Rorug06G0101600

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
13490446 .. 13494534
4089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0101600.1

Sequence Viewer

Length: 1539 bp
ATGGAGGAAGAGAAGCAGCAACTTAAGGACGAGAATCCTCCTTTGCAACAACAAGAACCAAAAGCAGAAGAAAAGGCAGTAGCAGAAGCAGAAGCAGCGGCAGCGAAAAGTGGAGGAGGATGGGGAGGAGGCTGGGGATTCTCCTCCGTTTTCACAGATCTCCAGAAGGCAGCTGAAGAGATCTCTCGCAACGCTGCGGCGGCTGCTCAGACAGCAGCAAAGAGCATTGCCGACATGCAAACCCCTGCCGAAGACTCTGAAGAGTCTTCCAAGGAGGAGGAGGAAGGGGATACTGAAAAGGAAAGCCAAGATGAGCTCGAGAAGCAACGAAAGGCTGCTCTAGAGAAATTGGAGAAAGCTAGTGAGGATTCGTTTCTCAGCCAGCATCTGAAGGTACTTGATAGTTCTGTGGAGAACTTTGCTTCAGGAGCATGGCAGGCTTTAGGAAGCGCTTTTAGAGGGGGTACCGATTTAGTTCACAAGCTTGAGCATTCTGCTGTGAACCTAGCAGAATCTATTCAGCGAGATGGTGCTGGTTCTGTTGCACCATCATTGTTAGAGACTGGAAAAGCTTTTACCTCAAAGGGAATGCAAGCGCTTGAGCTAGTAGGCAAGGAAACCTTGGATCTTCTGATTACTGAAACTGGTATTGAAGTTGATAAGAATTCTAAGCACTCTGATCAAGAAGGTGAAGAGGATCAGTTATATGAGGAAGTGGGGTTTGATCGATGTTTCTACATATATGGAGGTCCAGAACACTTGGAGGAACTTGAGGCATTGTCCAGTCATTATGCACTACTATTTAACCGGAGAAAAGGAAAACTATCACCAGAGCAGAAATCTGTTTATGATGGAAAGCTTAAGCTGTTTCAGCAGATTTTCAGTCTGAACTCTGAATTGGATGGAAGTGGGGCAGAGTCGGACAAAGGCAAAAAGAAAGAGACTGGAGCTGATGGAAATAGTGATGAGATGAAGAGCTTACATGATTCAAGTGTCAGCAAAGCTGCTGATATGGCTGCTGGGTTCACGAGTGCCTTAGCAGGACTAGCTGTTAATGATATAATTCAAAGAACTACTGGCAGATTAGAGAGCCTTCACTCGGAGGGGGTTCATAGACTCTCTGAACTTTGCTGTTCTGCGGTGTCTCAACTGCTAATGCTTGGTAAAGCCATCATATCTAATGCAAACAAAGCTCAGGCTGAAGACGTGGATGCTGATTTGGGGAATATTGACTGGCCTGAAGATTCTGTTGAAAAAGCAAAGATAATCAGATCAAAAGCACAAGCAATGACAGGATATGTGGAAGCGGTGTCCAGCAGTTTCATTACAGGCATATCTGATGTTGCTGAAGCATATGCAGCAGCCATAAAGGGTGCTGCAGAATCCCAAGAAGTGCTTCCACAGACATCAATGCAGGAAAAAGCAAATTCCTTCTCTGAACATCTCCGTGGCGACCAGACCATAGCTTTGAGCAAAATCCAGGACGGGCTTCACCACTTGTCTTATGTGGTGGTTTCAACCTCTATGCCTGCAGCTTAA

Protein Analysis

512

Amino Acids

54.93

Weight (kDa)

