Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Reverse (-)

40895438 .. 40897947

Gene Structure 2510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG217000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2415 bp

ATGCTTGATACAGGTACCATGCATCTCTTGAAGGATCCAAAGCTATTTTGTATAATAAGCAAGGGTCTCTACAGCATGAAAAACTCAACCATGGCTGCAGTTTTTCTTTTTCATTTCCTTCTTCTTCTTCTTCTTCAAGTTGCAGCTGCTCAACAAGGGAATATCAGCCTAGGTGCTTCTCTATATCCCAATCACAACTCATATTGGTTATCGAATTCGGGTCAGTTTGCCTTTGGCTTCTACAGGCAAGGAAATGACCCTGCTGTAGGCATCTGGTTCGAGAAAACCAATCCGAAAACAATCATCTGGACAGCAAATCGTGATGCTGTTAATCAAGAGCCACTACCTAATGATGTTCGATTGACTGTGAGGGACAGTGGAGTTGAGCTCATTTCAACAAGCAAGAATGCCTTCCATATACCAATTTCAAATTCTTCCCAGCCTGCTGTCAGGGCCTCCATGCTTGATTCAGGTAACTTTGTGCTCTACAATTCTGATTTAAACATCATTTGGCAGACTTTTGATGTTCCAACAGATACCATTGTATCCGGGCAGCGTCTGTTGGCTGGAACAAAGCTCATCTCCTCCGTCTCGAACACGAATCACTCAAGTGGAAGGTTTCAACTGATCATGCAGGGAGATGGCAACCTGGTTCAGTATCCAATTGGTCCATTTACAGTGAGTCCTGATCAATATGCTTATTGGAACACTGAGACAGTCGGAGCTGGGAACAATGCGTCCCTCAATCTTGATCAAAATGAGGGGCTCTATCTTCTTAATTCCACCGGTTTCAAGATAAGAAGTTTATTTTCTCTTCAGAAAGGCCTTTCTATGTATCGTAGCTATCGTCTGACGATTGATGCTGATGGAATACTCCGGTTGTACTCCTATAGTTTGGGTCAGAATGATTCCTGGTCAATTAAGTGGTCACCACAAATTGTTGATGACTGTGCTCCTCCTGGACTCTGTGGCCTAAATTCTTATTGTGTTCTTGGGGAACAGGAACCTTCTTGTGTATGTCTTCCTGGTTTCTTTTTCATCGACGAGGGCCAAAGATATTTAGGCTGCAAGAGAAACTTGAGTACAGTTGGTTGCAAAGGTGAGAATGAAACTTCATATTCTATTGTTGATGTGGATAACATAGATTGGGAAAACACTCCATACTCTATTCTATCATTGGATAAGACTGCTTGTAAAAAGGACTGTTTGATGGATTGTGACTGTGAAGCTGCGATATTTAGGGACCAGCAGTGCAGAAAACAAAAGCTCCCTCTAATTTTTGGAAGAACTCGCCCAACCAAAATGGCGGTGACAACCTTTGTCAAAAAGGGTTCCGACACAAAAAGGGCGAGCAAGGGAAGAAAAAATGTCGACATAGTCATATTTATTAGCATCATTGCAACTTTAACTTTTTTACTTATTATTTTGGCAATTACTGGTATTGTTATATATAGATATCGTGTTTGGGATTACCGAAAGGTTACCAATCCAGCTGGTGAAGGGTTAATTGAAGGTGTTACATTGCGGTCATATACATATTGTGAACTTGAAAAGGCAACCAAAGGCTTCACCAATCAAGTGGGAAAAGGAGCTTTTGGGACAGTTTTTAAAGGGGTGATTGGTGGGAGAGAAGTGGCAATCAAGCAACTAGAGACAGTGGTGGATGAAGGAGAGCGAGAGTTTCGTAATGAGATGAATGCAATTGGGAGAACTCATCACAAGAATCTAGTGAAATTGCTTGGCTACTGTCATGATGGAACAAATAGGCTTCTGGTTTACGAGTACATGACCAACGGCTCACTTGCGAAATACTTTTTCAATTCTTATGGTGGAAGGCCAACTTGGGAGGAAAGAGTCAGTGTAGCCCTCAATGTAGCTCAAGGTATACTATATCTACATGAAGACTGTGAGACACAAATCATTCATTGTGACATCAAACCAGAAAATATACTGATGAGCGAGCAGAAATGTGCAAAGCTTGCTGATTTTGGATTAGCCAAACTGTTGAAAGCCGACCAATCAAGGACATACACTGGCTTCAGAGGAACCAGGGGTTACGTTGCACCTGAGTGGCACAGGAACATGTCGATAACAGTGAAAGTGGACGTGTACAGCTTCGGGATTGTACTGTTGGAGATTATATGCTGTCAGAGAGGTTCGACCATGGACATACCTGAGGATCTATTAACTCTTGAGAATTGGATGTACCATTGTTTGGAGGCCAATGAACTGGATAAGCTAGTGAAGGATGATGATGAGATTGACACTAGTAAACTACGGGAGATGGTTAAGCTTGGTCTTTGTTGCATTCAGGAGGAGCCATCATTGCGCCCTTCGATGAAGAAGGTGGTACTAATGCTGGAAGGGATTCTAGAGATCCCATCCCCTCCAAATTCTTTCAGTTCCAGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

804

Amino Acids

90.09

Weight (kDa)

6.69

Isoelectric Point (pI)

28.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	100 - 189	8.8e-12	D-mannose binding lectin
PK_Tyr_Ser-Thr	PF07714	524 - 785	1.3e-46	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	525 - 784	1.6e-47	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	14
AccB1I	GGYRCC	1 cut(s)	14
AccB7I	CCANNNNNTGG	1 cut(s)	2215
AccI	GTMKAC	2 cut(s)	1371, 1885
AciI	CCGC	2 cut(s)	1307, 1525
AclWI	GGATC	4 cut(s)	29, 42, 2187, 2371
AcsI	RAATTY	4 cut(s)	214, 430, 976, 2392
AcuI	CTGAAG	2 cut(s)	800, 2023
AfaI	GTAC	8 cut(s)	16, 884, 1084, 1784, 2111, 2127, 2207, 2352
AfiI	CCNNNNNNNGG	2 cut(s)	266, 2215
AflIII	ACRYGT	2 cut(s)	2082, 2106
AgeI	ACCGGT	1 cut(s)	785
AhlI	ACTAGT	1 cut(s)	2267
AjiI	CACGTC	1 cut(s)	2107
AjnI	CCWGG	5 cut(s)	648, 911, 958, 1024, 2048
AjuI	GAANNNNNNNTTGG	4 cut(s)	415, 447, 1825, 1857
AleI	CACNNNNGTG	2 cut(s)	609, 2068
AloI	GAACNNNNNNTCC	2 cut(s)	722, 754
Alw21I	GWGCWC	3 cut(s)	390, 486, 955
Alw26I	GTCTC	5 cut(s)	71, 595, 707, 1646, 1904
AlwI	GGATC	4 cut(s)	29, 42, 2187, 2371
AlwNI	CAGNNNCTG	1 cut(s)	559
AoxI	GGCC	6 cut(s)	453, 823, 970, 1048, 1835, 2220
ApeKI	GCWGC	6 cut(s)	95, 143, 146, 553, 1065, 1229
ApoI	RAATTY	4 cut(s)	214, 430, 976, 2392
AsiGI	ACCGGT	1 cut(s)	785
Asp700I	GAANNNNTTC	2 cut(s)	410, 2367
Asp718I	GGTACC	1 cut(s)	14
AspA2I	CCTAGG	1 cut(s)	169
