Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8365989.1

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Forward (+)

11 .. 1101

Gene Structure 1091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8365989.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1091 bp

atgcttgattcaggtaactttgtcctctacaattctgattcaaacatcatttggcagacttctgatgttcctacagataccattgtattcgggcagcatctttcggctggaaaaaagctcatctcctccatctcgaacacgaatcactcaagtggaaggtttcaagtgatcatgcagagagatggcaacctggttcagtatccaattggtccatttacattgagtcctagtaaatattcgtattggaacactgggacattcagagctgggaacaatgtgtccctcaatcttgatcaaaatggagggctctatcttcttaattccaccggtttcaagataaaaagttttcctcttaagaatagcctttctatgaatcgtggctatcgtctcacgattgatgctgatggaatactccggttgtactccaacagtttggttctgaatgattcctgggcaattgagtggtcaccagcagttgataagtgtgctcctcttggcctctgtggcctaaattcttattgtgttcttgtggaacaggaaccttcttgtgtatgtctccctggtttcgttttcatcgacgagggcaaaagatatttaggctgcaagagaaacttgagtacagttgtttgcaaaggtgagaatgaaacttcatattctattgttgatgtggataacatagattgggaaaacactccatactctaatctatcattggataagactgcttgtaaagaggactgtttgatggattgcgactgtgaagctgcgatatttagggaccagcagtgcggaaaacaaaagctccctctaagatttggaagaactcgcaaacctggtgtggtgacaacctttgtcaaaaaggatactactgatgagagttttgatacaaaaaggaggagcaaggggagaaaaaatgttgacagagtcatatttatcagcagcattgcaactttaactttttcacttgttattatggcgattactggtgttgttatatatagatatcgtgtttggaattaccgaaagcttacaaattcagctggtgaaggactggttgaaggtgttacactgcagtcatatacatattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

363

Amino Acids

40.58

Weight (kDa)

8.47

Isoelectric Point (pI)

