Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Reverse (-)

37855361 .. 37856406

Gene Structure 1046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG212200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGCTTGATTCAGGTAACTTTGTCCTCTACAATTCTGATTCAAACATCATTTGGCAGACTTTTGATGTTCCTACAGATACCATTGTATTCGGGCAGCATCTTTCGGCTGGAAAAAAGCTCATCTCCTCCATCTCGAACACGAATCACTCAAGTGGAAGGTTTCAAGTGATCATGCAGAGAGATGGCAACCTGGTTCAGTATCCAATTGGTCCATTTACATTGAGTCCTAGTAAATATTCGTATTGGAACACTGGGACATTCAGAGCTGGGAACAATGTGTCCCTCAATCTTGATCAAAATGGAGGGCTCTATCTTCTTAATTCCACCGGTTTCAAGATAAAAAGTTTTCCTCTTAAGAATAGCCTTTCTATGAATCGTGGCTATCGTCTCACGATTGATGCTGATGGAATACTCCGGTTGTACTCCAACAGTTTGGTTCTGAATGATTCCTGGGCAATTGAGTGGTCACCAGCAGTTGATAAGTGTGCTCCTCTTGGCCTCTGTGGCCTAAATTCTTATTGTGTTCTTGTGGAACAGGAACCTTCTTGTGTATGTCTCCCTGGTTTCGTTTTCATCGACGAGGGCAAAAGATATTTAGGCTGCAAGAGAAACTTGAGTACAGTTGTTTGCAAAGGTGAGAATGAAACTTCATATTCTATTGTTGATGTGGATAACATAGATTGGGAAAACACTCCATACTCTAATCTATCATTGGATAAGACTGCTTGTAAAGAGGACTGTTTGATGGATTGCGACTGTGAAGCTGCGATATTTAGGGACCAGCAGTGCGGAAAACAAAAGCTCCCTCTAAGATTTGGAAGAACTCGCAAACCTGGTGTGGTGACAACCTTTGTCAAAAAGGATACTACTGATGAGAGTTTTGATACAAAAAGGAGGAGCAAGGGGAGAAAAAATGTTGACAGAATATCGTGTTTGGAATTACCGAAAGCTTACAAATTCAGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

322

Amino Acids

36.14

Weight (kDa)

