Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Reverse (-)

40863192 .. 40863635

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG216800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCTTGATTCAAGTAACTTTGTGCTCTACAATTCTGATTTAAACATCATTTGGCAGACTTTTGATGTTCCAACAGATACCATTGTATCTGGGCAGCGTCTGTTGGCTGGAACAAAGCTCATCTCCTCCGTCTCGAACAAGAATCACTCAAGTGGAAGGTTTCAACTGATCATGCAGAGAGATGGCAACCTGGTTCAGTATCTAATTGGTCCATTTACAATGAGTCCTGATCAATATGCTTGTTGGAACACTGAGACATTCACAGCAGGGAACAATGTATCCCTCTATCTTGATCAAAATGAGAGGCTCTATCTTCTTATTTCCACCGGTTTCAAGATAAGAAGTTTGTTTTCTCTTCAGAAAGGCTTTTCTATGTATCGTAGCTATCGTCTGACGATTGATGTTGATGGAATACTCTGGTTGTACTCCTACAGTTTGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

147

Amino Acids

16.8

Weight (kDa)

6.54

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	1 cut(s)	425
AgeI	ACCGGT	1 cut(s)	326
AgsI	TTSAA	3 cut(s)	12, 164, 334
AjnI	CCWGG	1 cut(s)	189
AleI	CACNNNNGTG	1 cut(s)	150
AloI	GAACNNNNNNTCC	2 cut(s)	263, 295
AluBI	AGCT	2 cut(s)	118, 384
AluI	AGCT	2 cut(s)	118, 384
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	2 cut(s)	136, 248
AlwNI	CAGNNNCTG	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	94
AsiGI	ACCGGT	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	209
BaeI	ACNNNNGTAYC	4 cut(s)	69, 69, 102, 102
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	2 cut(s)	176, 401
BciT130I	CCWGG	1 cut(s)	191
BciVI	GTATCC	1 cut(s)	289
BclI	TGATCA	3 cut(s)	168, 229, 292
BcoDI	GTCTC	2 cut(s)	136, 248
BfmI	CTRYAG	1 cut(s)	430
BfuI	GTATCC	1 cut(s)	289
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	191
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmrFI	CCNGG	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	133
BsaWI	WCCGGW	1 cut(s)	326
Bse118I	RCCGGY	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	191
BseMII	CTCAG	1 cut(s)	243
BseRI	GAGGAG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	106
BshTI	ACCGGT	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	327
BsmAI	GTCTC	2 cut(s)	136, 248
BsmBI	CGTCTC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	3 cut(s)	168, 229, 292
BspCNI	CTCAG	1 cut(s)	244
BsrFI	RCCGGY	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	326
BssMI	GATC	3 cut(s)	168, 229, 292
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	1 cut(s)	360
BstDEI	CTNAG	1 cut(s)	252
BstKTI	GATC	3 cut(s)	171, 232, 295
BstMAI	GTCTC	2 cut(s)	136, 248
BstMBI	GATC	3 cut(s)	168, 229, 292
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	430
BstV1I	GCAGC	1 cut(s)	106
BsuI	GTATCC	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	249
CaiI	CAGNNNCTG	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	209
CseI	GACGC	1 cut(s)	86
CsiI	ACCWGGT	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	424
CspAI	ACCGGT	1 cut(s)	326
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	5 cut(s)	107, 118, 307, 366, 384
CviKI_1	RGCY	5 cut(s)	107, 118, 307, 366, 384
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	3 cut(s)	170, 231, 294
DpnII	GATC	3 cut(s)	168, 229, 292
DraI	TTTAAA	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	1 cut(s)	175
FaiI	YATR	3 cut(s)	173, 237, 374
FatI	CATG	1 cut(s)	171
FbaI	TGATCA	3 cut(s)	168, 229, 292
Fnu4HI	GCNGC	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	95
GluI	GCNGC	1 cut(s)	95
HapII	CCGG	1 cut(s)	327
HgaI	GACGC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	175
HinfI	GANTC	3 cut(s)	8, 142, 223
HpaII	CCGG	1 cut(s)	327
Hpy188I	TCNGA	3 cut(s)	37, 360, 393
Hpy188III	TCNNGA	4 cut(s)	133, 227, 290, 334
HpyAV	CCTTC	1 cut(s)	150
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4V	TGCA	1 cut(s)	175
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	175
Ksp22I	TGATCA	3 cut(s)	168, 229, 292
Kzo9I	GATC	3 cut(s)	168, 229, 292
LpnPI	CCDG	8 cut(s)	75, 93, 176, 203, 240, 252, 340, 403
Lsp1109I	GCAGC	1 cut(s)	106
MabI	ACCWGGT	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	3 cut(s)	170, 231, 294
MboI	GATC	3 cut(s)	168, 229, 292
MboII	GAAGA	2 cut(s)	305, 347
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	2 cut(s)	31, 204
MlyI	GAGTC	1 cut(s)	232
MmeI	TCCRAC	2 cut(s)	95, 224
MnlI	CCTC	3 cut(s)	136, 293, 297
MseI	TTAA	1 cut(s)	41
MslI	CAYNNNNRTG	1 cut(s)	150
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
NdeII	GATC	3 cut(s)	168, 229, 292
NlaIII	CATG	1 cut(s)	175
OliI	CACNNNNGTG	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	8, 142
PinAI	ACCGGT	1 cut(s)	326
PkrI	GCNGC	1 cut(s)	96
PleI	GAGTC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	209
PstNI	CAGNNNCTG	1 cut(s)	100
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	3 cut(s)	168, 229, 292
Sau96I	GGNCC	1 cut(s)	209
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	4 cut(s)	120, 161, 192, 386
SexAI	ACCWGGT	1 cut(s)	189
SfcI	CTRYAG	1 cut(s)	430
SinI	GGWCC	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	2 cut(s)	31, 204
StyD4I	CCNGG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	434
TaqI	TCGA	1 cut(s)	134
TasI	AATT	2 cut(s)	31, 204
TatI	WGTACW	1 cut(s)	423
TfiI	GAWTC	2 cut(s)	8, 142
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	1 cut(s)	94
TspGWI	ACGGA	1 cut(s)	118
TspRI	CASTG	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.