Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Reverse (-)

36323051 .. 36340512

Gene Structure 17462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG218600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGTCAAGAGGCAAGGAAATGACATTGCTGTAGGCATCTGGTTCGAGAAAACCAAACCAAAAACAATCATCTGGACAGCAAATCGTGATGCTGTTAAACAAGAGCCACTTCCTAATGATGTTCAATTGACTGTGAGGGACAGTGGAGTTGAGCTCATCTCAACAAGCAAGAGTGTGTTCCTTATACCAATTTCATATTCTTCCCAGCGTGCTGTCAGGGCCTCCATGCTTGATTTAGTTAACTTTGTGCTCTACAATTTTGATTCAAACATCATGTGGCAGACTTTTGATGTTCCAACAGATACCATTGTATCCGGGCAGCGTCTGTTGGCTGGAACAAAGCTCATCTCCTCCGTCTTGAACATGAATCACGCGAGTGGAAGGTTTCAGGTGATCATGCAGAGTGATGGCAACCTGGTTCGGTATCCAAATATTAGTCCATTTACATTGAGTCCTGATCAATATTATTATTGGAACACTAGGACATTCACAGCAGGGAACAATGTGTCCCTCAATCTTGATCAAAACAAGGGGCTCTATCTTCTTAATTCCACCGGTTTCAAGATAAGTAGTTTATTTTCTCTTCAGAAAGGCCTTTCTATGTATCGTAGCTATCGTTTGACGATTGATGCTGATGGAATACTCCGGTTGTACTCCTATAGTTTGGGTCAGAATTATTCCTGGTCAATTGAGTGGTCACCACCAATTGTTGATAAGTGTGCTCCTCCTGGCCTCTGTGGCCTAAATTCTTACTGTGTTCTTGTGGAACAGGAACCTTCTTGTGTATGTCTCCCTGGTTTCACTTTCATCGACGAGAGCCAAAGATATTTAGGCTGCAACAGAAACTTGAGGACAGTTGGTTGCAAAGGTGAGAATGAAACTTCATATTTTATTGTTGATGTGGATAACATAGATTGGGAAAACACTCCATACTCTATTCTATCATTGGATAAGACTGCTTGTAAAGATGACTGTTTGATGGATTCTAACTGCAAAGCTGCAGTATTTAGGGACCAGCAGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

341

Amino Acids

38.47

Weight (kDa)

