(s) 808
BseMI GCAATG 1 cut(s) 1184
BseNI ACTGG 2 cut(s) 31, 499
BseRI GAGGAG 3 cut(s) 358, 729, 1190
BseXI GCAGC 2 cut(s) 836, 1000
BseYI CCCAGC 1 cut(s) 222
BsgI GTGCAG 1 cut(s) 1057
Bsh1236I CGCG 1 cut(s) 1083
BshFI GGCC 4 cut(s) 239, 609, 756, 834
BshTI ACCGGT 1 cut(s) 569
BsiHKAI GWGCWC 2 cut(s) 174, 739
BsiSI CCGG 4 cut(s) 333, 570, 661, 785
BslFI GGGAC 2 cut(s) 508, 511
BsmAI GTCTC 2 cut(s) 379, 809
BsmBI CGTCTC 1 cut(s) 379
BsmFI GGGAC 2 cut(s) 508, 511
BsnI GGCC 4 cut(s) 239, 609, 756, 834
Bsp1286I GDGCHC 3 cut(s) 174, 552, 739
Bsp143I GATC 6 cut(s) 40, 411, 472, 535, 997, 1251
BspANI GGCC 4 cut(s) 239, 609, 756, 834
BspFNI CGCG 1 cut(s) 1083
BspLI GGNNCC 2 cut(s) 789, 1179
BspPI GGATC 2 cut(s) 1005, 1246
BsrDI GCAATG 1 cut(s) 1184
BsrFI RCCGGY 1 cut(s) 569
BsrI ACTGG 2 cut(s) 31, 499
BssAI RCCGGY 1 cut(s) 569
BssECI CCNNGG 1 cut(s) 808
BssMI GATC 6 cut(s) 40, 411, 472, 535, 997, 1251
BssNI GRCGYC 1 cut(s) 17
Bst2UI CCWGG 4 cut(s) 434, 697, 744, 810
Bst4CI ACNGT 5 cut(s) 151, 463, 871, 989, 1007
Bst6I CTCTTC 1 cut(s) 603
BstACI GRCGYC 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 1058
BstEII GGTNACC 1 cut(s) 711
BstFNI CGCG 1 cut(s) 1083
BstHHI GCGC 2 cut(s) 1085, 1191
BstKTI GATC 6 cut(s) 43, 414, 475, 538, 1000, 1254
BstMAI GTCTC 2 cut(s) 379, 809
BstMBI GATC 6 cut(s) 40, 411, 472, 535, 997, 1251
BstMWI GCNNNNNNNGC 2 cut(s) 236, 1186
BstNI CCWGG 4 cut(s) 434, 697, 744, 810
BstPI GGTNACC 1 cut(s) 711
BstSCI CCNGG 5 cut(s) 332, 432, 695, 742, 808
BstSFI CTRYAG 1 cut(s) 673
BstUI CGCG 1 cut(s) 1083
BstV1I GCAGC 2 cut(s) 836, 1000
BsuI GTATCC 2 cut(s) 340, 453
BsuRI GGCC 4 cut(s) 239, 609, 756, 834
BtsI GCAGTG 1 cut(s) 1040
BtsIMutI CAGTG 3 cut(s) 468, 492, 1040
Cac8I GCNNGC 1 cut(s) 228
CaiI CAGNNNCTG 1 cut(s) 343
CfoI GCGC 2 cut(s) 1085, 1191
Cfr10I RCCGGY 1 cut(s) 569
Cfr13I GGNCC 4 cut(s) 237, 452, 832, 1027
CsiI ACCWGGT 1 cut(s) 432
Csp6I GTAC 5 cut(s) 24, 667, 867, 1113, 1211
CspAI ACCGGT 1 cut(s) 569
CviAII CATG 1 cut(s) 415
CviQI GTAC 5 cut(s) 24, 667, 867, 1113, 1211
DdeI CTNAG 1 cut(s) 1058
DpnI GATC 6 cut(s) 42, 413, 474, 537, 999, 1253
DpnII GATC 6 cut(s) 40, 411, 472, 535, 997, 1251
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
Ecl136II GAGCTC 1 cut(s) 172
Eco147I AGGCCT 1 cut(s) 609
Eco24I GRGCYC 2 cut(s) 174, 552
Eco47I GGWCC 2 cut(s) 452, 1027
Eco53kI GAGCTC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 584
Eco91I GGTNACC 1 cut(s) 711