AspLEI	GCGC	1 cut(s)	2331
AspS9I	GGNCC	4 cut(s)	453, 668, 1048, 1243
AsuC2I	CCSGG	1 cut(s)	550
AsuHPI	GGTGA	6 cut(s)	921, 1112, 1321, 1508, 1561, 1627
AvaII	GGWCC	2 cut(s)	668, 1243
AvrII	CCTAGG	1 cut(s)	169
AxyI	CCTNAGG	1 cut(s)	2175
BaeI	ACNNNNGTAYC	4 cut(s)	528, 528, 561, 561
BamHI	GGATCC	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	2 cut(s)	390, 768
BbsI	GAAGAC	2 cut(s)	1013, 1908
Bbv12I	GWGCWC	3 cut(s)	390, 486, 955
BbvI	GCAGC	6 cut(s)	82, 133, 155, 565, 1052, 1216
BccI	CCATC	7 cut(s)	635, 860, 1204, 1748, 2278, 2329, 2389
BceAI	ACGGC	1 cut(s)	1810
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BciT130I	CCWGG	5 cut(s)	650, 913, 960, 1026, 2050
BciVI	GTATCC	2 cut(s)	556, 669
BclI	TGATCA	3 cut(s)	627, 688, 751
BcnI	CCSGG	1 cut(s)	550
BcoDI	GTCTC	5 cut(s)	71, 595, 707, 1646, 1904
BcuI	ACTAGT	1 cut(s)	2267
BfaI	CTAG	6 cut(s)	170, 1649, 1727, 2240, 2268, 2372
BfmI	CTRYAG	5 cut(s)	70, 96, 241, 264, 889
BfuI	GTATCC	2 cut(s)	556, 669
BisI	GCNGC	6 cut(s)	96, 144, 147, 554, 1066, 1230
BlnI	CCTAGG	1 cut(s)	169
BlsI	GCNGC	6 cut(s)	97, 145, 148, 555, 1067, 1231
Bme1390I	CCNGG	6 cut(s)	550, 650, 913, 960, 1026, 2050
Bme18I	GGWCC	2 cut(s)	668, 1243
BmgBI	CACGTC	1 cut(s)	2107
BmgT120I	GGNCC	4 cut(s)	453, 668, 1048, 1243
BmiI	GGNNCC	7 cut(s)	16, 36, 1005, 1244, 1333, 2047, 2319
BmrFI	CCNGG	6 cut(s)	550, 650, 913, 960, 1026, 2050
BmsI	GCATC	5 cut(s)	31, 279, 313, 850, 1401
BpiI	GAAGAC	2 cut(s)	1013, 1908
BplI	GAGNNNNNCTC	2 cut(s)	372, 404
BpuEI	CTTGAG	4 cut(s)	592, 1099, 1863, 2213
BpuMI	CCSGG	1 cut(s)	550
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	4 cut(s)	90, 169, 2049, 2163
BsaWI	WCCGGW	2 cut(s)	785, 876
BsaXI	ACNNNNNCTCC	2 cut(s)	1251, 1281
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 2215
Bse118I	RCCGGY	1 cut(s)	785
Bse1I	ACTGG	3 cut(s)	1441, 2038, 2235
Bse21I	CCTNAGG	1 cut(s)	2175
Bse3DI	GCAATG	3 cut(s)	1395, 1520, 2324
BseBI	CCWGG	5 cut(s)	650, 913, 960, 1026, 2050
BseDI	CCNNGG	4 cut(s)	90, 169, 2049, 2163
BseGI	GGATG	4 cut(s)	1669, 2208, 2254, 2381
BseLI	CCNNNNNNNGG	2 cut(s)	266, 2215
