Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Reverse (-)

38446777 .. 38447499

Gene Structure 723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24795

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAATGCAATTGGGAGAACTCATCACAAGAATCTAGTGAAATTGCTTGGCTACTGTCATGATGGAACAAATAGGCTTCTGGTTTATGAGTACATGACCAACGGCTCACTTGCGAATTTTCTTTTCAAATCTTATGGTGGAAGGCCAACTTGGGAGGATAGAGTCAGTATAGCCCTCAATGTAGCTCAAGGTATACTATATCTACATGAAGAGTGTGAGACACAAATCATTCATTGTGACATCAAACCAGAAAATATATTGATGACTGAGCAGAAATGTGCAAAGCTTGCTGATTTCGGATTAGCCAACCTGTTTAAAGCTGACCAATCCAGGACATATACTGGCTTCAGAGGAACCAGAGGTTATGTTGCACCTGAGTGGCATAGGTTCATGTCGATAACAGTGAAAGCGGACGTGTACAGCTTCGGGATTGTATTGTTGGAGATCATATGCTGTCGAAGAGTTTCGACCATGGCCATACCTAAGGATCAAGCAACTCTTGAGAATTGGATGTACCATTGTTTGGAGGCCAATGAACTGGATAAGCTAGTGAAAGATGATGATGGGATTGACACGAATAAATTTCGGGAGATGGTTAAGCTTGGTCTTTGCTGCATCCAGGAGGACCCATCATTGCGCCCTTCGATGAAGAAGGTGGTACTAATGCTGGAAGGGATACTAGAGATACCATCCCCTCCAAATTTTTTCAGTTCCAGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

240

Amino Acids

27.43

Weight (kDa)

