Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Reverse (-)

40841400 .. 40842659

Gene Structure 1260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG216400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGAAAAACTCAAACATGGCTGCAATTTTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAGTTGCAGCTGCTCAACAAGGAAATATCAGCCTAGGTGCTTCTCTATATCCCAATAACAACTCATATTGGTTATCGAATTCGGGTCAGTTTGCCTTTGGCTTCTACAGGCAAGGAAATGACCTTGCTGTAGGCATCTGGTTTGAGAAAACCATTCCGAAAACAGTCATCTGGACAGCAAATCGTGATGCTGTTAATCAAGAGCCACTACTTAATGATGTTCGATTGACTGTGAGGGACAGTGGAGTTGAGCTCATCTCAACAAGCAAGAGTGCCTTCCTTATACCAATTTTAAATTCTTCCCAGCCTGCTGTCAGGGCCTCCTTGCTTGATTCAGGTAACTTTGTGCTCTACAATTCTGATTCAATCATCATTTTGCAGACTTTTGATGTTCCAACAGATACAATTGTATCCGGGCAGCGTCTGTTGGCTGGAACAAAGCTCATCTCCTCCGTCTCAAACACGAATCACTCAAGTGGAAAGTTTCAATTGATCATGGAGGGAGATGGCAACCTGGTTCAGTATCCAATTGGTCCATTTACAGTGAGTCCTGATCAATATGCTTATTGGAACACTGAGACATTCACAGCAGGGAACAATGCATCCCTCAATCTTGATCAAAATGAGGGGCTCTATCTTCTTAATTCCACCGGTTTCAAGATAAGAAGTTTATTTTCTCTTCAGAATAGCCTTTCTATGAATCGTGGCTATCGTCTCATGATTGATGCTGATGGAATACTCCGGTTGTACTCCTATAGTGTGGGTCAGAATGATTCCTGGTCAATTGAGTGGTCACCACAAAATTTTGATGACTGTGCTCCTCCTGGACTCTGTGGCCTAAATTCTTATTGTGTTCTTGTGGAACAGGAACCTTCTTGTGTATGTCTTCCTGGTTTCGTTTTCATCGACGAGGGCCAAAGATATTTAGGCTGCAAGAGAAACTTGAGTACAGTTGGTTGCAGAGGTGAGAATGAAACTTCATATTCTATTGTTGATGTGGATAACATAGATTGGGAAAACACTCCATACTCTATTCTATCATTGGATAAGACTGCTTGTAAAGAGGACTGTTTGATGGATTGTGACTGTGAAGCTGCGATTTTTAGGGACCAGCAGTGCCGAAAACAAAAGCTCCCTCTAATTTTTGGAAGACACCAATCAAGTGGGAAAAGGAGCTTTTGGGACAGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

419

Amino Acids

46.57

Weight (kDa)