4.69

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7798 PF25074 239 - 509 7.9e-139 Domain of unknown function (DUF7798)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 464
AccB1I GGYRCC 1 cut(s) 464
AciI CCGC 5 cut(s) 98, 197, 200, 1139, 1307
AclWI GGATC 2 cut(s) 633, 705
AcsI RAATTY 2 cut(s) 664, 1426
AcuI CTGAAG 7 cut(s) 195, 279, 408, 410, 1221, 1260, 1368
AfaI GTAC 2 cut(s) 396, 466
AfeI AGCGCT 2 cut(s) 451, 597
AfiI CCNNNNNNNGG 1 cut(s) 1099
AflII CTTAAG 2 cut(s) 23, 860
AgsI TTSAA 5 cut(s) 653, 990, 1067, 1253, 1518
AjiI CACGTC 1 cut(s) 1207
AjnI CCWGG 1 cut(s) 1479
AjuI GAANNNNNNNTTGG 4 cut(s) 881, 913, 1380, 1412
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 3 cut(s) 554, 935, 1149
AlwI GGATC 2 cut(s) 633, 705
AlwNI CAGNNNCTG 1 cut(s) 388
Ama87I CYCGRG 1 cut(s) 317
Aor51HI AGCGCT 2 cut(s) 451, 597
AoxI GGCC 1 cut(s) 1235
ApoI RAATTY 2 cut(s) 664, 1426
ArsI GACNNNNNNTTYG 2 cut(s) 1450, 1482
Asp700I GAANNNNTTC 2 cut(s) 516, 1395
Asp718I GGTACC 1 cut(s) 464
AspLEI GCGC 2 cut(s) 452, 598
AspS9I GGNCC 1 cut(s) 749
AsuHPI GGTGA 3 cut(s) 701, 819, 1484
AvaI CYCGRG 1 cut(s) 317
AvaII GGWCC 1 cut(s) 749
BanI GGYRCC 1 cut(s) 464
BanII GRGCYC 1 cut(s) 318
BauI CACGAG 1 cut(s) 1027
BbsI GAAGAC 3 cut(s) 258, 258, 1209
Bbv12I GWGCWC 1 cut(s) 318
BccI CCATC 7 cut(s) 114, 521, 556, 845, 896, 947, 1178
BciT130I CCWGG 1 cut(s) 1481
BciVI GTATCC 1 cut(s) 283
BclI TGATCA 1 cut(s) 679
BcoDI GTCTC 3 cut(s) 554, 935, 1149
BfaI CTAG 5 cut(s) 341, 360, 506, 605, 1046
BfmI CTRYAG 2 cut(s) 1377, 1530
BfoI RGCGCY 2 cut(s) 453, 599
BfrI CTTAAG 2 cut(s) 23, 860
BfuI GTATCC 1 cut(s) 283
BglII AGATCT 2 cut(s) 157, 180
Bme1390I CCNGG 1 cut(s) 1481
Bme18I GGWCC 1 cut(s) 749
BmeT110I CYCGRG 1 cut(s) 317
BmgBI CACGTC 1 cut(s) 1207
BmgT120I GGNCC 1 cut(s) 749
BmiI GGNNCC 1 cut(s) 466
BmrFI CCNGG 1 cut(s) 1481
BmsI GCATC 2 cut(s) 394, 1201
BpiI GAAGAC 3 cut(s) 258, 258, 1209
BpmI CTGGAG 2 cut(s) 146, 966
Bpu10I CCTNAGC 2 cut(s) 1036, 1194
BpuEI CTTGAG 3 cut(s) 506, 620, 791
Bsa29I ATCGAT 1 cut(s) 727
BsaJI CCNNGG 3 cut(s) 270, 621, 1447
BsaWI WCCGGW 1 cut(s) 807
Bsc4I CCNNNNNNNGG 1 cut(s) 1099
Bse1I ACTGG 6 cut(s) 568, 649, 783, 949, 1081, 1238
Bse3DI GCAATG 2 cut(s) 225, 1293
BseBI CCWGG 1 cut(s) 1481
BseCI ATCGAT 1 cut(s) 727
BseDI CCNNGG 3 cut(s) 270, 621, 1447
BseGI GGATG 3 cut(s) 125, 907, 1216
BseLI CCNNNNNNNGG 1 cut(s) 1099
BseMI GCAATG 2 cut(s) 225, 1293
BseMII CTCAG 3 cut(s) 221, 391, 1208
BseNI ACTGG 6 cut(s) 568, 649, 783, 949, 1081, 1238
BseRI GAGGAG 5 cut(s) 129, 133, 141, 290, 293
BseYI CCCAGC 2 cut(s) 132, 1019
BshFI GGCC 1 cut(s) 1237
BshNI GGYRCC 1 cut(s) 464
BshVI ATCGAT 1 cut(s) 727
BsiHKAI GWGCWC 1 cut(s) 318
BsiHKCI CYCGRG 1 cut(s) 317
