Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Reverse (-)

38447518 .. 38447805

Gene Structure 288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24796

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGATCAAAGTTATATTTATCAGCAACATTGCAACTTTAACTCTTTCACTTGTTATTATGGCACTTACTGGTGTTGTTATATGTAGATATCGTATTTGGGATTACCGAAAAGTTACAAATTCAGCTAGTGAAGAGTTAATTCAAGGTACATATTGTGAACTTGAAAAGGCAACTAAAGGCTTCACCAATCAAGTGGGAAAAGGAGCTTTTGGGACAGTTTTTAAAAGGGTGATTGGTGGGAGAGTAGTGGCAATCAAGCAACTAGAGACAGTGGTGGATGAAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

95

Amino Acids

10.47

Weight (kDa)

9.3

Isoelectric Point (pI)

4.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	118
AfaI	GTAC	1 cut(s)	148
AgsI	TTSAA	2 cut(s)	143, 164
AluBI	AGCT	2 cut(s)	125, 206
AluI	AGCT	2 cut(s)	125, 206
Alw26I	GTCTC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	118
AsuHPI	GGTGA	2 cut(s)	175, 241
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	2 cut(s)	126, 263
Bse1I	ACTGG	1 cut(s)	73
Bse3DI	GCAATG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	3
BsrDI	GCAATG	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	73
BssMI	GATC	1 cut(s)	3
Bst4CI	ACNGT	2 cut(s)	217, 271
Bst6I	CTCTTC	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	1 cut(s)	3
BstXI	CCANNNNNNTGG	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	147
CviJI	RGCY	3 cut(s)	125, 180, 206
CviKI_1	RGCY	3 cut(s)	125, 180, 206
CviQI	GTAC	1 cut(s)	147
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DraI	TTTAAA	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
Eco32I	GATATC	1 cut(s)	89
EcoRV	GATATC	1 cut(s)	89
FaiI	YATR	5 cut(s)	14, 59, 80, 82, 151
FaqI	GGGAC	1 cut(s)	226
FbaI	TGATCA	1 cut(s)	3
FspBI	CTAG	2 cut(s)	126, 263
HphI	GGTGA	2 cut(s)	175, 241
Hpy166II	GTNNAC	1 cut(s)	158
Hpy8I	GTNNAC	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	2 cut(s)	217, 271
HpyCH4V	TGCA	1 cut(s)	32
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	1 cut(s)	54
MaeI	CTAG	2 cut(s)	126, 263
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	143
MluCI	AATT	2 cut(s)	118, 138
MseI	TTAA	3 cut(s)	38, 137, 222
NdeII	GATC	1 cut(s)	3
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SaqAI	TTAA	3 cut(s)	38, 137, 222
Sau3AI	GATC	1 cut(s)	3
SetI	ASST	3 cut(s)	127, 148, 208
SgeI	CNNG	8 cut(s)	62, 81, 138, 155, 173, 203, 268, 275
Sse9I	AATT	2 cut(s)	118, 138
SspMI	CTAG	2 cut(s)	126, 263
TaaI	ACNGT	2 cut(s)	217, 271
TasI	AATT	2 cut(s)	118, 138
Tru1I	TTAA	3 cut(s)	38, 137, 222
Tru9I	TTAA	3 cut(s)	38, 137, 222
TscAI	CASTG	1 cut(s)	276
TspRI	CASTG	1 cut(s)	276
XapI	RAATTY	1 cut(s)	118
XspI	CTAG	2 cut(s)	126, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.