5.59

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	22 - 110	8.7e-10	D-mannose binding lectin
S_locus_glycop	PF00954	193 - 268	1.5e-06	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	374
AcsI	RAATTY	1 cut(s)	745
AcuI	CTGAAG	1 cut(s)	569
AfaI	GTAC	1 cut(s)	653
AgeI	ACCGGT	1 cut(s)	554
AgsI	TTSAA	4 cut(s)	125, 267, 361, 562
AjnI	CCWGG	4 cut(s)	414, 680, 727, 793
AjuI	GAANNNNNNNTTGG	2 cut(s)	181, 213
AleI	CACNNNNGTG	1 cut(s)	375
AloI	GAACNNNNNNTCC	2 cut(s)	491, 523
AluBI	AGCT	4 cut(s)	154, 343, 612, 998
AluI	AGCT	4 cut(s)	154, 343, 612, 998
Alw21I	GWGCWC	3 cut(s)	156, 252, 724
Alw26I	GTCTC	1 cut(s)	794
AlwNI	CAGNNNCTG	1 cut(s)	325
AoxI	GGCC	4 cut(s)	219, 592, 730, 739
ApeKI	GCWGC	3 cut(s)	319, 834, 998
ApoI	RAATTY	1 cut(s)	745
AsiGI	ACCGGT	1 cut(s)	554
AspS9I	GGNCC	2 cut(s)	219, 1012
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	3 cut(s)	403, 690, 881
AvaII	GGWCC	1 cut(s)	1012
BaeI	ACNNNNGTAYC	4 cut(s)	294, 294, 327, 327
BanII	GRGCYC	2 cut(s)	156, 537
Bbv12I	GWGCWC	3 cut(s)	156, 252, 724
BbvI	GCAGC	3 cut(s)	331, 821, 985
BccI	CCATC	3 cut(s)	401, 629, 973
BcgI	CGANNNNNNTGC	2 cut(s)	25, 59
BciT130I	CCWGG	4 cut(s)	416, 682, 729, 795
BciVI	GTATCC	2 cut(s)	322, 435
BclI	TGATCA	3 cut(s)	393, 457, 520
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	794
BfaI	CTAG	1 cut(s)	480
BfmI	CTRYAG	3 cut(s)	30, 658, 999
BfuI	GTATCC	2 cut(s)	322, 435
BglI	GCCNNNNNGGC	1 cut(s)	738
BisI	GCNGC	3 cut(s)	320, 835, 999
BlsI	GCNGC	3 cut(s)	321, 836, 1000
Bme1390I	CCNGG	5 cut(s)	316, 416, 682, 729, 795
Bme18I	GGWCC	1 cut(s)	1012
BmgT120I	GGNCC	2 cut(s)	219, 1012
BmiI	GGNNCC	2 cut(s)	774, 1013
BmrFI	CCNGG	5 cut(s)	316, 416, 682, 729, 795
BmsI	GCATC	3 cut(s)	45, 79, 619
BplI	GAGNNNNNCTC	4 cut(s)	138, 170, 143, 175
BpuEI	CTTGAG	1 cut(s)	868
BpuMI	CCSGG	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	793
BsaWI	WCCGGW	2 cut(s)	554, 645
Bse118I	RCCGGY	1 cut(s)	554
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	4 cut(s)	416, 682, 729, 795
BseDI	CCNNGG	1 cut(s)	793
BseMI	GCAATG	1 cut(s)	24
BseRI	GAGGAG	2 cut(s)	340, 714
BseXI	GCAGC	3 cut(s)	331, 821, 985
BseYI	CCCAGC	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	374
BshFI	GGCC	4 cut(s)	221, 594, 732, 741
BshTI	ACCGGT	1 cut(s)	554
BsiHKAI	GWGCWC	3 cut(s)	156, 252, 724
BsiSI	CCGG	3 cut(s)	315, 555, 646
BslFI	GGGAC	2 cut(s)	152, 493
BsmAI	GTCTC	1 cut(s)	794
BsmFI	GGGAC	2 cut(s)	152, 493
BsnI	GGCC	4 cut(s)	221, 594, 732, 741
Bsp1286I	GDGCHC	4 cut(s)	156, 252, 537, 724
Bsp143I	GATC	3 cut(s)	393, 457, 520
BspANI	GGCC	4 cut(s)	221, 594, 732, 741
BspFNI	CGCG	1 cut(s)	374
BspLI	GGNNCC	2 cut(s)	774, 1013
BspMAI	CTGCAG	1 cut(s)	1003
BsrDI	GCAATG	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	554
BssAI	RCCGGY	1 cut(s)	554
BssECI	CCNNGG	1 cut(s)	793
BssMI	GATC	3 cut(s)	393, 457, 520
Bst2UI	CCWGG	4 cut(s)	416, 682, 729, 795