BseMI	GCAATG	3 cut(s)	1395, 1520, 2324
BseMII	CTCAG	3 cut(s)	702, 2058, 2166
BseNI	ACTGG	3 cut(s)	1441, 2038, 2235
BseRI	GAGGAG	3 cut(s)	574, 945, 2330
BseXI	GCAGC	6 cut(s)	82, 133, 155, 565, 1052, 1216
BseYI	CCCAGC	2 cut(s)	438, 725
BsgI	GTGCAG	1 cut(s)	1273
BshFI	GGCC	6 cut(s)	455, 825, 972, 1050, 1837, 2222
BshNI	GGYRCC	1 cut(s)	14
BshTI	ACCGGT	1 cut(s)	785
BsiHKAI	GWGCWC	3 cut(s)	390, 486, 955
BsiSI	CCGG	3 cut(s)	549, 786, 877
BslFI	GGGAC	4 cut(s)	386, 724, 1256, 1612
BslI	CCNNNNNNNGG	2 cut(s)	266, 2215
BsmAI	GTCTC	5 cut(s)	71, 595, 707, 1646, 1904
BsmBI	CGTCTC	1 cut(s)	595
BsmFI	GGGAC	4 cut(s)	386, 724, 1256, 1612
BsmI	GAATGC	3 cut(s)	412, 1702, 2307
BsnI	GGCC	6 cut(s)	455, 825, 972, 1050, 1837, 2222
Bso31I	GGTCTC	1 cut(s)	71
Bsp1286I	GDGCHC	4 cut(s)	390, 486, 768, 955
Bsp1407I	TGTACA	1 cut(s)	2109
Bsp143I	GATC	6 cut(s)	34, 627, 688, 751, 2179, 2376
Bsp19I	CCATGG	2 cut(s)	90, 2163
BspACI	CCGC	2 cut(s)	1307, 1525
BspANI	GGCC	6 cut(s)	455, 825, 972, 1050, 1837, 2222
BspCNI	CTCAG	3 cut(s)	703, 2059, 2167
BspHI	TCATGA	1 cut(s)	1750
BspLI	GGNNCC	7 cut(s)	16, 36, 1005, 1244, 1333, 2047, 2319
BspMAI	CTGCAG	1 cut(s)	100
BspPI	GGATC	4 cut(s)	29, 42, 2187, 2371
BspT107I	GGYRCC	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	71
BsrDI	GCAATG	3 cut(s)	1395, 1520, 2324
BsrFI	RCCGGY	1 cut(s)	785
BsrGI	TGTACA	1 cut(s)	2109
BsrI	ACTGG	3 cut(s)	1441, 2038, 2235
BssAI	RCCGGY	1 cut(s)	785
BssECI	CCNNGG	4 cut(s)	90, 169, 2049, 2163
BssMI	GATC	6 cut(s)	34, 627, 688, 751, 2179, 2376
BssNAI	GTATAC	1 cut(s)	1886
BssT1I	CCWWGG	3 cut(s)	90, 169, 2163
Bst1107I	GTATAC	1 cut(s)	1886
Bst2UI	CCWGG	5 cut(s)	650, 913, 960, 1026, 2050
Bst6I	CTCTTC	1 cut(s)	819
BstAPI	GCANNNNNTGC	1 cut(s)	1979
BstAUI	TGTACA	1 cut(s)	2109
BstC8I	GCNNGC	4 cut(s)	444, 1351, 1961, 1980
BstDEI	CTNAG	3 cut(s)	711, 2067, 2175
BstDSI	CCRYGG	2 cut(s)	90, 2163
BstEII	GGTNACC	2 cut(s)	927, 1480
BstENI	CCTNNNNNAGG	1 cut(s)	264
BstF5I	GGATG	4 cut(s)	1669, 2208, 2254, 2381
BstHHI	GCGC	1 cut(s)	2331
BstKTI	GATC	6 cut(s)	37, 630, 691, 754, 2182, 2379