EcoICRI GAGCTC 1 cut(s) 172
EcoO109I RGGNCCY 1 cut(s) 237
EcoO65I GGTNACC 1 cut(s) 711
EcoRII CCWGG 4 cut(s) 432, 695, 742, 808
EcoT38I GRGCYC 2 cut(s) 174, 552
Esp3I CGTCTC 1 cut(s) 379
FaeI CATG 1 cut(s) 418
FalI AAGNNNNNCTT 6 cut(s) 111, 143, 179, 211, 845, 877
FaqI GGGAC 2 cut(s) 508, 511
FatI CATG 1 cut(s) 414
FbaI TGATCA 3 cut(s) 411, 472, 535
Fnu4HI GCNGC 2 cut(s) 850, 1014
FriOI GRGCYC 2 cut(s) 174, 552
Fsp4HI GCNGC 2 cut(s) 850, 1014
GlaI GCGC 2 cut(s) 1084, 1190
GluI GCNGC 2 cut(s) 850, 1014
GsaI CCCAGC 1 cut(s) 226
GsuI CTGGAG 1 cut(s) 1253
HaeIII GGCC 4 cut(s) 239, 609, 756, 834
HapII CCGG 4 cut(s) 333, 570, 661, 785
HhaI GCGC 2 cut(s) 1085, 1191
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 1 cut(s) 418
Hin6I GCGC 2 cut(s) 1083, 1189
HinP1I GCGC 2 cut(s) 1083, 1189
HincII GTYRAC 1 cut(s) 1168
HindII GTYRAC 1 cut(s) 1168
HinfI GANTC 8 cut(s) 190, 251, 281, 340, 385, 692, 747, 1228
HpaII CCGG 4 cut(s) 333, 570, 661, 785
HphI GGTGA 3 cut(s) 896, 1102, 1236
Hpy166II GTNNAC 1 cut(s) 1168
Hpy188I TCNGA 6 cut(s) 78, 280, 603, 636, 687, 1251
Hpy188III TCNNGA 8 cut(s) 64, 91, 104, 376, 533, 577, 1232, 1271
Hpy8I GTNNAC 1 cut(s) 1168
Hpy99I CGWCG 2 cut(s) 19, 830
HpyAV CCTTC 6 cut(s) 205, 393, 801, 1198, 1203, 1217
HpyCH4III ACNGT 5 cut(s) 151, 463, 871, 989, 1007
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 5 cut(s) 418, 852, 879, 1038, 1136
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 1186
HpyF3I CTNAG 1 cut(s) 1058
HpySE526I ACGT 1 cut(s) 17
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 1 cut(s) 418
HspAI GCGC 2 cut(s) 1083, 1189
Ksp22I TGATCA 3 cut(s) 411, 472, 535
Kzo9I GATC 6 cut(s) 40, 411, 472, 535, 997, 1251
LmnI GCTCC 3 cut(s) 742, 1056, 1177
Lsp1109I GCAGC 2 cut(s) 836, 1000
LweI GCATC 3 cut(s) 63, 97, 634
MabI ACCWGGT 1 cut(s) 432
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 4 cut(s) 257, 711, 1001, 1090
MalI GATC 6 cut(s) 42, 413, 474, 537, 999, 1253
MboI GATC 6 cut(s) 40, 411, 472, 535, 997, 1251
MboII GAAGA 6 cut(s) 210, 548, 590, 1080, 1167, 1213
MfeI CAATTG 2 cut(s) 447, 702
MhlI GDGCHC 3 cut(s) 174, 552, 739
MluCI AATT 9 cut(s) 207, 214, 274, 447, 562, 702, 760, 928, 1257
MlyI GAGTC 2 cut(s) 349, 741
MmeI TCCRAC 1 cut(s) 338
MroXI GAANNNNTTC 2 cut(s) 194, 1227
MseI TTAA 2 cut(s) 114, 561
MslI CAYNNNNRTG 1 cut(s) 393
MspI CCGG 4 cut(s) 333, 570, 661, 785
MspR9I CCNGG 5 cut(s) 334, 434, 697, 744, 810
