Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004126.1

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Forward (+)

59082 .. 60311

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004126.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atggctgcaacttttcttttccttcttcttcttcttcaagttgcagctgctcaacaagggaatatcagcctaggtgcttctctatatcccaatcacaactcatattggttattgaattcgggtcagtttggctttggcttctacaggcaaggaaatgaccttgctgtaggcatttggtttgagaaaaccaatctgaaaacagtcatctggacagcaaatcgtgatgctgttaaacaagagccacttcctaatgatgttcaattgactgtgagggacagtggagttgagcttatttcaacaagcaagaatgccttccttataccaatttcaaattcttcccagcctgctgtcagggcctccatgcttgattcaggtaactttgtgctctacaattctgatttaaacatcatttggcagacttttgatgttccaacagataccattgtatccgggcagcgtttgttggctggaacaaagctcatctccttcgtctcaaacacgaatcactcaagtggaaagtttcaactgatcatggaggaagatggcaacctggttcagtatccaattggtccatttacagtgagtcctgatcaatatgcttattggaacactgagacattcacaacagggaacaatttgtactcctatagtttgggtcaaaatcattcctggtcaattgagtggtcaccacaaaattttgatgactgtgctcctcctggactctgtggcctaaattcttattgtgttcttggggaacaggaaccttcttgtgtatgtcttcctggtttcgttttcatcgacgagggccaaagatatttaggctgcaagagaaacttgagtacagttggttgcaaaggtgagaatgaaacttcatattctattgttgatgtggataacatagattgggaaaacactccatactctattctatcattggataagactgcttgtaaacaggactgtttgatggattgtgactgtaaagctgcgatttttagggaccagcagtgcggaaaacaaaagctccctctaatttttggaagaactcgcccaaccaacatggcagtgacaacctttgtcaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

361

Amino Acids

40.08

Weight (kDa)