BstMAI	GTCTC	5 cut(s)	71, 595, 707, 1646, 1904
BstMBI	GATC	6 cut(s)	34, 627, 688, 751, 2179, 2376
BstMWI	GCNNNNNNNGC	3 cut(s)	452, 1979, 2326
BstNI	CCWGG	5 cut(s)	650, 913, 960, 1026, 2050
BstNSI	RCATGY	1 cut(s)	2086
BstPI	GGTNACC	2 cut(s)	927, 1480
BstSCI	CCNGG	6 cut(s)	548, 648, 911, 958, 1024, 2048
BstSFI	CTRYAG	5 cut(s)	70, 96, 241, 264, 889
BstV1I	GCAGC	6 cut(s)	82, 133, 155, 565, 1052, 1216
BstV2I	GAAGAC	2 cut(s)	1013, 1908
BstX2I	RGATCY	3 cut(s)	34, 2179, 2376
BstXI	CCANNNNNNTGG	2 cut(s)	1579, 2230
BstYI	RGATCY	3 cut(s)	34, 2179, 2376
BstZ17I	GTATAC	1 cut(s)	1886
Bsu36I	CCTNAGG	1 cut(s)	2175
BsuI	GTATCC	2 cut(s)	556, 669
BsuRI	GGCC	6 cut(s)	455, 825, 972, 1050, 1837, 2222
BtgI	CCRYGG	2 cut(s)	90, 2163
BtrI	CACGTC	1 cut(s)	2107
BtsCI	GGATG	4 cut(s)	1669, 2208, 2254, 2381
BtsI	GCAGTG	1 cut(s)	1256
BtsIMutI	CAGTG	8 cut(s)	382, 684, 708, 1256, 1662, 1864, 2031, 2100
Cac8I	GCNNGC	4 cut(s)	444, 1351, 1961, 1980
CaiI	CAGNNNCTG	1 cut(s)	559
CciI	TCATGA	1 cut(s)	1750
CfoI	GCGC	1 cut(s)	2331
Cfr10I	RCCGGY	1 cut(s)	785
Cfr13I	GGNCC	4 cut(s)	453, 668, 1048, 1243
CseI	GACGC	2 cut(s)	545, 726
CsiI	ACCWGGT	1 cut(s)	648
Csp6I	GTAC	8 cut(s)	15, 883, 1083, 1783, 2110, 2126, 2206, 2351
CspAI	ACCGGT	1 cut(s)	785
CviQI	GTAC	8 cut(s)	15, 883, 1083, 1783, 2110, 2126, 2206, 2351
DdeI	CTNAG	3 cut(s)	711, 2067, 2175
DpnI	GATC	6 cut(s)	36, 629, 690, 753, 2181, 2378
DpnII	GATC	6 cut(s)	34, 627, 688, 751, 2179, 2376
DraI	TTTAAA	2 cut(s)	501, 1609
Eam1104I	CTCTTC	1 cut(s)	819
EarI	CTCTTC	1 cut(s)	819
Ecl136II	GAGCTC	1 cut(s)	388
Eco130I	CCWWGG	3 cut(s)	90, 169, 2163
Eco147I	AGGCCT	1 cut(s)	825
Eco24I	GRGCYC	2 cut(s)	390, 768
Eco31I	GGTCTC	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	1457
Eco47I	GGWCC	2 cut(s)	668, 1243
Eco53kI	GAGCTC	1 cut(s)	388
Eco57I	CTGAAG	2 cut(s)	800, 2023
Eco81I	CCTNAGG	1 cut(s)	2175
Eco91I	GGTNACC	2 cut(s)	927, 1480
EcoICRI	GAGCTC	1 cut(s)	388
EcoNI	CCTNNNNNAGG	1 cut(s)	264
EcoO109I	RGGNCCY	1 cut(s)	453
EcoO65I	GGTNACC	2 cut(s)	927, 1480
EcoRI	GAATTC	1 cut(s)	214