4.77

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	77 - 166	6.8e-10	D-mannose binding lectin
S_locus_glycop	PF00954	247 - 322	2.8e-06	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	4 cut(s)	145, 361, 868, 907
AcuI	CTGAAG	1 cut(s)	731
AfaI	GTAC	2 cut(s)	815, 1015
AgeI	ACCGGT	1 cut(s)	716
AgsI	TTSAA	4 cut(s)	68, 432, 554, 724
AjnI	CCWGG	4 cut(s)	579, 842, 889, 955
AjuI	GAANNNNNNNTTGG	2 cut(s)	346, 378
AleI	CACNNNNGTG	1 cut(s)	540
AloI	GAACNNNNNNTCC	2 cut(s)	653, 685
AluBI	AGCT	6 cut(s)	77, 319, 508, 1160, 1198, 1242
AluI	AGCT	6 cut(s)	77, 319, 508, 1160, 1198, 1242
Alw21I	GWGCWC	3 cut(s)	321, 417, 886
Alw26I	GTCTC	3 cut(s)	526, 638, 785
AlwNI	CAGNNNCTG	1 cut(s)	490
AoxI	GGCC	3 cut(s)	384, 901, 979
ApeKI	GCWGC	6 cut(s)	20, 74, 77, 484, 996, 1160
ApoI	RAATTY	4 cut(s)	145, 361, 868, 907
AsiGI	ACCGGT	1 cut(s)	716
AspA2I	CCTAGG	1 cut(s)	100
AspS9I	GGNCC	4 cut(s)	384, 599, 979, 1174
AsuC2I	CCSGG	1 cut(s)	481
AsuHPI	GGTGA	2 cut(s)	852, 1043
AvaII	GGWCC	2 cut(s)	599, 1174
AvrII	CCTAGG	1 cut(s)	100
BaeI	ACNNNNGTAYC	4 cut(s)	459, 459, 492, 492
BanII	GRGCYC	2 cut(s)	321, 699
BbsI	GAAGAC	2 cut(s)	944, 1222
Bbv12I	GWGCWC	3 cut(s)	321, 417, 886
BbvI	GCAGC	6 cut(s)	7, 64, 86, 496, 983, 1147
BccI	CCATC	3 cut(s)	566, 791, 1135
BciT130I	CCWGG	4 cut(s)	581, 844, 891, 957
BciVI	GTATCC	2 cut(s)	487, 600
BclI	TGATCA	3 cut(s)	558, 619, 682
BcnI	CCSGG	1 cut(s)	481
BcoDI	GTCTC	3 cut(s)	526, 638, 785
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	3 cut(s)	172, 195, 820
BfuI	GTATCC	2 cut(s)	487, 600
BisI	GCNGC	6 cut(s)	21, 75, 78, 485, 997, 1161
BlnI	CCTAGG	1 cut(s)	100
BlsI	GCNGC	6 cut(s)	22, 76, 79, 486, 998, 1162
Bme1390I	CCNGG	5 cut(s)	481, 581, 844, 891, 957
Bme18I	GGWCC	2 cut(s)	599, 1174
BmgT120I	GGNCC	4 cut(s)	384, 599, 979, 1174
BmiI	GGNNCC	2 cut(s)	936, 1175
BmrFI	CCNGG	5 cut(s)	481, 581, 844, 891, 957
BmsI	GCATC	4 cut(s)	210, 244, 677, 781
BpiI	GAAGAC	2 cut(s)	944, 1222
BplI	GAGNNNNNCTC	4 cut(s)	303, 335, 308, 340
BpuEI	CTTGAG	2 cut(s)	523, 1030
BpuMI	CCSGG	1 cut(s)	481
BsaJI	CCNNGG	1 cut(s)	100
BsaWI	WCCGGW	2 cut(s)	716, 807
BsaXI	ACNNNNNCTCC	2 cut(s)	1182, 1212
Bse118I	RCCGGY	1 cut(s)	716
BseBI	CCWGG	4 cut(s)	581, 844, 891, 957
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	668
BseMII	CTCAG	1 cut(s)	633
BseRI	GAGGAG	2 cut(s)	505, 876
BseXI	GCAGC	6 cut(s)	7, 64, 86, 496, 983, 1147
BseYI	CCCAGC	1 cut(s)	369
BshFI	GGCC	3 cut(s)	386, 903, 981
BshTI	ACCGGT	1 cut(s)	716
BsiHKAI	GWGCWC	3 cut(s)	321, 417, 886
BsiSI	CCGG	3 cut(s)	480, 717, 808
BslFI	GGGAC	2 cut(s)	317, 1187
BsmAI	GTCTC	3 cut(s)	526, 638, 785
BsmBI	CGTCTC	2 cut(s)	526, 785
BsmFI	GGGAC	2 cut(s)	317, 1187
BsnI	GGCC	3 cut(s)	386, 903, 981
Bsp1286I	GDGCHC	4 cut(s)	321, 417, 699, 886
Bsp143I	GATC	3 cut(s)	558, 619, 682
BspANI	GGCC	3 cut(s)	386, 903, 981
BspCNI	CTCAG	1 cut(s)	634
BspHI	TCATGA	1 cut(s)	783
BspLI	GGNNCC	2 cut(s)	936, 1175
BsrFI	RCCGGY	1 cut(s)	716
BssAI	RCCGGY	1 cut(s)	716
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	3 cut(s)	558, 619, 682
BssT1I	CCWWGG	1 cut(s)	100