6.7

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 220	5.5e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	4 - 221	5e-38	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	523
AccI	GTMKAC	1 cut(s)	193
AciI	CCGC	1 cut(s)	410
AclWI	GGATC	1 cut(s)	495
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	3 cut(s)	115, 581, 700
AcuI	CTGAAG	1 cut(s)	331
AfaI	GTAC	4 cut(s)	92, 419, 515, 660
AfiI	CCNNNNNNNGG	1 cut(s)	523
AflIII	ACRYGT	1 cut(s)	414
AgsI	TTSAA	1 cut(s)	127
AjiI	CACGTC	1 cut(s)	415
AjnI	CCWGG	2 cut(s)	329, 618
AjuI	GAANNNNNNNTTGG	2 cut(s)	133, 165
AleI	CACNNNNGTG	1 cut(s)	376
AluBI	AGCT	6 cut(s)	185, 286, 320, 423, 547, 601
AluI	AGCT	6 cut(s)	185, 286, 320, 423, 547, 601
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	1 cut(s)	495
AoxI	GGCC	3 cut(s)	143, 474, 528
ApeKI	GCWGC	1 cut(s)	612
ApoI	RAATTY	3 cut(s)	115, 581, 700
Asp700I	GAANNNNTTC	1 cut(s)	463
AspLEI	GCGC	1 cut(s)	639
AspS9I	GGNCC	1 cut(s)	625
AvaII	GGWCC	1 cut(s)	625
AxyI	CCTNAGG	1 cut(s)	483
BalI	TGGCCA	1 cut(s)	476
BbvI	GCAGC	1 cut(s)	599
BccI	CCATC	5 cut(s)	56, 557, 586, 637, 697
BceAI	ACGGC	1 cut(s)	118
BciT130I	CCWGG	2 cut(s)	331, 620
BciVI	GTATCC	1 cut(s)	669
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	3 cut(s)	35, 548, 680
BfuI	GTATCC	1 cut(s)	669
BisI	GCNGC	1 cut(s)	613
BlsI	GCNGC	1 cut(s)	614
Bme1390I	CCNGG	2 cut(s)	331, 620
Bme18I	GGWCC	1 cut(s)	625
BmgBI	CACGTC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	625
BmiI	GGNNCC	2 cut(s)	355, 627
BmrFI	CCNGG	2 cut(s)	331, 620
BmsI	GCATC	1 cut(s)	624
BpuEI	CTTGAG	2 cut(s)	171, 521
BsaJI	CCNNGG	1 cut(s)	471
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse1I	ACTGG	2 cut(s)	346, 543
Bse21I	CCTNAGG	1 cut(s)	483
Bse3DI	GCAATG	1 cut(s)	632
BseBI	CCWGG	2 cut(s)	331, 620
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	3 cut(s)	516, 615, 689
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMI	GCAATG	1 cut(s)	632
BseMII	CTCAG	2 cut(s)	258, 366
BseNI	ACTGG	2 cut(s)	346, 543
BseXI	GCAGC	1 cut(s)	599
BshFI	GGCC	3 cut(s)	145, 476, 530
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	3 cut(s)	145, 476, 530
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	2 cut(s)	444, 487
Bsp19I	CCATGG	1 cut(s)	471
BspACI	CCGC	1 cut(s)	410
BspANI	GGCC	3 cut(s)	145, 476, 530
BspCNI	CTCAG	2 cut(s)	259, 367
BspHI	TCATGA	1 cut(s)	58
BspLI	GGNNCC	2 cut(s)	355, 627
BspPI	GGATC	1 cut(s)	495
BsrDI	GCAATG	1 cut(s)	632
BsrGI	TGTACA	1 cut(s)	417
BsrI	ACTGG	2 cut(s)	346, 543
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	2 cut(s)	444, 487
BssNAI	GTATAC	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	471
Bst1107I	GTATAC	1 cut(s)	194
Bst2UI	CCWGG	2 cut(s)	331, 620
Bst4CI	ACNGT	2 cut(s)	56, 403
Bst6I	CTCTTC	2 cut(s)	204, 454
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstAUI	TGTACA	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	3 cut(s)	267, 375, 483
BstDSI	CCRYGG	1 cut(s)	471
BstF5I	GGATG	3 cut(s)	516, 615, 689
BstHHI	GCGC	1 cut(s)	639
BstKTI	GATC	2 cut(s)	447, 490
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	2 cut(s)	444, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	2 cut(s)	331, 620
BstSCI	CCNGG	2 cut(s)	329, 618
BstV1I	GCAGC	1 cut(s)	599
BstXI	CCANNNNNNTGG	1 cut(s)	538
BstZ17I	GTATAC	1 cut(s)	194
Bsu36I	CCTNAGG	1 cut(s)	483
BsuI	GTATCC	1 cut(s)	669
BsuRI	GGCC	3 cut(s)	145, 476, 530
BtgI	CCRYGG	1 cut(s)	471
BtrI	CACGTC	1 cut(s)	415
BtsCI	GGATG	3 cut(s)	516, 615, 689
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	1 cut(s)	288
CciI	TCATGA	1 cut(s)	58
CfoI	GCGC	1 cut(s)	639
Cfr13I	GGNCC	1 cut(s)	625
Csp6I	GTAC	4 cut(s)	91, 418, 514, 659
CviAII	CATG	5 cut(s)	59, 94, 206, 391, 472
CviQI	GTAC	4 cut(s)	91, 418, 514, 659
DdeI	CTNAG	3 cut(s)	267, 375, 483
DpnI	GATC	2 cut(s)	446, 489
DpnII	GATC	2 cut(s)	444, 487
DraI	TTTAAA	1 cut(s)	316
EaeI	YGGCCR	1 cut(s)	474
Eam1104I	CTCTTC	2 cut(s)	204, 454
EarI	CTCTTC	2 cut(s)	204, 454
Eco130I	CCWWGG	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	625