4.8

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1011
AcsI	RAATTY	4 cut(s)	115, 331, 694, 733
AfaI	GTAC	2 cut(s)	641, 841
AgsI	TTSAA	6 cut(s)	38, 115, 260, 297, 330, 524
AjnI	CCWGG	4 cut(s)	549, 668, 715, 781
AjuI	GAANNNNNNNTTGG	2 cut(s)	316, 348
AleI	CACNNNNGTG	1 cut(s)	510
AluBI	AGCT	5 cut(s)	47, 289, 478, 986, 1024
AluI	AGCT	5 cut(s)	47, 289, 478, 986, 1024
Alw21I	GWGCWC	2 cut(s)	387, 712
Alw26I	GTCTC	2 cut(s)	496, 608
AoxI	GGCC	3 cut(s)	354, 727, 805
ApeKI	GCWGC	6 cut(s)	5, 44, 47, 454, 822, 986
ApoI	RAATTY	4 cut(s)	115, 331, 694, 733
Asp700I	GAANNNNTTC	1 cut(s)	311
AspA2I	CCTAGG	1 cut(s)	70
AspS9I	GGNCC	4 cut(s)	354, 569, 805, 1000
AsuC2I	CCSGG	1 cut(s)	451
AsuHPI	GGTGA	2 cut(s)	678, 869
AvaII	GGWCC	2 cut(s)	569, 1000
AvrII	CCTAGG	1 cut(s)	70
BaeI	ACNNNNGTAYC	4 cut(s)	429, 429, 462, 462
BbsI	GAAGAC	1 cut(s)	770
Bbv12I	GWGCWC	2 cut(s)	387, 712
BbvI	GCAGC	5 cut(s)	34, 56, 466, 809, 973
BccI	CCATC	2 cut(s)	536, 961
BciT130I	CCWGG	4 cut(s)	551, 670, 717, 783
BciVI	GTATCC	2 cut(s)	457, 570
BclI	TGATCA	2 cut(s)	528, 589
BcnI	CCSGG	1 cut(s)	451
BcoDI	GTCTC	2 cut(s)	496, 608
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	3 cut(s)	142, 165, 646
BfuI	GTATCC	2 cut(s)	457, 570
BisI	GCNGC	6 cut(s)	6, 45, 48, 455, 823, 987
BlnI	CCTAGG	1 cut(s)	70
BlsI	GCNGC	6 cut(s)	7, 46, 49, 456, 824, 988
Bme1390I	CCNGG	5 cut(s)	451, 551, 670, 717, 783
Bme18I	GGWCC	2 cut(s)	569, 1000
BmgT120I	GGNCC	4 cut(s)	354, 569, 805, 1000
BmiI	GGNNCC	2 cut(s)	762, 1001
BmrFI	CCNGG	5 cut(s)	451, 551, 670, 717, 783
BmsI	GCATC	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	770
BpuEI	CTTGAG	2 cut(s)	493, 856
BpuMI	CCSGG	1 cut(s)	451
BsaJI	CCNNGG	1 cut(s)	70
BsaXI	ACNNNNNCTCC	2 cut(s)	1008, 1038
BseBI	CCWGG	4 cut(s)	551, 670, 717, 783
BseDI	CCNNGG	1 cut(s)	70
BseMII	CTCAG	1 cut(s)	603
BseRI	GAGGAG	1 cut(s)	702
BseXI	GCAGC	5 cut(s)	34, 56, 466, 809, 973
BseYI	CCCAGC	1 cut(s)	339
BshFI	GGCC	3 cut(s)	356, 729, 807
BsiHKAI	GWGCWC	2 cut(s)	387, 712
BsiSI	CCGG	1 cut(s)	450
BslFI	GGGAC	2 cut(s)	287, 1013
BsmAI	GTCTC	2 cut(s)	496, 608
BsmBI	CGTCTC	1 cut(s)	496
BsmFI	GGGAC	2 cut(s)	287, 1013
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	3 cut(s)	356, 729, 807
Bsp1286I	GDGCHC	2 cut(s)	387, 712
Bsp143I	GATC	2 cut(s)	528, 589
BspACI	CCGC	1 cut(s)	1011
BspANI	GGCC	3 cut(s)	356, 729, 807
BspCNI	CTCAG	1 cut(s)	604
BspLI	GGNNCC	2 cut(s)	762, 1001
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	2 cut(s)	528, 589
BssT1I	CCWWGG	1 cut(s)	70
Bst2UI	CCWGG	4 cut(s)	551, 670, 717, 783
Bst4CI	ACNGT	8 cut(s)	202, 268, 278, 580, 707, 844, 962, 980
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	1 cut(s)	612
BstEII	GGTNACC	1 cut(s)	684
BstKTI	GATC	2 cut(s)	531, 592
BstMAI	GTCTC	2 cut(s)	496, 608
BstMBI	GATC	2 cut(s)	528, 589
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNI	CCWGG	4 cut(s)	551, 670, 717, 783
BstPI	GGTNACC	1 cut(s)	684
BstSCI	CCNGG	5 cut(s)	449, 549, 668, 715, 781
BstSFI	CTRYAG	3 cut(s)	142, 165, 646
BstV1I	GCAGC	5 cut(s)	34, 56, 466, 809, 973
BstV2I	GAAGAC	1 cut(s)	770
BsuI	GTATCC	2 cut(s)	457, 570
BsuRI	GGCC	3 cut(s)	356, 729, 807
BtsI	GCAGTG	2 cut(s)	1013, 1071
BtsIMutI	CAGTG	5 cut(s)	283, 585, 609, 1013, 1071
Cac8I	GCNNGC	1 cut(s)	345
Cfr13I	GGNCC	4 cut(s)	354, 569, 805, 1000
CsiI	ACCWGGT	1 cut(s)	549
Csp6I	GTAC	2 cut(s)	640, 840
CviAII	CATG	3 cut(s)	361, 532, 1060
CviQI	GTAC	2 cut(s)	640, 840
DdeI	CTNAG	1 cut(s)	612
DpnI	GATC	2 cut(s)	530, 591
DpnII	GATC	2 cut(s)	528, 589
DraI	TTTAAA	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	70
Eco47I	GGWCC	2 cut(s)	569, 1000
Eco91I	GGTNACC	1 cut(s)	684
EcoO109I	RGGNCCY	1 cut(s)	354
EcoO65I	GGTNACC	1 cut(s)	684
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	4 cut(s)	549, 668, 715, 781
EcoT14I	CCWWGG	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	70
Esp3I	CGTCTC	1 cut(s)	496
FaeI	CATG	3 cut(s)	364, 535, 1063
FalI	AAGNNNNNCTT	6 cut(s)	228, 260, 296, 328, 818, 850