Bst4CI	ACNGT	5 cut(s)	133, 143, 755, 856, 974
Bst6I	CTCTTC	1 cut(s)	588
BstC8I	GCNNGC	1 cut(s)	210
BstEII	GGTNACC	1 cut(s)	696
BstFNI	CGCG	1 cut(s)	374
BstKTI	GATC	3 cut(s)	396, 460, 523
BstMAI	GTCTC	1 cut(s)	794
BstMBI	GATC	3 cut(s)	393, 457, 520
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 738
BstNI	CCWGG	4 cut(s)	416, 682, 729, 795
BstPI	GGTNACC	1 cut(s)	696
BstSCI	CCNGG	5 cut(s)	314, 414, 680, 727, 793
BstSFI	CTRYAG	3 cut(s)	30, 658, 999
BstUI	CGCG	1 cut(s)	374
BstV1I	GCAGC	3 cut(s)	331, 821, 985
BsuI	GTATCC	2 cut(s)	322, 435
BsuRI	GGCC	4 cut(s)	221, 594, 732, 741
BtsI	GCAGTG	1 cut(s)	1025
BtsIMutI	CAGTG	2 cut(s)	148, 1025
Cac8I	GCNNGC	1 cut(s)	210
CaiI	CAGNNNCTG	1 cut(s)	325
Cfr10I	RCCGGY	1 cut(s)	554
Cfr13I	GGNCC	2 cut(s)	219, 1012
CseI	GACGC	1 cut(s)	311
CsiI	ACCWGGT	1 cut(s)	414
Csp6I	GTAC	1 cut(s)	652
CspAI	ACCGGT	1 cut(s)	554
CviAII	CATG	4 cut(s)	226, 274, 364, 397
CviQI	GTAC	1 cut(s)	652
DpnI	GATC	3 cut(s)	395, 459, 522
DpnII	GATC	3 cut(s)	393, 457, 520
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Ecl136II	GAGCTC	1 cut(s)	154
Eco147I	AGGCCT	1 cut(s)	594
Eco24I	GRGCYC	2 cut(s)	156, 537
Eco47I	GGWCC	1 cut(s)	1012
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	569
Eco91I	GGTNACC	1 cut(s)	696
EcoICRI	GAGCTC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	219
EcoO65I	GGTNACC	1 cut(s)	696
EcoRII	CCWGG	4 cut(s)	414, 680, 727, 793
EcoT38I	GRGCYC	2 cut(s)	156, 537
FaeI	CATG	4 cut(s)	229, 277, 367, 400
FalI	AAGNNNNNCTT	2 cut(s)	93, 125
FaqI	GGGAC	2 cut(s)	152, 493
FatI	CATG	4 cut(s)	225, 273, 363, 396
FbaI	TGATCA	3 cut(s)	393, 457, 520
Fnu4HI	GCNGC	3 cut(s)	320, 835, 999
FriOI	GRGCYC	2 cut(s)	156, 537
Fsp4HI	GCNGC	3 cut(s)	320, 835, 999
FspBI	CTAG	1 cut(s)	480
GluI	GCNGC	3 cut(s)	320, 835, 999
GsaI	CCCAGC	1 cut(s)	208
HaeIII	GGCC	4 cut(s)	221, 594, 732, 741
HapII	CCGG	3 cut(s)	315, 555, 646
HgaI	GACGC	1 cut(s)	311
Hin1II	CATG	4 cut(s)	229, 277, 367, 400
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	4 cut(s)	263, 367, 451, 983
HpaI	GTTAAC	1 cut(s)	241
HpaII	CCGG	3 cut(s)	315, 555, 646
HphI	GGTGA	3 cut(s)	403, 690, 881
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	2 cut(s)	588, 672
Hpy188III	TCNNGA	8 cut(s)	7, 46, 73, 86, 358, 455, 518, 562
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	1 cut(s)	815
HpyAV	CCTTC	2 cut(s)	375, 786
HpyCH4III	ACNGT	5 cut(s)	133, 143, 755, 856, 974
HpyCH4V	TGCA	5 cut(s)	400, 837, 864, 993, 1001
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 738
Hsp92II	CATG	4 cut(s)	229, 277, 367, 400
Ksp22I	TGATCA	3 cut(s)	393, 457, 520
KspAI	GTTAAC	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	393, 457, 520
LmnI	GCTCC	1 cut(s)	727
Lsp1109I	GCAGC	3 cut(s)	331, 821, 985
LweI	GCATC	3 cut(s)	45, 79, 619
MabI	ACCWGGT	1 cut(s)	414
MaeI	CTAG	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	696