Eco57I	CTGAAG	1 cut(s)	331
Eco81I	CCTNAGG	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	625
EcoRII	CCWGG	2 cut(s)	329, 618
EcoT14I	CCWWGG	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	5 cut(s)	62, 97, 209, 394, 475
FalI	AAGNNNNNCTT	4 cut(s)	133, 165, 483, 515
FatI	CATG	5 cut(s)	58, 93, 205, 390, 471
FauNDI	CATATG	1 cut(s)	449
FblI	GTMKAC	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	613
FokI	GGATG	3 cut(s)	523, 602, 676
Fsp4HI	GCNGC	1 cut(s)	613
FspBI	CTAG	3 cut(s)	35, 548, 680
GlaI	GCGC	1 cut(s)	638
GluI	GCNGC	1 cut(s)	613
HaeIII	GGCC	3 cut(s)	145, 476, 530
HhaI	GCGC	1 cut(s)	639
Hin1II	CATG	5 cut(s)	62, 97, 209, 394, 475
Hin6I	GCGC	1 cut(s)	637
HinP1I	GCGC	1 cut(s)	637
HindIII	AAGCTT	2 cut(s)	284, 599
HinfI	GANTC	2 cut(s)	31, 162
Hpy166II	GTNNAC	2 cut(s)	194, 418
Hpy188I	TCNGA	2 cut(s)	299, 350
Hpy188III	TCNNGA	5 cut(s)	59, 427, 500, 587, 714
Hpy8I	GTNNAC	2 cut(s)	194, 418
HpyAV	CCTTC	4 cut(s)	135, 646, 651, 665
HpyCH4III	ACNGT	2 cut(s)	56, 403
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	4 cut(s)	8, 281, 371, 615
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	3 cut(s)	267, 375, 483
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	5 cut(s)	62, 97, 209, 394, 475
HspAI	GCGC	1 cut(s)	637
Kzo9I	GATC	2 cut(s)	444, 487
Lsp1109I	GCAGC	1 cut(s)	599
LweI	GCATC	1 cut(s)	624
MaeI	CTAG	3 cut(s)	35, 548, 680
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	2 cut(s)	446, 489
MboI	GATC	2 cut(s)	444, 487
MboII	GAAGA	3 cut(s)	221, 471, 661
MfeI	CAATTG	1 cut(s)	9
MlsI	TGGCCA	1 cut(s)	476
MluCI	AATT	6 cut(s)	9, 41, 115, 505, 581, 700
MluNI	TGGCCA	1 cut(s)	476
MlyI	GAGTC	1 cut(s)	171
MmeI	TCCRAC	1 cut(s)	420
MnlI	CCTC	7 cut(s)	148, 185, 344, 353, 520, 616, 705
Mox20I	TGGCCA	1 cut(s)	476
MroXI	GAANNNNTTC	1 cut(s)	463
MscI	TGGCCA	1 cut(s)	476
MseI	TTAA	2 cut(s)	315, 597
MslI	CAYNNNNRTG	1 cut(s)	376
Msp20I	TGGCCA	1 cut(s)	476
MspR9I	CCNGG	2 cut(s)	331, 620
MunI	CAATTG	1 cut(s)	9
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	2 cut(s)	331, 620
MwoI	GCNNNNNNNGC	1 cut(s)	287
NcoI	CCATGG	1 cut(s)	471
NdeI	CATATG	1 cut(s)	449
NdeII	GATC	2 cut(s)	444, 487
NlaIII	CATG	5 cut(s)	62, 97, 209, 394, 475
NlaIV	GGNNCC	2 cut(s)	355, 627
NmuCI	GTSAC	1 cut(s)	236
OliI	CACNNNNGTG	1 cut(s)	376
PagI	TCATGA	1 cut(s)	58
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	463
PfeI	GAWTC	1 cut(s)	31
PflMI	CCANNNNNTGG	1 cut(s)	523
PfoI	TCCNGGA	2 cut(s)	329, 618
PkrI	GCNGC	1 cut(s)	614
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PpuMI	RGGWCCY	1 cut(s)	625
Psp5II	RGGWCCY	1 cut(s)	625
Psp6I	CCWGG	2 cut(s)	329, 618
PspGI	CCWGG	2 cut(s)	329, 618
PspN4I	GGNNCC	2 cut(s)	355, 627
PspPI	GGNCC	1 cut(s)	625
PspPPI	RGGWCCY	1 cut(s)	625
RsaI	GTAC	4 cut(s)	92, 419, 515, 660
RsaNI	GTAC	4 cut(s)	91, 418, 514, 659
RseI	CAYNNNNRTG	1 cut(s)	376
SaqAI	TTAA	2 cut(s)	315, 597
SatI	GCNGC	1 cut(s)	613
Sau3AI	GATC	2 cut(s)	444, 487
Sau96I	GGNCC	1 cut(s)	625
SchI	GAGTC	1 cut(s)	171
ScrFI	CCNGG	2 cut(s)	331, 620
SfaNI	GCATC	1 cut(s)	624
SinI	GGWCC	1 cut(s)	625
SmiMI	CAYNNNNRTG	1 cut(s)	376
SmlI	CTYRAG	2 cut(s)	186, 500
SmoI	CTYRAG	2 cut(s)	186, 500
Sse9I	AATT	6 cut(s)	9, 41, 115, 505, 581, 700
SsiI	CCGC	1 cut(s)	410
SspMI	CTAG	3 cut(s)	35, 548, 680
StyD4I	CCNGG	2 cut(s)	329, 618
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	56, 403
TaiI	ACGT	1 cut(s)	417
TaqI	TCGA	4 cut(s)	395, 457, 467, 644
TasI	AATT	6 cut(s)	9, 41, 115, 505, 581, 700
TatI	WGTACW	2 cut(s)	90, 417
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	2 cut(s)	315, 597
Tru9I	TTAA	2 cut(s)	315, 597
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	1 cut(s)	612
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	6 cut(s)	17, 221, 222, 379, 549, 662
TspRI	CASTG	1 cut(s)	408
Van91I	CCANNNNNTGG	1 cut(s)	523
VpaK11BI	GGWCC	1 cut(s)	625
XapI	RAATTY	3 cut(s)	115, 581, 700
XmiI	GTMKAC	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	463
XspI	CTAG	3 cut(s)	35, 548, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.