Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Forward (+)

13446709 .. 13448611

Gene Structure 1903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0101300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGGAGAAGTTGATCCAGCTTTCATCCAAGACCCTGAACACAGACCTAAACTCTCCATCATCGAACCTGAAGGCATACCATTGATAGACCTCTCTCCATTAAGCTCCCCACACTCCATTTCTGACCCTAAAGCCATTGAAGTGCTTGTTAGAGAAATAGGGAATGCATGCAAGAACTGGGGCTTCTTCCAAGTGATCAACCATGGAGTGCCACTGGAAAAGCGCAAAAAGATTGATACTGCGGCCAGGAAGTTCTTTGCTCAGCCTTTGGAGGAGAAGAGAAAGATTAGGAGGGATGAAAAATGTGTGGTAGGTTACTATGACACTGAGCATACCAAAAATGTTAGAGACTGGAAGGAGGTGTTTGATTTCCTTGTGGAGGAGCCTACATTAGTACCCTCCTCGACTGAGCCTGATGACAAGGAGGAGACACAGTGGTTTAATCAATGGCCTGAGAACCCCCCTGAATTAAGGGAGGTGCTTGAAGAATATTCTCAAGAAGTAGAAAAGCTATCTCTAAAGTTGATGGGACTAATTGCGTTGAGCCTAGGCTTGCCAGAAGACAGGTTCAAAGGCTACTTCAAGGACCAAACCAGTTTTATCAGACTCAATCACTATCCACCTTGCCCTTCCCCTCAGTTAGCACTCGGTGTTGGGCGCCACAAGGATGGTGGTGCCTTAACTGTACTGGCTCAAGATGAGGTTGGAGGATTGGAGGTGAAGCGAAAAACAGATGGAGAGTGGATTCGGGTCAGACCTACACCAAATGCCTATATCATCAATGTTGGTGACATAATTCAGGTATGGAGCAACGATAAATATGAGAGTGTGGAACATAGGGTGATGGTAAACTCAGAGAAGGAGAGGTTTTCTGTTCCCTTCTTTCTTAACCCAGCACACTACACAGAAGTGAAGCCTTTGGAGGAGCTCACCAATAAACAAAACCCTGCCAAGTATAGGCCCTATAGCTGGGGCAAGTTTCTGACTCTCAGAAAGCTCAGTAATTTCAAGAAACTCAAAGCTGAAAACATCCAAATCTATCATTTCAGGGTTTCAGATCAAGCGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

356

Amino Acids

41.15

Weight (kDa)