8.34

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	1 - 38	1.3e-06	D-mannose binding lectin
S_locus_glycop	PF00954	125 - 190	7.2e-07	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	789
AcsI	RAATTY	2 cut(s)	511, 956
AfaI	GTAC	2 cut(s)	422, 619
AflII	CTTAAG	1 cut(s)	353
AgeI	ACCGGT	1 cut(s)	326
AgsI	TTSAA	3 cut(s)	42, 164, 334
AjnI	CCWGG	4 cut(s)	189, 449, 559, 832
AleI	CACNNNNGTG	1 cut(s)	150
AloI	GAACNNNNNNTCC	2 cut(s)	263, 295
AluBI	AGCT	6 cut(s)	118, 266, 764, 802, 950, 963
AluI	AGCT	6 cut(s)	118, 266, 764, 802, 950, 963
Alw21I	GWGCWC	1 cut(s)	490
Alw26I	GTCTC	2 cut(s)	392, 560
AoxI	GGCC	2 cut(s)	496, 505
ApeKI	GCWGC	3 cut(s)	94, 600, 764
ApoI	RAATTY	2 cut(s)	511, 956
AsiGI	ACCGGT	1 cut(s)	326
AspS9I	GGNCC	2 cut(s)	209, 778
AsuHPI	GGTGA	3 cut(s)	459, 647, 853
AvaII	GGWCC	2 cut(s)	209, 778
BaeI	ACNNNNGTAYC	2 cut(s)	69, 102
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	490
BbvI	GCAGC	3 cut(s)	106, 587, 751
BccI	CCATC	4 cut(s)	137, 176, 398, 739
BciT130I	CCWGG	4 cut(s)	191, 451, 561, 834
BciVI	GTATCC	2 cut(s)	210, 856
BclI	TGATCA	2 cut(s)	168, 292
BcoDI	GTCTC	2 cut(s)	392, 560
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	1 cut(s)	72
BfrI	CTTAAG	1 cut(s)	353
BfuI	GTATCC	2 cut(s)	210, 856
BglI	GCCNNNNNGGC	1 cut(s)	504
BisI	GCNGC	3 cut(s)	95, 601, 765
BlsI	GCNGC	3 cut(s)	96, 602, 766
Bme1390I	CCNGG	4 cut(s)	191, 451, 561, 834
Bme18I	GGWCC	2 cut(s)	209, 778
BmgT120I	GGNCC	2 cut(s)	209, 778
BmiI	GGNNCC	2 cut(s)	540, 779
BmrFI	CCNGG	4 cut(s)	191, 451, 561, 834
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	2 cut(s)	106, 388
BmuI	ACTGGG	1 cut(s)	261
BpuEI	CTTGAG	2 cut(s)	133, 634
BsaJI	CCNNGG	2 cut(s)	450, 559
BsaWI	WCCGGW	2 cut(s)	326, 414
BsaXI	ACNNNNNCTCC	2 cut(s)	786, 816
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	256
BseBI	CCWGG	4 cut(s)	191, 451, 561, 834
BseDI	CCNNGG	2 cut(s)	450, 559
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	3 cut(s)	115, 480, 910
BseXI	GCAGC	3 cut(s)	106, 587, 751
BseYI	CCCAGC	1 cut(s)	266
BshFI	GGCC	2 cut(s)	498, 507
BshTI	ACCGGT	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	490
BsiSI	CCGG	2 cut(s)	327, 415
BslFI	GGGAC	3 cut(s)	265, 268, 791
BsmAI	GTCTC	2 cut(s)	392, 560
BsmBI	CGTCTC	1 cut(s)	392
BsmFI	GGGAC	3 cut(s)	265, 268, 791
BsnI	GGCC	2 cut(s)	498, 507
Bsp1286I	GDGCHC	2 cut(s)	309, 490
Bsp143I	GATC	2 cut(s)	168, 292
BspACI	CCGC	1 cut(s)	789
BspANI	GGCC	2 cut(s)	498, 507
BspLI	GGNNCC	2 cut(s)	540, 779
BspTI	CTTAAG	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	256
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	2 cut(s)	450, 559
BssMI	GATC	2 cut(s)	168, 292
Bst2UI	CCWGG	4 cut(s)	191, 451, 561, 834
Bst4CI	ACNGT	4 cut(s)	431, 622, 740, 758
BstAFI	CTTAAG	1 cut(s)	353
BstDEI	CTNAG	1 cut(s)	809
BstEII	GGTNACC	1 cut(s)	465
BstKTI	GATC	2 cut(s)	171, 295
BstMAI	GTCTC	2 cut(s)	392, 560
BstMBI	GATC	2 cut(s)	168, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	504
BstNI	CCWGG	4 cut(s)	191, 451, 561, 834
BstPI	GGTNACC	1 cut(s)	465
BstSCI	CCNGG	4 cut(s)	189, 449, 559, 832
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	3 cut(s)	106, 587, 751
BstXI	CCANNNNNNTGG	1 cut(s)	433
BsuI	GTATCC	2 cut(s)	210, 856
BsuRI	GGCC	2 cut(s)	498, 507
BtsI	GCAGTG	1 cut(s)	791
BtsIMutI	CAGTG	2 cut(s)	249, 791
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	2 cut(s)	209, 778
CsiI	ACCWGGT	2 cut(s)	189, 832
Csp6I	GTAC	2 cut(s)	421, 618
CspAI	ACCGGT	1 cut(s)	326
CviAII	CATG	1 cut(s)	172
CviQI	GTAC	2 cut(s)	421, 618
DdeI	CTNAG	1 cut(s)	809
DpnI	GATC	2 cut(s)	170, 294
DpnII	GATC	2 cut(s)	168, 292
Eco24I	GRGCYC	1 cut(s)	309
Eco47I	GGWCC	2 cut(s)	209, 778
Eco91I	GGTNACC	1 cut(s)	465
EcoO65I	GGTNACC	1 cut(s)	465
EcoRII	CCWGG	4 cut(s)	189, 449, 559, 832
EcoT38I	GRGCYC	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	392
FaeI	CATG	1 cut(s)	175
FaiI	YATR	6 cut(s)	173, 371, 553, 652, 677, 697