MalI	GATC	3 cut(s)	395, 459, 522
MboI	GATC	3 cut(s)	393, 457, 520
MboII	GAAGA	3 cut(s)	192, 533, 575
MfeI	CAATTG	3 cut(s)	125, 687, 705
MhlI	GDGCHC	4 cut(s)	156, 252, 537, 724
MluCI	AATT	8 cut(s)	125, 189, 256, 547, 673, 687, 705, 745
MlyI	GAGTC	1 cut(s)	460
MmeI	TCCRAC	1 cut(s)	320
MnlI	CCTC	8 cut(s)	3, 129, 232, 361, 521, 735, 743, 843
MseI	TTAA	3 cut(s)	96, 240, 546
MslI	CAYNNNNRTG	1 cut(s)	375
MspI	CCGG	3 cut(s)	315, 555, 646
MspR9I	CCNGG	5 cut(s)	316, 416, 682, 729, 795
MunI	CAATTG	3 cut(s)	125, 687, 705
MvaI	CCWGG	4 cut(s)	416, 682, 729, 795
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	2 cut(s)	218, 738
NciI	CCSGG	1 cut(s)	316
NdeII	GATC	3 cut(s)	393, 457, 520
NlaIII	CATG	4 cut(s)	229, 277, 367, 400
NlaIV	GGNNCC	2 cut(s)	774, 1013
NmuCI	GTSAC	1 cut(s)	696
OliI	CACNNNNGTG	1 cut(s)	375
PceI	AGGCCT	1 cut(s)	594
PcsI	WCGNNNNNNNCGW	1 cut(s)	613
PfeI	GAWTC	3 cut(s)	263, 367, 983
PinAI	ACCGGT	1 cut(s)	554
PkrI	GCNGC	3 cut(s)	321, 836, 1000
PleI	GAGTC	1 cut(s)	459
PpsI	GAGTC	1 cut(s)	459
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	4 cut(s)	414, 680, 727, 793
PspEI	GGTNACC	1 cut(s)	696
PspFI	CCCAGC	1 cut(s)	204
PspGI	CCWGG	4 cut(s)	414, 680, 727, 793
PspN4I	GGNNCC	2 cut(s)	774, 1013
PspPI	GGNCC	2 cut(s)	219, 1012
PstI	CTGCAG	1 cut(s)	1003
PstNI	CAGNNNCTG	1 cut(s)	325
RsaI	GTAC	1 cut(s)	653
RsaNI	GTAC	1 cut(s)	652
RseI	CAYNNNNRTG	1 cut(s)	375
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	3 cut(s)	96, 240, 546
SatI	GCNGC	3 cut(s)	320, 835, 999
Sau3AI	GATC	3 cut(s)	393, 457, 520
Sau96I	GGNCC	2 cut(s)	219, 1012
SchI	GAGTC	1 cut(s)	460
ScrFI	CCNGG	5 cut(s)	316, 416, 682, 729, 795
SduI	GDGCHC	4 cut(s)	156, 252, 537, 724
SetI	ASST	9 cut(s)	156, 345, 386, 393, 417, 614, 778, 871, 1000
SexAI	ACCWGGT	1 cut(s)	414
SfaNI	GCATC	3 cut(s)	45, 79, 619
SfcI	CTRYAG	3 cut(s)	30, 658, 999
SfiI	GGCCNNNNNGGCC	1 cut(s)	738
SinI	GGWCC	1 cut(s)	1012
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	847
SmoI	CTYRAG	1 cut(s)	847
Sse9I	AATT	8 cut(s)	125, 189, 256, 547, 673, 687, 705, 745
SseBI	AGGCCT	1 cut(s)	594
SspI	AATATT	2 cut(s)	433, 464
SspMI	CTAG	1 cut(s)	480
SstI	GAGCTC	1 cut(s)	156
StuI	AGGCCT	1 cut(s)	594
StyD4I	CCNGG	5 cut(s)	314, 414, 680, 727, 793
TaaI	ACNGT	5 cut(s)	133, 143, 755, 856, 974
TaqI	TCGA	2 cut(s)	45, 810
TasI	AATT	8 cut(s)	125, 189, 256, 547, 673, 687, 705, 745
TatI	WGTACW	1 cut(s)	651
TfiI	GAWTC	3 cut(s)	263, 367, 983
Tru1I	TTAA	3 cut(s)	96, 240, 546
Tru9I	TTAA	3 cut(s)	96, 240, 546
TscAI	CASTG	2 cut(s)	148, 1025
TseFI	GTSAC	1 cut(s)	696
TseI	GCWGC	3 cut(s)	319, 834, 998
Tsp45I	GTSAC	1 cut(s)	696
TspDTI	ATGAA	5 cut(s)	183, 380, 796, 873, 891
TspGWI	ACGGA	1 cut(s)	343
TspRI	CASTG	2 cut(s)	148, 1025
VpaK11BI	GGWCC	1 cut(s)	1012
XapI	RAATTY	1 cut(s)	745
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.