6.06

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	26 - 153	3.8e-32	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	199 - 298	3.6e-34	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	657, 674
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	1 cut(s)	8
AcoI	YGGCCR	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	658
AdeI	CACNNNGTG	1 cut(s)	650
AfaI	GTAC	2 cut(s)	396, 687
AfiI	CCNNNNNNNGG	3 cut(s)	379, 957, 969
AgsI	TTSAA	5 cut(s)	140, 485, 571, 583, 1009
AjnI	CCWGG	1 cut(s)	245
AleI	CACNNNNGTG	1 cut(s)	908
AluBI	AGCT	7 cut(s)	20, 105, 511, 928, 969, 997, 1022
AluI	AGCT	7 cut(s)	20, 105, 511, 928, 969, 997, 1022
Alw21I	GWGCWC	1 cut(s)	930
Alw26I	GTCTC	2 cut(s)	342, 422
AlwI	GGATC	1 cut(s)	8
AoxI	GGCC	3 cut(s)	243, 449, 959
AspA2I	CCTAGG	1 cut(s)	547
AspLEI	GCGC	2 cut(s)	225, 660
AspS9I	GGNCC	2 cut(s)	586, 960
AsuHPI	GGTGA	4 cut(s)	730, 800, 853, 922
AvaII	GGWCC	1 cut(s)	586
AvrII	CCTAGG	1 cut(s)	547
BaeI	ACNNNNGTAYC	2 cut(s)	378, 411
BanI	GGYRCC	2 cut(s)	657, 674
BanII	GRGCYC	1 cut(s)	930
BbsI	GAAGAC	1 cut(s)	567
Bbv12I	GWGCWC	1 cut(s)	930
BccI	CCATC	5 cut(s)	65, 520, 662, 728, 838
BciT130I	CCWGG	1 cut(s)	247
BclI	TGATCA	1 cut(s)	195
BcoDI	GTCTC	2 cut(s)	342, 422
BfaI	CTAG	1 cut(s)	548
BfmI	CTRYAG	1 cut(s)	964
BfoI	RGCGCY	1 cut(s)	661
BisI	GCNGC	1 cut(s)	243
BlnI	CCTAGG	1 cut(s)	547
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	247
Bme18I	GGWCC	1 cut(s)	586
BmgT120I	GGNCC	2 cut(s)	586, 960
BmiI	GGNNCC	3 cut(s)	384, 659, 676
BmrFI	CCNGG	1 cut(s)	247
BmrI	ACTGGG	1 cut(s)	187
BmuI	ACTGGG	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	567
Bpu1102I	GCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	2 cut(s)	480, 678
BsaHI	GRCGYC	1 cut(s)	658
BsaJI	CCNNGG	2 cut(s)	202, 547
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bsc4I	CCNNNNNNNGG	3 cut(s)	379, 957, 969
Bse1I	ACTGG	5 cut(s)	182, 219, 356, 594, 693
BseBI	CCWGG	1 cut(s)	247
BseDI	CCNNGG	2 cut(s)	202, 547
BseGI	GGATG	4 cut(s)	24, 301, 673, 1029
BseLI	CCNNNNNNNGG	3 cut(s)	379, 957, 969
BseMII	CTCAG	8 cut(s)	275, 318, 399, 444, 650, 867, 1003, 1012
BseNI	ACTGG	5 cut(s)	182, 219, 356, 594, 693
BseRI	GAGGAG	5 cut(s)	287, 391, 395, 440, 938
BseYI	CCCAGC	2 cut(s)	892, 969
BshFI	GGCC	3 cut(s)	245, 451, 961
BshNI	GGYRCC	2 cut(s)	657, 674
BsiHKAI	GWGCWC	1 cut(s)	930
BslFI	GGGAC	1 cut(s)	543
BslI	CCNNNNNNNGG	3 cut(s)	379, 957, 969
BsmAI	GTCTC	2 cut(s)	342, 422
BsmFI	GGGAC	1 cut(s)	543
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	3 cut(s)	245, 451, 961
Bsp1286I	GDGCHC	1 cut(s)	930
Bsp143I	GATC	3 cut(s)	13, 195, 1057
Bsp1720I	GCTNAGC	1 cut(s)	261
Bsp19I	CCATGG	1 cut(s)	202
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	3 cut(s)	245, 451, 961
BspCNI	CTCAG	8 cut(s)	274, 319, 400, 445, 649, 866, 1002, 1011
BspLI	GGNNCC	3 cut(s)	384, 659, 676
BspPI	GGATC	1 cut(s)	8
BspT107I	GGYRCC	2 cut(s)	657, 674