Bst2UI	CCWGG	4 cut(s)	581, 844, 891, 957
Bst4CI	ACNGT	9 cut(s)	232, 298, 308, 610, 881, 1018, 1136, 1154, 1253
Bst6I	CTCTTC	1 cut(s)	750
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	1 cut(s)	642
BstEII	GGTNACC	1 cut(s)	858
BstF5I	GGATG	1 cut(s)	668
BstKTI	GATC	3 cut(s)	561, 622, 685
BstMAI	GTCTC	3 cut(s)	526, 638, 785
BstMBI	GATC	3 cut(s)	558, 619, 682
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNI	CCWGG	4 cut(s)	581, 844, 891, 957
BstPI	GGTNACC	1 cut(s)	858
BstSCI	CCNGG	5 cut(s)	479, 579, 842, 889, 955
BstSFI	CTRYAG	3 cut(s)	172, 195, 820
BstV1I	GCAGC	6 cut(s)	7, 64, 86, 496, 983, 1147
BstV2I	GAAGAC	2 cut(s)	944, 1222
BstXI	CCANNNNNNTGG	1 cut(s)	1229
BsuI	GTATCC	2 cut(s)	487, 600
BsuRI	GGCC	3 cut(s)	386, 903, 981
BtsCI	GGATG	1 cut(s)	668
BtsI	GCAGTG	1 cut(s)	1187
BtsIMutI	CAGTG	4 cut(s)	313, 615, 639, 1187
Cac8I	GCNNGC	1 cut(s)	375
CaiI	CAGNNNCTG	1 cut(s)	490
CciI	TCATGA	1 cut(s)	783
Cfr10I	RCCGGY	1 cut(s)	716
Cfr13I	GGNCC	4 cut(s)	384, 599, 979, 1174
CseI	GACGC	1 cut(s)	476
CsiI	ACCWGGT	1 cut(s)	579
Csp6I	GTAC	2 cut(s)	814, 1014
CspAI	ACCGGT	1 cut(s)	716
CviAII	CATG	3 cut(s)	16, 562, 784
CviQI	GTAC	2 cut(s)	814, 1014
DdeI	CTNAG	1 cut(s)	642
DpnI	GATC	3 cut(s)	560, 621, 684
DpnII	GATC	3 cut(s)	558, 619, 682
DraI	TTTAAA	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	750
EarI	CTCTTC	1 cut(s)	750
Ecl136II	GAGCTC	1 cut(s)	319
Eco130I	CCWWGG	1 cut(s)	100
Eco24I	GRGCYC	2 cut(s)	321, 699
Eco47I	GGWCC	2 cut(s)	599, 1174
Eco53kI	GAGCTC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	731
Eco91I	GGTNACC	1 cut(s)	858
EcoICRI	GAGCTC	1 cut(s)	319
EcoO109I	RGGNCCY	1 cut(s)	384
EcoO65I	GGTNACC	1 cut(s)	858
EcoRI	GAATTC	1 cut(s)	145
EcoRII	CCWGG	4 cut(s)	579, 842, 889, 955
EcoT14I	CCWWGG	1 cut(s)	100
EcoT22I	ATGCAT	1 cut(s)	670
EcoT38I	GRGCYC	2 cut(s)	321, 699
ErhI	CCWWGG	1 cut(s)	100
Esp3I	CGTCTC	2 cut(s)	526, 785
FaeI	CATG	3 cut(s)	19, 565, 787
FalI	AAGNNNNNCTT	4 cut(s)	326, 358, 992, 1024
FaqI	GGGAC	2 cut(s)	317, 1187
FatI	CATG	3 cut(s)	15, 561, 783
FbaI	TGATCA	3 cut(s)	558, 619, 682
Fnu4HI	GCNGC	6 cut(s)	21, 75, 78, 485, 997, 1161
FokI	GGATG	1 cut(s)	655
FriOI	GRGCYC	2 cut(s)	321, 699
Fsp4HI	GCNGC	6 cut(s)	21, 75, 78, 485, 997, 1161
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	6 cut(s)	21, 75, 78, 485, 997, 1161
GsaI	CCCAGC	1 cut(s)	373
HaeIII	GGCC	3 cut(s)	386, 903, 981
HapII	CCGG	3 cut(s)	480, 717, 808
HgaI	GACGC	1 cut(s)	476
Hin1II	CATG	3 cut(s)	19, 565, 787
HinfI	GANTC	7 cut(s)	398, 428, 532, 613, 766, 839, 894
HpaII	CCGG	3 cut(s)	480, 717, 808
HphI	GGTGA	2 cut(s)	852, 1043
Hpy188I	TCNGA	4 cut(s)	225, 427, 750, 834
Hpy188III	TCNNGA	7 cut(s)	238, 251, 266, 617, 680, 724, 784
Hpy99I	CGWCG	1 cut(s)	977
HpyAV	CCTTC	2 cut(s)	352, 948
HpyCH4III	ACNGT	9 cut(s)	232, 298, 308, 610, 881, 1018, 1136, 1154, 1253
HpyCH4V	TGCA	6 cut(s)	23, 74, 445, 668, 999, 1026
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	1 cut(s)	642
Hsp92II	CATG	3 cut(s)	19, 565, 787
Ksp22I	TGATCA	3 cut(s)	558, 619, 682
Kzo9I	GATC	3 cut(s)	558, 619, 682