EcoRII	CCWGG	5 cut(s)	648, 911, 958, 1024, 2048
EcoRV	GATATC	1 cut(s)	1457
EcoT14I	CCWWGG	3 cut(s)	90, 169, 2163
EcoT22I	ATGCAT	1 cut(s)	24
EcoT38I	GRGCYC	2 cut(s)	390, 768
ErhI	CCWWGG	3 cut(s)	90, 169, 2163
Esp3I	CGTCTC	1 cut(s)	595
FalI	AAGNNNNNCTT	6 cut(s)	395, 427, 1061, 1093, 1825, 1857
FaqI	GGGAC	4 cut(s)	386, 724, 1256, 1612
FbaI	TGATCA	3 cut(s)	627, 688, 751
FblI	GTMKAC	2 cut(s)	1371, 1885
Fnu4HI	GCNGC	6 cut(s)	96, 144, 147, 554, 1066, 1230
FokI	GGATG	4 cut(s)	1676, 2215, 2261, 2368
FriOI	GRGCYC	2 cut(s)	390, 768
Fsp4HI	GCNGC	6 cut(s)	96, 144, 147, 554, 1066, 1230
FspBI	CTAG	6 cut(s)	170, 1649, 1727, 2240, 2268, 2372
GlaI	GCGC	1 cut(s)	2330
GluI	GCNGC	6 cut(s)	96, 144, 147, 554, 1066, 1230
GsaI	CCCAGC	2 cut(s)	442, 729
HaeIII	GGCC	6 cut(s)	455, 825, 972, 1050, 1837, 2222
HapII	CCGG	3 cut(s)	549, 786, 877
HgaI	GACGC	2 cut(s)	545, 726
HhaI	GCGC	1 cut(s)	2331
Hin6I	GCGC	1 cut(s)	2329
HinP1I	GCGC	1 cut(s)	2329
HincII	GTYRAC	1 cut(s)	1372
HindII	GTYRAC	1 cut(s)	1372
HindIII	AAGCTT	2 cut(s)	1976, 2291
HinfI	GANTC	8 cut(s)	467, 601, 682, 908, 963, 1723, 1854, 2368
HpaII	CCGG	3 cut(s)	549, 786, 877
HphI	GGTGA	6 cut(s)	921, 1112, 1321, 1508, 1561, 1627
Hpy166II	GTNNAC	7 cut(s)	1372, 1544, 1777, 1886, 2104, 2110, 2273
Hpy188I	TCNGA	9 cut(s)	294, 496, 722, 819, 852, 903, 1336, 2042, 2151
Hpy8I	GTNNAC	7 cut(s)	1372, 1544, 1777, 1886, 2104, 2110, 2273
Hpy99I	CGWCG	1 cut(s)	1046
HpyCH4IV	ACGT	2 cut(s)	2058, 2106
HpyF10VI	GCNNNNNNNGC	3 cut(s)	452, 1979, 2326
HpyF3I	CTNAG	3 cut(s)	711, 2067, 2175
HpySE526I	ACGT	2 cut(s)	2058, 2106
HspAI	GCGC	1 cut(s)	2329
KpnI	GGTACC	1 cut(s)	18
Ksp22I	TGATCA	3 cut(s)	627, 688, 751
Kzo9I	GATC	6 cut(s)	34, 627, 688, 751, 2179, 2376
LmnI	GCTCC	5 cut(s)	722, 958, 1272, 1589, 2317
Lsp1109I	GCAGC	6 cut(s)	82, 133, 155, 565, 1052, 1216
LweI	GCATC	5 cut(s)	31, 279, 313, 850, 1401
MabI	ACCWGGT	1 cut(s)	648
MaeI	CTAG	6 cut(s)	170, 1649, 1727, 2240, 2268, 2372
MaeII	ACGT	2 cut(s)	2058, 2106
MaeIII	GTNAC	8 cut(s)	473, 927, 1217, 1309, 1480, 1516, 1928, 2054
MalI	GATC	6 cut(s)	36, 629, 690, 753, 2181, 2378