MunI CAATTG 2 cut(s) 447, 702
MvaI CCWGG 4 cut(s) 434, 697, 744, 810
MvnI CGCG 1 cut(s) 1083
MwoI GCNNNNNNNGC 2 cut(s) 236, 1186
NciI CCSGG 1 cut(s) 334
NdeII GATC 6 cut(s) 40, 411, 472, 535, 997, 1251
NlaIII CATG 1 cut(s) 418
NlaIV GGNNCC 2 cut(s) 789, 1179
NmuCI GTSAC 1 cut(s) 1090
OliI CACNNNNGTG 1 cut(s) 393
PceI AGGCCT 1 cut(s) 609
PcsI WCGNNNNNNNCGW 2 cut(s) 628, 822
PdmI GAANNNNTTC 2 cut(s) 194, 1227
PfeI GAWTC 6 cut(s) 190, 251, 281, 385, 692, 1228
PfoI TCCNGGA 1 cut(s) 742
PinAI ACCGGT 1 cut(s) 569
PkrI GCNGC 2 cut(s) 851, 1015
PleI GAGTC 2 cut(s) 348, 741
PpsI GAGTC 2 cut(s) 348, 741
Psp124BI GAGCTC 1 cut(s) 174
Psp6I CCWGG 4 cut(s) 432, 695, 742, 808
PspEI GGTNACC 1 cut(s) 711
PspFI CCCAGC 1 cut(s) 222
PspGI CCWGG 4 cut(s) 432, 695, 742, 808
PspN4I GGNNCC 2 cut(s) 789, 1179
PspPI GGNCC 4 cut(s) 237, 452, 832, 1027
PstNI CAGNNNCTG 1 cut(s) 343
RsaI GTAC 5 cut(s) 25, 668, 868, 1114, 1212
RsaNI GTAC 5 cut(s) 24, 667, 867, 1113, 1211
RseI CAYNNNNRTG 1 cut(s) 393
SacI GAGCTC 1 cut(s) 174
SaqAI TTAA 2 cut(s) 114, 561
SatI GCNGC 2 cut(s) 850, 1014
Sau3AI GATC 6 cut(s) 40, 411, 472, 535, 997, 1251
Sau96I GGNCC 4 cut(s) 237, 452, 832, 1027
ScaI AGTACT 1 cut(s) 25
SchI GAGTC 2 cut(s) 349, 741
ScrFI CCNGG 5 cut(s) 334, 434, 697, 744, 810
SduI GDGCHC 3 cut(s) 174, 552, 739
SexAI ACCWGGT 1 cut(s) 432
SfaNI GCATC 3 cut(s) 63, 97, 634
SfcI CTRYAG 1 cut(s) 673
SinI GGWCC 2 cut(s) 452, 1027
SmiMI CAYNNNNRTG 1 cut(s) 393
SmlI CTYRAG 2 cut(s) 391, 862
SmoI CTYRAG 2 cut(s) 391, 862
Sse9I AATT 9 cut(s) 207, 214, 274, 447, 562, 702, 760, 928, 1257
SseBI AGGCCT 1 cut(s) 609
SstI GAGCTC 1 cut(s) 174
StuI AGGCCT 1 cut(s) 609
StyD4I CCNGG 5 cut(s) 332, 432, 695, 742, 808
TaaI ACNGT 5 cut(s) 151, 463, 871, 989, 1007
TaiI ACGT 1 cut(s) 20
TaqI TCGA 6 cut(s) 63, 142, 377, 825, 918, 1196
TasI AATT 9 cut(s) 207, 214, 274, 447, 562, 702, 760, 928, 1257
TatI WGTACW 3 cut(s) 23, 666, 866
TfiI GAWTC 6 cut(s) 190, 251, 281, 385, 692, 1228
Tru1I TTAA 2 cut(s) 114, 561
Tru9I TTAA 2 cut(s) 114, 561
TscAI CASTG 3 cut(s) 468, 499, 1040
TseFI GTSAC 1 cut(s) 1090
TseI GCWGC 2 cut(s) 849, 1013
Tsp45I GTSAC 1 cut(s) 1090
TspDTI ATGAA 4 cut(s) 811, 888, 906, 1214
TspGWI ACGGA 2 cut(s) 361, 1040
TspRI CASTG 3 cut(s) 468, 499, 1040
VpaK11BI GGWCC 2 cut(s) 452, 1027
XapI RAATTY 3 cut(s) 214, 760, 1257
XmnI GAANNNNTTC 2 cut(s) 194, 1227
ZraI GACGTC 1 cut(s) 18
ZrmI AGTACT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.