BsrI	ACTGG	5 cut(s)	182, 219, 356, 594, 693
BssECI	CCNNGG	2 cut(s)	202, 547
BssMI	GATC	3 cut(s)	13, 195, 1057
BssNI	GRCGYC	1 cut(s)	658
BssT1I	CCWWGG	2 cut(s)	202, 547
Bst2UI	CCWGG	1 cut(s)	247
Bst4CI	ACNGT	2 cut(s)	435, 685
Bst6I	CTCTTC	1 cut(s)	272
BstACI	GRCGYC	1 cut(s)	658
BstC8I	GCNNGC	2 cut(s)	169, 554
BstDEI	CTNAG	8 cut(s)	261, 327, 408, 453, 636, 853, 989, 998
BstDSI	CCRYGG	1 cut(s)	202
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstF5I	GGATG	4 cut(s)	24, 301, 673, 1029
BstH2I	RGCGCY	1 cut(s)	661
BstHHI	GCGC	2 cut(s)	225, 660
BstKTI	GATC	3 cut(s)	16, 198, 1060
BstMAI	GTCTC	2 cut(s)	342, 422
BstMBI	GATC	3 cut(s)	13, 195, 1057
BstNI	CCWGG	1 cut(s)	247
BstNSI	RCATGY	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	245
BstSFI	CTRYAG	1 cut(s)	964
BstV2I	GAAGAC	1 cut(s)	567
BstXI	CCANNNNNNTGG	1 cut(s)	668
BsuRI	GGCC	3 cut(s)	245, 451, 961
BtgI	CCRYGG	1 cut(s)	202
BtsCI	GGATG	4 cut(s)	24, 301, 673, 1029
BtsIMutI	CAGTG	3 cut(s)	212, 324, 440
Cac8I	GCNNGC	2 cut(s)	169, 554
CfoI	GCGC	2 cut(s)	225, 660
Cfr13I	GGNCC	2 cut(s)	586, 960
Csp6I	GTAC	2 cut(s)	395, 686
CspCI	CAANNNNNGTGG	2 cut(s)	652, 687
CviAII	CATG	2 cut(s)	168, 203
CviQI	GTAC	2 cut(s)	395, 686
DdeI	CTNAG	8 cut(s)	261, 327, 408, 453, 636, 853, 989, 998
DinI	GGCGCC	1 cut(s)	659
DpnI	GATC	3 cut(s)	15, 197, 1059
DpnII	GATC	3 cut(s)	13, 195, 1057
DraIII	CACNNNGTG	1 cut(s)	650
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Ecl136II	GAGCTC	1 cut(s)	928
Eco130I	CCWWGG	2 cut(s)	202, 547
Eco24I	GRGCYC	1 cut(s)	930
Eco47I	GGWCC	1 cut(s)	586
Eco53kI	GAGCTC	1 cut(s)	928
Eco57I	CTGAAG	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	928
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoO109I	RGGNCCY	1 cut(s)	960
EcoRII	CCWGG	1 cut(s)	245
EcoT14I	CCWWGG	2 cut(s)	202, 547
EcoT22I	ATGCAT	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	930
EgeI	GGCGCC	1 cut(s)	659
EheI	GGCGCC	1 cut(s)	659
ErhI	CCWWGG	2 cut(s)	202, 547
FaeI	CATG	2 cut(s)	171, 206
FaqI	GGGAC	1 cut(s)	543
FatI	CATG	2 cut(s)	167, 202
FbaI	TGATCA	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	4 cut(s)	11, 308, 680, 1016
FriOI	GRGCYC	1 cut(s)	930
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	548
GlaI	GCGC	2 cut(s)	224, 659
GluI	GCNGC	1 cut(s)	243
GsaI	CCCAGC	2 cut(s)	896, 973
HaeII	RGCGCY	1 cut(s)	661
HaeIII	GGCC	3 cut(s)	245, 451, 961
HhaI	GCGC	2 cut(s)	225, 660
Hin1I	GRCGYC	1 cut(s)	658
Hin1II	CATG	2 cut(s)	171, 206
Hin6I	GCGC	2 cut(s)	223, 658
HinP1I	GCGC	2 cut(s)	223, 658
HinfI	GANTC	3 cut(s)	606, 745, 985
HphI	GGTGA	4 cut(s)	730, 800, 853, 922
Hpy166II	GTNNAC	1 cut(s)	850
Hpy188I	TCNGA	7 cut(s)	124, 605, 755, 856, 984, 992, 1057
Hpy188III	TCNNGA	3 cut(s)	497, 695, 1009
Hpy8I	GTNNAC	1 cut(s)	850
HpyAV	CCTTC	5 cut(s)	65, 349, 639, 853, 889
HpyCH4III	ACNGT	2 cut(s)	435, 685
HpyCH4V	TGCA	2 cut(s)	167, 171