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FaqI	GGGAC	3 cut(s)	265, 268, 791
FatI	CATG	1 cut(s)	171
FbaI	TGATCA	2 cut(s)	168, 292
Fnu4HI	GCNGC	3 cut(s)	95, 601, 765
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	3 cut(s)	95, 601, 765
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	3 cut(s)	95, 601, 765
GsaI	CCCAGC	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	498, 507
HapII	CCGG	2 cut(s)	327, 415
Hin1II	CATG	1 cut(s)	175
HincII	GTYRAC	1 cut(s)	919
HindII	GTYRAC	1 cut(s)	919
HindIII	AAGCTT	1 cut(s)	948
HinfI	GANTC	6 cut(s)	8, 38, 142, 223, 373, 446
HpaII	CCGG	2 cut(s)	327, 415
HphI	GGTGA	3 cut(s)	459, 647, 853
Hpy166II	GTNNAC	1 cut(s)	919
Hpy188I	TCNGA	3 cut(s)	37, 263, 441
Hpy188III	TCNNGA	4 cut(s)	133, 290, 334, 391
Hpy8I	GTNNAC	1 cut(s)	919
Hpy99I	CGWCG	1 cut(s)	581
HpyAV	CCTTC	2 cut(s)	150, 552
HpyCH4III	ACNGT	4 cut(s)	431, 622, 740, 758
HpyCH4V	TGCA	3 cut(s)	175, 603, 630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	504
HpyF3I	CTNAG	1 cut(s)	809
Hsp92II	CATG	1 cut(s)	175
Ksp22I	TGATCA	2 cut(s)	168, 292
Kzo9I	GATC	2 cut(s)	168, 292
LmnI	GCTCC	3 cut(s)	493, 807, 897
Lsp1109I	GCAGC	3 cut(s)	106, 587, 751
LweI	GCATC	2 cut(s)	106, 388
MabI	ACCWGGT	2 cut(s)	189, 832
MaeI	CTAG	1 cut(s)	228
MaeIII	GTNAC	3 cut(s)	14, 465, 841
MalI	GATC	2 cut(s)	170, 294
MboI	GATC	2 cut(s)	168, 292
MboII	GAAGA	2 cut(s)	305, 831
MfeI	CAATTG	2 cut(s)	204, 456
MhlI	GDGCHC	2 cut(s)	309, 490
MluCI	AATT	7 cut(s)	31, 204, 319, 456, 511, 938, 956
MlyI	GAGTC	1 cut(s)	232
MmeI	TCCRAC	1 cut(s)	450
MseI	TTAA	2 cut(s)	318, 354
MslI	CAYNNNNRTG	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	963
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	2 cut(s)	327, 415
MspR9I	CCNGG	4 cut(s)	191, 451, 561, 834
MunI	CAATTG	2 cut(s)	204, 456
MvaI	CCWGG	4 cut(s)	191, 451, 561, 834
MwoI	GCNNNNNNNGC	1 cut(s)	504
NdeII	GATC	2 cut(s)	168, 292
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	2 cut(s)	540, 779
NmuCI	GTSAC	2 cut(s)	465, 841
OliI	CACNNNNGTG	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	2 cut(s)	382, 573
PfeI	GAWTC	5 cut(s)	8, 38, 142, 373, 446
PinAI	ACCGGT	1 cut(s)	326
PkrI	GCNGC	3 cut(s)	96, 602, 766
PleI	GAGTC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	231
Psp6I	CCWGG	4 cut(s)	189, 449, 559, 832
PspEI	GGTNACC	1 cut(s)	465
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	4 cut(s)	189, 449, 559, 832
PspN4I	GGNNCC	2 cut(s)	540, 779
PspPI	GGNCC	2 cut(s)	209, 778
PvuII	CAGCTG	1 cut(s)	963
RsaI	GTAC	2 cut(s)	422, 619
RsaNI	GTAC	2 cut(s)	421, 618
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	318, 354
SatI	GCNGC	3 cut(s)	95, 601, 765
Sau3AI	GATC	2 cut(s)	168, 292
Sau96I	GGNCC	2 cut(s)	209, 778
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	4 cut(s)	191, 451, 561, 834
SduI	GDGCHC	2 cut(s)	309, 490
SexAI	ACCWGGT	2 cut(s)	189, 832
SfaNI	GCATC	2 cut(s)	106, 388
SfcI	CTRYAG	1 cut(s)	72
SfiI	GGCCNNNNNGGCC	1 cut(s)	504
SinI	GGWCC	2 cut(s)	209, 778
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	3 cut(s)	148, 353, 613
SmoI	CTYRAG	3 cut(s)	148, 353, 613
Sse9I	AATT	7 cut(s)	31, 204, 319, 456, 511, 938, 956
SsiI	CCGC	1 cut(s)	789
SspI	AATATT	1 cut(s)	236
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	4 cut(s)	189, 449, 559, 832
TaaI	ACNGT	4 cut(s)	431, 622, 740, 758
TaqI	TCGA	2 cut(s)	134, 576
TasI	AATT	7 cut(s)	31, 204, 319, 456, 511, 938, 956
TatI	WGTACW	2 cut(s)	420, 617
TfiI	GAWTC	5 cut(s)	8, 38, 142, 373, 446
Tru1I	TTAA	2 cut(s)	318, 354
Tru9I	TTAA	2 cut(s)	318, 354
TscAI	CASTG	2 cut(s)	256, 791
TseFI	GTSAC	2 cut(s)	465, 841
TseI	GCWGC	3 cut(s)	94, 600, 764
Tsp45I	GTSAC	2 cut(s)	465, 841
TspDTI	ATGAA	4 cut(s)	386, 562, 639, 657
TspRI	CASTG	2 cut(s)	256, 791
Vha464I	CTTAAG	1 cut(s)	353
VpaK11BI	GGWCC	2 cut(s)	209, 778
XapI	RAATTY	2 cut(s)	511, 956
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.