BsiSI CCGG 1 cut(s) 808
BslI CCNNNNNNNGG 1 cut(s) 1099
BsmAI GTCTC 3 cut(s) 554, 935, 1149
BsmI GAATGC 2 cut(s) 490, 594
BsnI GGCC 1 cut(s) 1237
BsoBI CYCGRG 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 7 cut(s) 157, 180, 625, 679, 697, 724, 1271
BspACI CCGC 5 cut(s) 98, 197, 200, 1139, 1307
BspANI GGCC 1 cut(s) 1237
BspCNI CTCAG 3 cut(s) 220, 390, 1207
BspDI ATCGAT 1 cut(s) 727
BspLI GGNNCC 1 cut(s) 466
BspMAI CTGCAG 2 cut(s) 1381, 1534
BspPI GGATC 2 cut(s) 633, 705
BspQI GCTCTTC 1 cut(s) 968
BspT107I GGYRCC 1 cut(s) 464
BspTI CTTAAG 2 cut(s) 23, 860
BsrDI GCAATG 2 cut(s) 225, 1293
BsrI ACTGG 6 cut(s) 568, 649, 783, 949, 1081, 1238
BssECI CCNNGG 3 cut(s) 270, 621, 1447
BssMI GATC 7 cut(s) 157, 180, 625, 679, 697, 724, 1271
BssSI CACGAG 1 cut(s) 1027
BssT1I CCWWGG 2 cut(s) 270, 621
Bst2BI CACGAG 1 cut(s) 1027
Bst2UI CCWGG 1 cut(s) 1481
Bst6I CTCTTC 5 cut(s) 3, 171, 255, 687, 968
BstAFI CTTAAG 2 cut(s) 23, 860
BstC8I GCNNGC 4 cut(s) 383, 438, 594, 1530
BstDEI CTNAG 5 cut(s) 207, 377, 669, 1036, 1194
BstDSI CCRYGG 1 cut(s) 1447
BstF5I GGATG 3 cut(s) 125, 907, 1216
BstH2I RGCGCY 2 cut(s) 453, 599
BstHHI GCGC 2 cut(s) 452, 598
BstKTI GATC 7 cut(s) 160, 183, 628, 682, 700, 727, 1274
BstMAI GTCTC 3 cut(s) 554, 935, 1149
BstMBI GATC 7 cut(s) 157, 180, 625, 679, 697, 724, 1271
BstNI CCWGG 1 cut(s) 1481
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 1479
BstSFI CTRYAG 2 cut(s) 1377, 1530
BstV2I GAAGAC 3 cut(s) 258, 258, 1209
BstX2I RGATCY 3 cut(s) 157, 180, 625
BstYI RGATCY 3 cut(s) 157, 180, 625
Bsu15I ATCGAT 1 cut(s) 727
BsuI GTATCC 1 cut(s) 283
BsuRI GGCC 1 cut(s) 1237
BsuTUI ATCGAT 1 cut(s) 727
BtgI CCRYGG 1 cut(s) 1447
BtrI CACGTC 1 cut(s) 1207
BtsCI GGATG 3 cut(s) 125, 907, 1216
Cac8I GCNNGC 4 cut(s) 383, 438, 594, 1530
CaiI CAGNNNCTG 1 cut(s) 388
CfoI GCGC 2 cut(s) 452, 598
Cfr13I GGNCC 1 cut(s) 749
ClaI ATCGAT 1 cut(s) 727
Csp6I GTAC 2 cut(s) 395, 465
CviAII CATG 3 cut(s) 235, 432, 983
CviQI GTAC 2 cut(s) 395, 465
DdeI CTNAG 5 cut(s) 207, 377, 669, 1036, 1194
DpnI GATC 7 cut(s) 159, 182, 627, 681, 699, 726, 1273
DpnII GATC 7 cut(s) 157, 180, 625, 679, 697, 724, 1271
Eam1104I CTCTTC 5 cut(s) 3, 171, 255, 687, 968
EarI CTCTTC 5 cut(s) 3, 171, 255, 687, 968
Ecl136II GAGCTC 1 cut(s) 316
Eco130I CCWWGG 2 cut(s) 270, 621
Eco24I GRGCYC 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 749
Eco47III AGCGCT 2 cut(s) 451, 597
Eco53kI GAGCTC 1 cut(s) 316
Eco57I CTGAAG 7 cut(s) 195, 279, 408, 410, 1221, 1260, 1368
Eco88I CYCGRG 1 cut(s) 317
EcoICRI GAGCTC 1 cut(s) 316
EcoRI GAATTC 1 cut(s) 664
EcoRII CCWGG 1 cut(s) 1479
EcoT14I CCWWGG 2 cut(s) 270, 621
EcoT38I GRGCYC 1 cut(s) 318
ErhI CCWWGG 2 cut(s) 270, 621
FaeI CATG 3 cut(s) 238, 435, 986