MboI	GATC	6 cut(s)	34, 627, 688, 751, 2179, 2376
MfeI	CAATTG	2 cut(s)	663, 1701
MflI	RGATCY	3 cut(s)	34, 2179, 2376
MhlI	GDGCHC	4 cut(s)	390, 486, 768, 955
MlyI	GAGTC	3 cut(s)	691, 957, 1863
MmeI	TCCRAC	4 cut(s)	554, 700, 1359, 2112
Mph1103I	ATGCAT	1 cut(s)	24
MroXI	GAANNNNTTC	2 cut(s)	410, 2367
MseI	TTAA	9 cut(s)	330, 500, 777, 921, 1406, 1505, 1608, 2186, 2289
MslI	CAYNNNNRTG	2 cut(s)	609, 2068
MspA1I	CMGCKG	2 cut(s)	146, 1493
MspI	CCGG	3 cut(s)	549, 786, 877
MspR9I	CCNGG	6 cut(s)	550, 650, 913, 960, 1026, 2050
MunI	CAATTG	2 cut(s)	663, 1701
Mva1269I	GAATGC	3 cut(s)	412, 1702, 2307
MvaI	CCWGG	5 cut(s)	650, 913, 960, 1026, 2050
MwoI	GCNNNNNNNGC	3 cut(s)	452, 1979, 2326
NciI	CCSGG	1 cut(s)	550
NcoI	CCATGG	2 cut(s)	90, 2163
NdeII	GATC	6 cut(s)	34, 627, 688, 751, 2179, 2376
NlaIV	GGNNCC	7 cut(s)	16, 36, 1005, 1244, 1333, 2047, 2319
NmuCI	GTSAC	4 cut(s)	927, 1217, 1309, 1928
NsiI	ATGCAT	1 cut(s)	24
NspI	RCATGY	1 cut(s)	2086
OliI	CACNNNNGTG	2 cut(s)	609, 2068
PagI	TCATGA	1 cut(s)	1750
PceI	AGGCCT	1 cut(s)	825
PciI	ACATGT	1 cut(s)	2082
PcsI	WCGNNNNNNNCGW	1 cut(s)	844
PctI	GAATGC	3 cut(s)	412, 1702, 2307
PdmI	GAANNNNTTC	2 cut(s)	410, 2367
PfeI	GAWTC	5 cut(s)	467, 601, 908, 1723, 2368
PflFI	GACNNNGTC	1 cut(s)	1376
PflMI	CCANNNNNTGG	1 cut(s)	2215
PfoI	TCCNGGA	1 cut(s)	958
PinAI	ACCGGT	1 cut(s)	785
PkrI	GCNGC	6 cut(s)	97, 145, 148, 555, 1067, 1231
PleI	GAGTC	3 cut(s)	690, 957, 1862
PpsI	GAGTC	3 cut(s)	690, 957, 1862
PscI	ACATGT	1 cut(s)	2082
Psp124BI	GAGCTC	1 cut(s)	390
Psp6I	CCWGG	5 cut(s)	648, 911, 958, 1024, 2048
PspEI	GGTNACC	2 cut(s)	927, 1480
PspFI	CCCAGC	2 cut(s)	438, 725
PspGI	CCWGG	5 cut(s)	648, 911, 958, 1024, 2048
PspN4I	GGNNCC	7 cut(s)	16, 36, 1005, 1244, 1333, 2047, 2319
PspPI	GGNCC	4 cut(s)	453, 668, 1048, 1243
PstI	CTGCAG	1 cut(s)	100
PstNI	CAGNNNCTG	1 cut(s)	559
PsuI	RGATCY	3 cut(s)	34, 2179, 2376
PsyI	GACNNNGTC	1 cut(s)	1376
PvuII	CAGCTG	2 cut(s)	146, 1493
RsaI	GTAC	8 cut(s)	16, 884, 1084, 1784, 2111, 2127, 2207, 2352
RsaNI	GTAC	8 cut(s)	15, 883, 1083, 1783, 2110, 2126, 2206, 2351