26.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	789
AcsI	RAATTY	2 cut(s)	511, 1033
AfaI	GTAC	2 cut(s)	422, 619
AflII	CTTAAG	1 cut(s)	353
AgeI	ACCGGT	1 cut(s)	326
AgsI	TTSAA	4 cut(s)	42, 164, 334, 1058
AjnI	CCWGG	4 cut(s)	189, 449, 559, 832
AleI	CACNNNNGTG	1 cut(s)	150
AloI	GAACNNNNNNTCC	2 cut(s)	263, 295
AluBI	AGCT	6 cut(s)	118, 266, 764, 802, 1027, 1040
AluI	AGCT	6 cut(s)	118, 266, 764, 802, 1027, 1040
Alw21I	GWGCWC	1 cut(s)	490
Alw26I	GTCTC	2 cut(s)	392, 560
AoxI	GGCC	2 cut(s)	496, 505
ApeKI	GCWGC	4 cut(s)	94, 600, 764, 939
ApoI	RAATTY	2 cut(s)	511, 1033
AsiGI	ACCGGT	1 cut(s)	326
AspS9I	GGNCC	2 cut(s)	209, 778
AsuHPI	GGTGA	4 cut(s)	459, 647, 853, 1055
AvaII	GGWCC	2 cut(s)	209, 778
BaeI	ACNNNNGTAYC	2 cut(s)	69, 102
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	490
BbvI	GCAGC	4 cut(s)	106, 587, 751, 951
BccI	CCATC	4 cut(s)	137, 176, 398, 739
BciT130I	CCWGG	4 cut(s)	191, 451, 561, 834
BciVI	GTATCC	2 cut(s)	210, 856
BclI	TGATCA	2 cut(s)	168, 292
BcoDI	GTCTC	2 cut(s)	392, 560
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	2 cut(s)	72, 1070
BfrI	CTTAAG	1 cut(s)	353
BfuI	GTATCC	2 cut(s)	210, 856
BglI	GCCNNNNNGGC	1 cut(s)	504
BisI	GCNGC	4 cut(s)	95, 601, 765, 940
BlsI	GCNGC	4 cut(s)	96, 602, 766, 941
Bme1390I	CCNGG	4 cut(s)	191, 451, 561, 834
Bme18I	GGWCC	2 cut(s)	209, 778
BmgT120I	GGNCC	2 cut(s)	209, 778
BmiI	GGNNCC	2 cut(s)	540, 779
BmrFI	CCNGG	4 cut(s)	191, 451, 561, 834
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	2 cut(s)	106, 388
BmuI	ACTGGG	1 cut(s)	261
BpuEI	CTTGAG	2 cut(s)	133, 634
BsaJI	CCNNGG	2 cut(s)	450, 559
BsaWI	WCCGGW	2 cut(s)	326, 414
BsaXI	ACNNNNNCTCC	2 cut(s)	786, 816
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	3 cut(s)	256, 988, 1056
Bse3DI	GCAATG	1 cut(s)	942
BseBI	CCWGG	4 cut(s)	191, 451, 561, 834
BseDI	CCNNGG	2 cut(s)	450, 559
BseMI	GCAATG	1 cut(s)	942
BseNI	ACTGG	3 cut(s)	256, 988, 1056
BseRI	GAGGAG	3 cut(s)	115, 480, 910
BseXI	GCAGC	4 cut(s)	106, 587, 751, 951
BseYI	CCCAGC	1 cut(s)	266
BshFI	GGCC	2 cut(s)	498, 507
BshTI	ACCGGT	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	490
BsiSI	CCGG	2 cut(s)	327, 415
BslFI	GGGAC	3 cut(s)	265, 268, 791
BsmAI	GTCTC	2 cut(s)	392, 560
BsmBI	CGTCTC	1 cut(s)	392
BsmFI	GGGAC	3 cut(s)	265, 268, 791
BsnI	GGCC	2 cut(s)	498, 507
Bsp1286I	GDGCHC	2 cut(s)	309, 490
Bsp143I	GATC	2 cut(s)	168, 292
BspACI	CCGC	1 cut(s)	789
BspANI	GGCC	2 cut(s)	498, 507
BspLI	GGNNCC	2 cut(s)	540, 779
BspMAI	CTGCAG	1 cut(s)	1074
BspTI	CTTAAG	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	942
BsrFI	RCCGGY	1 cut(s)	326
BsrI	ACTGG	3 cut(s)	256, 988, 1056
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	2 cut(s)	450, 559
BssMI	GATC	2 cut(s)	168, 292
Bst2UI	CCWGG	4 cut(s)	191, 451, 561, 834
Bst4CI	ACNGT	4 cut(s)	431, 622, 740, 758
BstAFI	CTTAAG	1 cut(s)	353
BstDEI	CTNAG	1 cut(s)	809
BstEII	GGTNACC	1 cut(s)	465
BstKTI	GATC	2 cut(s)	171, 295
BstMAI	GTCTC	2 cut(s)	392, 560
BstMBI	GATC	2 cut(s)	168, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	504
BstNI	CCWGG	4 cut(s)	191, 451, 561, 834
BstPI	GGTNACC	1 cut(s)	465
BstSCI	CCNGG	4 cut(s)	189, 449, 559, 832
BstSFI	CTRYAG	2 cut(s)	72, 1070
BstV1I	GCAGC	4 cut(s)	106, 587, 751, 951
BstXI	CCANNNNNNTGG	1 cut(s)	433
BsuI	GTATCC	2 cut(s)	210, 856
BsuRI	GGCC	2 cut(s)	498, 507
BtsI	GCAGTG	2 cut(s)	791, 1067
BtsIMutI	CAGTG	3 cut(s)	249, 791, 1067
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	2 cut(s)	209, 778
CsiI	ACCWGGT	2 cut(s)	189, 832
Csp6I	GTAC	2 cut(s)	421, 618
CspAI	ACCGGT	1 cut(s)	326
CviAII	CATG	1 cut(s)	172
CviQI	GTAC	2 cut(s)	421, 618
DdeI	CTNAG	1 cut(s)	809
DpnI	GATC	2 cut(s)	170, 294
DpnII	GATC	2 cut(s)	168, 292
Eco24I	GRGCYC	1 cut(s)	309
Eco32I	GATATC	1 cut(s)	1004
Eco47I	GGWCC	2 cut(s)	209, 778
Eco91I	GGTNACC	1 cut(s)	465
EcoO65I	GGTNACC	1 cut(s)	465
EcoRII	CCWGG	4 cut(s)	189, 449, 559, 832
EcoRV	GATATC	1 cut(s)	1004
EcoT38I	GRGCYC	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	392
FaeI	CATG	1 cut(s)	175
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FaqI	GGGAC	3 cut(s)	265, 268, 791