LmnI	GCTCC	3 cut(s)	889, 1203, 1239
Lsp1109I	GCAGC	6 cut(s)	7, 64, 86, 496, 983, 1147
LweI	GCATC	4 cut(s)	210, 244, 677, 781
MabI	ACCWGGT	1 cut(s)	579
MaeI	CTAG	1 cut(s)	101
MaeIII	GTNAC	3 cut(s)	404, 858, 1148
MalI	GATC	3 cut(s)	560, 621, 684
MboI	GATC	3 cut(s)	558, 619, 682
MfeI	CAATTG	4 cut(s)	471, 554, 594, 849
MhlI	GDGCHC	4 cut(s)	321, 417, 699, 886
MlyI	GAGTC	2 cut(s)	622, 888
MmeI	TCCRAC	1 cut(s)	485
Mph1103I	ATGCAT	1 cut(s)	670
MseI	TTAA	5 cut(s)	261, 279, 359, 708, 1258
MslI	CAYNNNNRTG	1 cut(s)	540
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	3 cut(s)	480, 717, 808
MspR9I	CCNGG	5 cut(s)	481, 581, 844, 891, 957
MunI	CAATTG	4 cut(s)	471, 554, 594, 849
MvaI	CCWGG	4 cut(s)	581, 844, 891, 957
MwoI	GCNNNNNNNGC	1 cut(s)	383
NciI	CCSGG	1 cut(s)	481
NdeII	GATC	3 cut(s)	558, 619, 682
NlaIII	CATG	3 cut(s)	19, 565, 787
NlaIV	GGNNCC	2 cut(s)	936, 1175
NmuCI	GTSAC	2 cut(s)	858, 1148
NsiI	ATGCAT	1 cut(s)	670
OliI	CACNNNNGTG	1 cut(s)	540
PagI	TCATGA	1 cut(s)	783
PcsI	WCGNNNNNNNCGW	2 cut(s)	775, 969
PfeI	GAWTC	5 cut(s)	398, 428, 532, 766, 839
PfoI	TCCNGGA	1 cut(s)	889
PinAI	ACCGGT	1 cut(s)	716
PkrI	GCNGC	6 cut(s)	22, 76, 79, 486, 998, 1162
PleI	GAGTC	2 cut(s)	621, 888
PpsI	GAGTC	2 cut(s)	621, 888
Psp124BI	GAGCTC	1 cut(s)	321
Psp6I	CCWGG	4 cut(s)	579, 842, 889, 955
PspEI	GGTNACC	1 cut(s)	858
PspFI	CCCAGC	1 cut(s)	369
PspGI	CCWGG	4 cut(s)	579, 842, 889, 955
PspN4I	GGNNCC	2 cut(s)	936, 1175
PspPI	GGNCC	4 cut(s)	384, 599, 979, 1174
PstNI	CAGNNNCTG	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	2 cut(s)	815, 1015
RsaNI	GTAC	2 cut(s)	814, 1014
RseI	CAYNNNNRTG	1 cut(s)	540
SacI	GAGCTC	1 cut(s)	321
SaqAI	TTAA	5 cut(s)	261, 279, 359, 708, 1258
SatI	GCNGC	6 cut(s)	21, 75, 78, 485, 997, 1161
Sau3AI	GATC	3 cut(s)	558, 619, 682
Sau96I	GGNCC	4 cut(s)	384, 599, 979, 1174
SchI	GAGTC	2 cut(s)	622, 888
ScrFI	CCNGG	5 cut(s)	481, 581, 844, 891, 957
SduI	GDGCHC	4 cut(s)	321, 417, 699, 886
SexAI	ACCWGGT	1 cut(s)	579
SfaNI	GCATC	4 cut(s)	210, 244, 677, 781
SfcI	CTRYAG	3 cut(s)	172, 195, 820
SinI	GGWCC	2 cut(s)	599, 1174
SmiMI	CAYNNNNRTG	1 cut(s)	540
SmlI	CTYRAG	2 cut(s)	538, 1009
SmoI	CTYRAG	2 cut(s)	538, 1009
SspMI	CTAG	1 cut(s)	101
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	5 cut(s)	479, 579, 842, 889, 955
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	9 cut(s)	232, 298, 308, 610, 881, 1018, 1136, 1154, 1253
TaqI	TCGA	3 cut(s)	143, 289, 972
TatI	WGTACW	2 cut(s)	813, 1013
TfiI	GAWTC	5 cut(s)	398, 428, 532, 766, 839
Tru1I	TTAA	5 cut(s)	261, 279, 359, 708, 1258
Tru9I	TTAA	5 cut(s)	261, 279, 359, 708, 1258
TscAI	CASTG	4 cut(s)	313, 615, 646, 1187
TseFI	GTSAC	2 cut(s)	858, 1148
TseI	GCWGC	6 cut(s)	20, 74, 77, 484, 996, 1160
Tsp45I	GTSAC	2 cut(s)	858, 1148
TspDTI	ATGAA	5 cut(s)	17, 779, 958, 1035, 1053
TspGWI	ACGGA	1 cut(s)	508
TspRI	CASTG	4 cut(s)	313, 615, 646, 1187
VpaK11BI	GGWCC	2 cut(s)	599, 1174
XapI	RAATTY	4 cut(s)	145, 361, 868, 907
XmaJI	CCTAGG	1 cut(s)	100
XspI	CTAG	1 cut(s)	101
Zsp2I	ATGCAT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.