HpyF3I	CTNAG	8 cut(s)	261, 327, 408, 453, 636, 853, 989, 998
Hsp92I	GRCGYC	1 cut(s)	658
Hsp92II	CATG	2 cut(s)	171, 206
HspAI	GCGC	2 cut(s)	223, 658
KasI	GGCGCC	1 cut(s)	657
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	3 cut(s)	13, 195, 1057
LmnI	GCTCC	4 cut(s)	110, 382, 807, 925
MaeI	CTAG	1 cut(s)	548
MaeIII	GTNAC	2 cut(s)	314, 788
MalI	GATC	3 cut(s)	15, 197, 1059
MboI	GATC	3 cut(s)	13, 195, 1057
MboII	GAAGA	4 cut(s)	178, 289, 497, 572
MhlI	GDGCHC	1 cut(s)	930
MluCI	AATT	4 cut(s)	467, 534, 795, 1003
Mly113I	GGCGCC	1 cut(s)	658
MlyI	GAGTC	2 cut(s)	600, 979
MmeI	TCCRAC	1 cut(s)	685
Mph1103I	ATGCAT	1 cut(s)	169
MseI	TTAA	5 cut(s)	101, 441, 470, 680, 888
MslI	CAYNNNNRTG	3 cut(s)	140, 666, 908
MspR9I	CCNGG	1 cut(s)	247
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	247
NarI	GGCGCC	1 cut(s)	658
NcoI	CCATGG	1 cut(s)	202
NdeII	GATC	3 cut(s)	13, 195, 1057
NlaIII	CATG	2 cut(s)	171, 206
NlaIV	GGNNCC	3 cut(s)	384, 659, 676
NmuCI	GTSAC	1 cut(s)	788
NsiI	ATGCAT	1 cut(s)	169
NspI	RCATGY	1 cut(s)	171
OliI	CACNNNNGTG	1 cut(s)	908
PaeI	GCATGC	1 cut(s)	171
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	745
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	2 cut(s)	600, 979
PluTI	GGCGCC	1 cut(s)	661
PpsI	GAGTC	2 cut(s)	600, 979
Psp124BI	GAGCTC	1 cut(s)	930
Psp6I	CCWGG	1 cut(s)	245
PspFI	CCCAGC	2 cut(s)	892, 969
PspGI	CCWGG	1 cut(s)	245
PspN4I	GGNNCC	3 cut(s)	384, 659, 676
PspPI	GGNCC	2 cut(s)	586, 960
RsaI	GTAC	2 cut(s)	396, 687
RsaNI	GTAC	2 cut(s)	395, 686
RseI	CAYNNNNRTG	3 cut(s)	140, 666, 908
SacI	GAGCTC	1 cut(s)	930
SaqAI	TTAA	5 cut(s)	101, 441, 470, 680, 888
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	3 cut(s)	13, 195, 1057
Sau96I	GGNCC	2 cut(s)	586, 960
SchI	GAGTC	2 cut(s)	600, 979
ScrFI	CCNGG	1 cut(s)	247
SduI	GDGCHC	1 cut(s)	930
SfcI	CTRYAG	1 cut(s)	964
SfoI	GGCGCC	1 cut(s)	659
SinI	GGWCC	1 cut(s)	586
SmiMI	CAYNNNNRTG	3 cut(s)	140, 666, 908
SmlI	CTYRAG	2 cut(s)	495, 693
SmoI	CTYRAG	2 cut(s)	495, 693
SphI	GCATGC	1 cut(s)	171
Sse9I	AATT	4 cut(s)	467, 534, 795, 1003
SsiI	CCGC	1 cut(s)	242
SspDI	GGCGCC	1 cut(s)	657
SspI	AATATT	1 cut(s)	491
SspMI	CTAG	1 cut(s)	548
SstI	GAGCTC	1 cut(s)	930
StyD4I	CCNGG	1 cut(s)	245
StyI	CCWWGG	2 cut(s)	202, 547
TaaI	ACNGT	2 cut(s)	435, 685
TaqI	TCGA	2 cut(s)	63, 404
TasI	AATT	4 cut(s)	467, 534, 795, 1003
TatI	WGTACW	1 cut(s)	685
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	1 cut(s)	745
Tru1I	TTAA	5 cut(s)	101, 441, 470, 680, 888
Tru9I	TTAA	5 cut(s)	101, 441, 470, 680, 888
TscAI	CASTG	3 cut(s)	219, 331, 440
TseFI	GTSAC	1 cut(s)	788
Tsp45I	GTSAC	1 cut(s)	788
TspDTI	ATGAA	2 cut(s)	13, 312
TspRI	CASTG	3 cut(s)	219, 331, 440
VpaK11BI	GGWCC	1 cut(s)	586
XagI	CCTNNNNNAGG	1 cut(s)	377
XceI	RCATGY	1 cut(s)	171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	668
XmaJI	CCTAGG	1 cut(s)	547
XspI	CTAG	1 cut(s)	548
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.