FaqI	GGGAC	2 cut(s)	287, 1013
FatI	CATG	3 cut(s)	360, 531, 1059
FbaI	TGATCA	2 cut(s)	528, 589
Fnu4HI	GCNGC	6 cut(s)	6, 45, 48, 455, 823, 987
Fsp4HI	GCNGC	6 cut(s)	6, 45, 48, 455, 823, 987
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	6 cut(s)	6, 45, 48, 455, 823, 987
GsaI	CCCAGC	1 cut(s)	343
HaeIII	GGCC	3 cut(s)	356, 729, 807
HapII	CCGG	1 cut(s)	450
Hin1II	CATG	3 cut(s)	364, 535, 1063
HinfI	GANTC	4 cut(s)	368, 502, 583, 720
HpaII	CCGG	1 cut(s)	450
HphI	GGTGA	2 cut(s)	678, 869
Hpy166II	GTNNAC	1 cut(s)	953
Hpy188I	TCNGA	2 cut(s)	195, 397
Hpy188III	TCNNGA	3 cut(s)	208, 221, 587
Hpy8I	GTNNAC	1 cut(s)	953
Hpy99I	CGWCG	1 cut(s)	803
HpyAV	CCTTC	4 cut(s)	32, 322, 496, 774
HpyCH4III	ACNGT	8 cut(s)	202, 268, 278, 580, 707, 844, 962, 980
HpyCH4V	TGCA	4 cut(s)	8, 44, 825, 852
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	1 cut(s)	612
Hsp92II	CATG	3 cut(s)	364, 535, 1063
Ksp22I	TGATCA	2 cut(s)	528, 589
Kzo9I	GATC	2 cut(s)	528, 589
LmnI	GCTCC	2 cut(s)	715, 1029
Lsp1109I	GCAGC	5 cut(s)	34, 56, 466, 809, 973
LweI	GCATC	1 cut(s)	214
MabI	ACCWGGT	1 cut(s)	549
MaeI	CTAG	1 cut(s)	71
MaeIII	GTNAC	4 cut(s)	374, 684, 974, 1066
MalI	GATC	2 cut(s)	530, 591
MboI	GATC	2 cut(s)	528, 589
MboII	GAAGA	8 cut(s)	17, 20, 23, 26, 327, 551, 770, 1053
MfeI	CAATTG	3 cut(s)	260, 564, 675
MhlI	GDGCHC	2 cut(s)	387, 712
MlyI	GAGTC	2 cut(s)	592, 714
MmeI	TCCRAC	1 cut(s)	455
MnlI	CCTC	6 cut(s)	264, 367, 529, 723, 796, 1038
MroXI	GAANNNNTTC	1 cut(s)	311
MseI	TTAA	2 cut(s)	231, 401
MslI	CAYNNNNRTG	2 cut(s)	510, 1064
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	1 cut(s)	450
MspR9I	CCNGG	5 cut(s)	451, 551, 670, 717, 783
MunI	CAATTG	3 cut(s)	260, 564, 675
Mva1269I	GAATGC	1 cut(s)	313
MvaI	CCWGG	4 cut(s)	551, 670, 717, 783
MwoI	GCNNNNNNNGC	1 cut(s)	353
NciI	CCSGG	1 cut(s)	451
NdeII	GATC	2 cut(s)	528, 589
NlaIII	CATG	3 cut(s)	364, 535, 1063
NlaIV	GGNNCC	2 cut(s)	762, 1001
NmuCI	GTSAC	3 cut(s)	684, 974, 1066
OliI	CACNNNNGTG	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	795
PctI	GAATGC	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	311
PfeI	GAWTC	2 cut(s)	368, 502
PfoI	TCCNGGA	1 cut(s)	715
PkrI	GCNGC	6 cut(s)	7, 46, 49, 456, 824, 988
PleI	GAGTC	2 cut(s)	591, 714
PpsI	GAGTC	2 cut(s)	591, 714
Psp6I	CCWGG	4 cut(s)	549, 668, 715, 781
PspEI	GGTNACC	1 cut(s)	684
PspFI	CCCAGC	1 cut(s)	339
PspGI	CCWGG	4 cut(s)	549, 668, 715, 781
PspN4I	GGNNCC	2 cut(s)	762, 1001
PspPI	GGNCC	4 cut(s)	354, 569, 805, 1000
PsrI	GAACNNNNNNTAC	2 cut(s)	623, 655
PvuII	CAGCTG	1 cut(s)	47
RsaI	GTAC	2 cut(s)	641, 841
RsaNI	GTAC	2 cut(s)	640, 840
RseI	CAYNNNNRTG	2 cut(s)	510, 1064
SaqAI	TTAA	2 cut(s)	231, 401
SatI	GCNGC	6 cut(s)	6, 45, 48, 455, 823, 987
Sau3AI	GATC	2 cut(s)	528, 589
Sau96I	GGNCC	4 cut(s)	354, 569, 805, 1000
SchI	GAGTC	2 cut(s)	592, 714
ScrFI	CCNGG	5 cut(s)	451, 551, 670, 717, 783
SduI	GDGCHC	2 cut(s)	387, 712
SexAI	ACCWGGT	1 cut(s)	549
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	3 cut(s)	142, 165, 646
SinI	GGWCC	2 cut(s)	569, 1000
SmiMI	CAYNNNNRTG	2 cut(s)	510, 1064
SmlI	CTYRAG	2 cut(s)	508, 835
SmoI	CTYRAG	2 cut(s)	508, 835
SsiI	CCGC	1 cut(s)	1011
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	5 cut(s)	449, 549, 668, 715, 781
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	8 cut(s)	202, 268, 278, 580, 707, 844, 962, 980
TaqI	TCGA	1 cut(s)	798
TatI	WGTACW	2 cut(s)	639, 839
TfiI	GAWTC	2 cut(s)	368, 502
Tru1I	TTAA	2 cut(s)	231, 401
Tru9I	TTAA	2 cut(s)	231, 401
TscAI	CASTG	5 cut(s)	283, 585, 616, 1013, 1071
TseFI	GTSAC	3 cut(s)	684, 974, 1066
TseI	GCWGC	6 cut(s)	5, 44, 47, 454, 822, 986
Tsp45I	GTSAC	3 cut(s)	684, 974, 1066
TspDTI	ATGAA	3 cut(s)	784, 861, 879
TspRI	CASTG	5 cut(s)	283, 585, 616, 1013, 1071
VpaK11BI	GGWCC	2 cut(s)	569, 1000
XapI	RAATTY	4 cut(s)	115, 331, 694, 733
XmaJI	CCTAGG	1 cut(s)	70
XmnI	GAANNNNTTC	1 cut(s)	311
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.