FatI	CATG	1 cut(s)	171
FbaI	TGATCA	2 cut(s)	168, 292
Fnu4HI	GCNGC	4 cut(s)	95, 601, 765, 940
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	4 cut(s)	95, 601, 765, 940
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	4 cut(s)	95, 601, 765, 940
GsaI	CCCAGC	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	498, 507
HapII	CCGG	2 cut(s)	327, 415
Hin1II	CATG	1 cut(s)	175
HincII	GTYRAC	1 cut(s)	919
HindII	GTYRAC	1 cut(s)	919
HindIII	AAGCTT	1 cut(s)	1025
HinfI	GANTC	7 cut(s)	8, 38, 142, 223, 373, 446, 924
HpaII	CCGG	2 cut(s)	327, 415
HphI	GGTGA	4 cut(s)	459, 647, 853, 1055
Hpy166II	GTNNAC	1 cut(s)	919
Hpy188I	TCNGA	4 cut(s)	37, 64, 263, 441
Hpy188III	TCNNGA	4 cut(s)	133, 290, 334, 391
Hpy8I	GTNNAC	1 cut(s)	919
Hpy99I	CGWCG	1 cut(s)	581
HpyAV	CCTTC	4 cut(s)	150, 552, 1040, 1052
HpyCH4III	ACNGT	4 cut(s)	431, 622, 740, 758
HpyCH4V	TGCA	5 cut(s)	175, 603, 630, 947, 1072
HpyF10VI	GCNNNNNNNGC	1 cut(s)	504
HpyF3I	CTNAG	1 cut(s)	809
Hsp92II	CATG	1 cut(s)	175
Ksp22I	TGATCA	2 cut(s)	168, 292
Kzo9I	GATC	2 cut(s)	168, 292
LmnI	GCTCC	3 cut(s)	493, 807, 897
Lsp1109I	GCAGC	4 cut(s)	106, 587, 751, 951
LweI	GCATC	2 cut(s)	106, 388
MabI	ACCWGGT	2 cut(s)	189, 832
MaeI	CTAG	1 cut(s)	228
MaeIII	GTNAC	4 cut(s)	14, 465, 841, 1063
MalI	GATC	2 cut(s)	170, 294
MboI	GATC	2 cut(s)	168, 292
MboII	GAAGA	2 cut(s)	305, 831
MfeI	CAATTG	2 cut(s)	204, 456
MhlI	GDGCHC	2 cut(s)	309, 490
MluCI	AATT	7 cut(s)	31, 204, 319, 456, 511, 1015, 1033
MlyI	GAGTC	2 cut(s)	232, 933
MmeI	TCCRAC	1 cut(s)	450
MseI	TTAA	3 cut(s)	318, 354, 953
MslI	CAYNNNNRTG	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	1040
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	2 cut(s)	327, 415
MspR9I	CCNGG	4 cut(s)	191, 451, 561, 834
MunI	CAATTG	2 cut(s)	204, 456
MvaI	CCWGG	4 cut(s)	191, 451, 561, 834
MwoI	GCNNNNNNNGC	1 cut(s)	504
NdeII	GATC	2 cut(s)	168, 292
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	2 cut(s)	540, 779
NmuCI	GTSAC	2 cut(s)	465, 841
OliI	CACNNNNGTG	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	2 cut(s)	382, 573
PfeI	GAWTC	5 cut(s)	8, 38, 142, 373, 446
PflFI	GACNNNGTC	1 cut(s)	923
PinAI	ACCGGT	1 cut(s)	326
PkrI	GCNGC	4 cut(s)	96, 602, 766, 941
PleI	GAGTC	2 cut(s)	231, 932
PpsI	GAGTC	2 cut(s)	231, 932
Psp6I	CCWGG	4 cut(s)	189, 449, 559, 832
PspEI	GGTNACC	1 cut(s)	465
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	4 cut(s)	189, 449, 559, 832
PspN4I	GGNNCC	2 cut(s)	540, 779
PspPI	GGNCC	2 cut(s)	209, 778
PstI	CTGCAG	1 cut(s)	1074
PsyI	GACNNNGTC	1 cut(s)	923
PvuII	CAGCTG	1 cut(s)	1040
RsaI	GTAC	2 cut(s)	422, 619
RsaNI	GTAC	2 cut(s)	421, 618
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	3 cut(s)	318, 354, 953
SatI	GCNGC	4 cut(s)	95, 601, 765, 940
Sau3AI	GATC	2 cut(s)	168, 292
Sau96I	GGNCC	2 cut(s)	209, 778
SchI	GAGTC	2 cut(s)	232, 933
ScrFI	CCNGG	4 cut(s)	191, 451, 561, 834
SduI	GDGCHC	2 cut(s)	309, 490
SexAI	ACCWGGT	2 cut(s)	189, 832
SfaNI	GCATC	2 cut(s)	106, 388
SfcI	CTRYAG	2 cut(s)	72, 1070
SfiI	GGCCNNNNNGGCC	1 cut(s)	504
SinI	GGWCC	2 cut(s)	209, 778
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	3 cut(s)	148, 353, 613
SmoI	CTYRAG	3 cut(s)	148, 353, 613
Sse9I	AATT	7 cut(s)	31, 204, 319, 456, 511, 1015, 1033
SsiI	CCGC	1 cut(s)	789
SspI	AATATT	1 cut(s)	236
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	4 cut(s)	189, 449, 559, 832
TaaI	ACNGT	4 cut(s)	431, 622, 740, 758
TaqI	TCGA	2 cut(s)	134, 576
TasI	AATT	7 cut(s)	31, 204, 319, 456, 511, 1015, 1033
TatI	WGTACW	2 cut(s)	420, 617
TfiI	GAWTC	5 cut(s)	8, 38, 142, 373, 446
Tru1I	TTAA	3 cut(s)	318, 354, 953
Tru9I	TTAA	3 cut(s)	318, 354, 953
TscAI	CASTG	3 cut(s)	256, 791, 1074
TseFI	GTSAC	2 cut(s)	465, 841
TseI	GCWGC	4 cut(s)	94, 600, 764, 939
Tsp45I	GTSAC	2 cut(s)	465, 841
TspDTI	ATGAA	4 cut(s)	386, 562, 639, 657
TspRI	CASTG	3 cut(s)	256, 791, 1074
Tth111I	GACNNNGTC	1 cut(s)	923
Vha464I	CTTAAG	1 cut(s)	353
VpaK11BI	GGWCC	2 cut(s)	209, 778
XapI	RAATTY	2 cut(s)	511, 1033
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.