RseI	CAYNNNNRTG	2 cut(s)	609, 2068
SacI	GAGCTC	1 cut(s)	390
SalI	GTCGAC	1 cut(s)	1370
SaqAI	TTAA	9 cut(s)	330, 500, 777, 921, 1406, 1505, 1608, 2186, 2289
SatI	GCNGC	6 cut(s)	96, 144, 147, 554, 1066, 1230
Sau3AI	GATC	6 cut(s)	34, 627, 688, 751, 2179, 2376
Sau96I	GGNCC	4 cut(s)	453, 668, 1048, 1243
SchI	GAGTC	3 cut(s)	691, 957, 1863
ScrFI	CCNGG	6 cut(s)	550, 650, 913, 960, 1026, 2050
SduI	GDGCHC	4 cut(s)	390, 486, 768, 955
SexAI	ACCWGGT	1 cut(s)	648
SfaNI	GCATC	5 cut(s)	31, 279, 313, 850, 1401
SfcI	CTRYAG	5 cut(s)	70, 96, 241, 264, 889
SinI	GGWCC	2 cut(s)	668, 1243
SmiMI	CAYNNNNRTG	2 cut(s)	609, 2068
SmlI	CTYRAG	4 cut(s)	607, 1078, 1878, 2192
SmoI	CTYRAG	4 cut(s)	607, 1078, 1878, 2192
SpeI	ACTAGT	1 cut(s)	2267
SseBI	AGGCCT	1 cut(s)	825
SsiI	CCGC	2 cut(s)	1307, 1525
SspMI	CTAG	6 cut(s)	170, 1649, 1727, 2240, 2268, 2372
SstI	GAGCTC	1 cut(s)	390
StuI	AGGCCT	1 cut(s)	825
StyD4I	CCNGG	6 cut(s)	548, 648, 911, 958, 1024, 2048
StyI	CCWWGG	3 cut(s)	90, 169, 2163
TaiI	ACGT	2 cut(s)	2061, 2109
TaqI	TCGA	9 cut(s)	212, 279, 358, 593, 1041, 1371, 2087, 2159, 2336
TatI	WGTACW	5 cut(s)	882, 1082, 1782, 2109, 2125
TfiI	GAWTC	5 cut(s)	467, 601, 908, 1723, 2368
Tru1I	TTAA	9 cut(s)	330, 500, 777, 921, 1406, 1505, 1608, 2186, 2289
Tru9I	TTAA	9 cut(s)	330, 500, 777, 921, 1406, 1505, 1608, 2186, 2289
TscAI	CASTG	8 cut(s)	382, 684, 715, 1256, 1662, 1864, 2038, 2100
TseFI	GTSAC	4 cut(s)	927, 1217, 1309, 1928
TseI	GCWGC	6 cut(s)	95, 143, 146, 553, 1065, 1229
Tsp45I	GTSAC	4 cut(s)	927, 1217, 1309, 1928
TspGWI	ACGGA	1 cut(s)	577
TspRI	CASTG	8 cut(s)	382, 684, 715, 1256, 1662, 1864, 2038, 2100
Tth111I	GACNNNGTC	1 cut(s)	1376
Van91I	CCANNNNNTGG	1 cut(s)	2215
VpaK11BI	GGWCC	2 cut(s)	668, 1243
XagI	CCTNNNNNAGG	1 cut(s)	264
XapI	RAATTY	4 cut(s)	214, 430, 976, 2392
XbaI	TCTAGA	1 cut(s)	2371
XceI	RCATGY	1 cut(s)	2086
XmaJI	CCTAGG	1 cut(s)	169
XmiI	GTMKAC	2 cut(s)	1371, 1885
XmnI	GAANNNNTTC	2 cut(s)	410, 2367
XspI	CTAG	6 cut(s)	170, 1649, 1727, 2240, 2268, 2372
Zsp2I	ATGCAT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.