Rroxscaffold_7G00180750

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
20074674 .. 20075213
540 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00180750.1

Sequence Viewer

Length: 540 bp
ATGGACCAGCAGTGTAGAAAACAAAAGCTCCCTCTACGATTTGGAAGAACTCCCCAAAGCAATGTGGTGACAACCTTTGTCAAAAAGGGTACTACTGATGAGAGTTCAGGTACAAAAAGGGTGAGCAAGGGAAGAAAAAATATTAACACAATCATATTTATCAGCAGCACTGCAACTTTAACTTTTTCACTCGTTATTATGGCAATTACTGGTGTTGTTATATATAGATATCGTGTTTGGGATTACCGAAAGGTTACTAATTCAGCTGGTGAAGGGTTAATTGAAGGTGTTACGCTGCGGTCATATACATATTGTGAACTTGAAAAGGCAACCAAAGGCTTCACCAATCAAGTGGGAAAAGGAGCTTTTGGGACAATTTTTAAAGGGGTGATTGGTGGGAGAGAAGTGGCAATCAAGCAACCAGAGACAGTGGTGGATGAAGGAGAGCGAGAGTTTTGTAATGAGATGAATGCAATTGGGAGAACTCATCACAAGAATCTAGTGAAATTGCTTGGCTACTGTCATGATGGAAGTACATGA

Protein Analysis

179

Amino Acids

19.89

Weight (kDa)

9.67

Isoelectric Point (pI)

21.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 115 - 176 8.2e-09 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 116 - 177 5.9e-06 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 298
AfaI GTAC 3 cut(s) 91, 112, 535
AgsI TTSAA 2 cut(s) 284, 323
AluBI AGCT 3 cut(s) 28, 266, 365
AluI AGCT 3 cut(s) 28, 266, 365
Alw26I GTCTC 1 cut(s) 419
ApeKI GCWGC 2 cut(s) 165, 295
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 5 cut(s) 79, 133, 281, 334, 400
AvaII GGWCC 1 cut(s) 4
BbvI GCAGC 2 cut(s) 177, 282
BccI CCATC 1 cut(s) 521
BcoDI GTCTC 1 cut(s) 419
BfaI CTAG 1 cut(s) 500
BisI GCNGC 2 cut(s) 166, 296
BlsI GCNGC 2 cut(s) 167, 297
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bse1I ACTGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 67
BseGI GGATG 1 cut(s) 442
BseMI GCAATG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 214
BseXI GCAGC 2 cut(s) 177, 282
BslFI GGGAC 1 cut(s) 385
BsmAI GTCTC 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 385
BsmI GAATGC 1 cut(s) 475
BspACI CCGC 1 cut(s) 298
BspHI TCATGA 1 cut(s) 523
BsrDI GCAATG 1 cut(s) 67
BsrI ACTGG 1 cut(s) 214
Bst4CI ACNGT 2 cut(s) 430, 521
BstF5I GGATG 1 cut(s) 442
BstMAI GTCTC 1 cut(s) 419
BstV1I GCAGC 2 cut(s) 177, 282
BstXI CCANNNNNNTGG 1 cut(s) 352
BtsCI GGATG 1 cut(s) 442
BtsI GCAGTG 2 cut(s) 17, 168
BtsIMutI CAGTG 3 cut(s) 17, 168, 435
CciI TCATGA 1 cut(s) 523
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 3 cut(s) 90, 111, 534
CviAII CATG 2 cut(s) 524, 537
CviJI RGCY 5 cut(s) 28, 266, 339, 365, 516
CviKI_1 RGCY 5 cut(s) 28, 266, 339, 365, 516
CviQI GTAC 3 cut(s) 90, 111, 534
DraI TTTAAA 1 cut(s) 382
Eco32I GATATC 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 4
EcoRV GATATC 1 cut(s) 230
FaeI CATG 2 cut(s) 527, 540
FaqI GGGAC 1 cut(s) 385
FatI CATG 2 cut(s) 523, 536
Fnu4HI GCNGC 2 cut(s) 166, 296
FokI GGATG 1 cut(s) 449
Fsp4HI GCNGC 2 cut(s) 166, 296
FspBI CTAG 1 cut(s) 500
GluI GCNGC 2 cut(s) 166, 296
Hin1II CATG 2 cut(s) 527, 540
HinfI GANTC 1 cut(s) 496
HphI GGTGA 5 cut(s) 79, 133, 281, 334, 400
Hpy166II GTNNAC 1 cut(s) 317
Hpy188III TCNNGA 1 cut(s) 524
Hpy8I GTNNAC 1 cut(s) 317
HpyAV CCTTC 3 cut(s) 266, 278, 434
HpyCH4III ACNGT 2 cut(s) 430, 521
HpyCH4V TGCA 2 cut(s) 173, 473
Hsp92II CATG 2 cut(s) 527, 540
LmnI GCTCC 2 cut(s) 33, 362
LpnPI CCDG 5 cut(s) 20, 93, 195, 252, 435
Lsp1109I GCAGC 2 cut(s) 177, 282
MaeI CTAG 1 cut(s) 500
MaeIII GTNAC 3 cut(s) 67, 253, 289
MboII GAAGA 2 cut(s) 57, 144
MfeI CAATTG 1 cut(s) 474
MluCI AATT 6 cut(s) 204, 259, 279, 375, 474, 506
MnlI CCTC 1 cut(s) 42
MseI TTAA 4 cut(s) 144, 179, 278, 381
MspA1I CMGCKG 1 cut(s) 266
MunI CAATTG 1 cut(s) 474
Mva1269I GAATGC 1 cut(s) 475
NlaIII CATG 2 cut(s) 527, 540
NmuCI GTSAC 1 cut(s) 67
PagI TCATGA 1 cut(s) 523
PctI GAATGC 1 cut(s) 475
PfeI GAWTC 1 cut(s) 496
PkrI GCNGC 2 cut(s) 167, 297
PspPI GGNCC 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 3 cut(s) 91, 112, 535
RsaNI GTAC 3 cut(s) 90, 111, 534
SaqAI TTAA 4 cut(s) 144, 179, 278, 381
SatI GCNGC 2 cut(s) 166, 296
Sau96I GGNCC 1 cut(s) 4
SetI ASST 7 cut(s) 30, 77, 112, 255, 268, 289, 367
SinI GGWCC 1 cut(s) 4
Sse9I AATT 6 cut(s) 204, 259, 279, 375, 474, 506
SsiI CCGC 1 cut(s) 298
SspI AATATT 1 cut(s) 142
SspMI CTAG 1 cut(s) 500
TaaI ACNGT 2 cut(s) 430, 521
TasI AATT 6 cut(s) 204, 259, 279, 375, 474, 506
TatI WGTACW 1 cut(s) 533
TfiI GAWTC 1 cut(s) 496
Tru1I TTAA 4 cut(s) 144, 179, 278, 381
Tru9I TTAA 4 cut(s) 144, 179, 278, 381
TscAI CASTG 3 cut(s) 17, 175, 435
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 2 cut(s) 165, 295
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 2 cut(s) 453, 482
TspRI CASTG 3 cut(s) 17, 175, 435
VpaK11BI GGWCC 1 cut(s) 4
XspI CTAG 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.