FalI AAGNNNNNCTT 4 cut(s) 605, 637, 1380, 1412
FatI CATG 3 cut(s) 234, 431, 982
FauNDI CATATG 1 cut(s) 1354
FbaI TGATCA 1 cut(s) 679
FokI GGATG 3 cut(s) 132, 914, 1223
FriOI GRGCYC 1 cut(s) 318
FspBI CTAG 5 cut(s) 341, 360, 506, 605, 1046
GlaI GCGC 2 cut(s) 451, 597
GsaI CCCAGC 2 cut(s) 136, 1023
GsuI CTGGAG 2 cut(s) 146, 966
HaeII RGCGCY 2 cut(s) 453, 599
HaeIII GGCC 1 cut(s) 1237
HapII CCGG 1 cut(s) 808
HhaI GCGC 2 cut(s) 452, 598
Hin1II CATG 3 cut(s) 238, 435, 986
Hin6I GCGC 2 cut(s) 450, 596
HinP1I GCGC 2 cut(s) 450, 596
HindIII AAGCTT 3 cut(s) 482, 570, 857
HpaII CCGG 1 cut(s) 808
HphI GGTGA 3 cut(s) 701, 819, 1484
Hpy166II GTNNAC 3 cut(s) 478, 502, 1026
Hpy188III TCNNGA 7 cut(s) 163, 319, 341, 426, 683, 752, 1027
Hpy8I GTNNAC 3 cut(s) 478, 502, 1026
HpyAV CCTTC 6 cut(s) 160, 278, 385, 680, 1103, 1441
HpyCH4IV ACGT 1 cut(s) 1206
HpyF3I CTNAG 5 cut(s) 207, 377, 669, 1036, 1194
HpySE526I ACGT 1 cut(s) 1206
Hsp92II CATG 3 cut(s) 238, 435, 986
HspAI GCGC 2 cut(s) 450, 596
KpnI GGTACC 1 cut(s) 468
Ksp22I TGATCA 1 cut(s) 679
Kzo9I GATC 7 cut(s) 157, 180, 625, 679, 697, 724, 1271
LguI GCTCTTC 1 cut(s) 968
LmnI GCTCC 2 cut(s) 428, 947
LweI GCATC 2 cut(s) 394, 1201
MaeI CTAG 5 cut(s) 341, 360, 506, 605, 1046
MaeII ACGT 1 cut(s) 1206
MalI GATC 7 cut(s) 159, 182, 627, 681, 699, 726, 1273
MboI GATC 7 cut(s) 157, 180, 625, 679, 697, 724, 1271
MflI RGATCY 3 cut(s) 157, 180, 625
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 5 cut(s) 347, 664, 896, 1062, 1426
MlyI GAGTC 4 cut(s) 248, 272, 926, 1110
MmeI TCCRAC 1 cut(s) 900
MroXI GAANNNNTTC 2 cut(s) 516, 1395
MseI TTAA 5 cut(s) 24, 804, 861, 1053, 1537
MslI CAYNNNNRTG 1 cut(s) 1446
MspA1I CMGCKG 2 cut(s) 98, 173
MspCI CTTAAG 2 cut(s) 23, 860
MspI CCGG 1 cut(s) 808
MspR9I CCNGG 1 cut(s) 1481
Mva1269I GAATGC 2 cut(s) 490, 594
MvaI CCWGG 1 cut(s) 1481
NdeI CATATG 1 cut(s) 1354
NdeII GATC 7 cut(s) 157, 180, 625, 679, 697, 724, 1271
NlaIII CATG 3 cut(s) 238, 435, 986
NlaIV GGNNCC 1 cut(s) 466
NspI RCATGY 1 cut(s) 238
PaeR7I CTCGAG 1 cut(s) 317
PciSI GCTCTTC 1 cut(s) 968
PctI GAATGC 2 cut(s) 490, 594
PdmI GAANNNNTTC 2 cut(s) 516, 1395
PfeI GAWTC 7 cut(s) 34, 138, 368, 512, 986, 1244, 1382
PfoI TCCNGGA 1 cut(s) 1479
PleI GAGTC 4 cut(s) 248, 271, 925, 1110
PpsI GAGTC 4 cut(s) 248, 271, 925, 1110
Psp124BI GAGCTC 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 1479
PspFI CCCAGC 2 cut(s) 132, 1019
PspGI CCWGG 1 cut(s) 1479
PspN4I GGNNCC 1 cut(s) 466
PspPI GGNCC 1 cut(s) 749
PstI CTGCAG 2 cut(s) 1381, 1534
PstNI CAGNNNCTG 1 cut(s) 388
PsuI RGATCY 3 cut(s) 157, 180, 625
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 2 cut(s) 396, 466
RsaNI GTAC 2 cut(s) 395, 465
RseI CAYNNNNRTG 1 cut(s) 1446
SacI GAGCTC 1 cut(s) 318
SapI GCTCTTC 1 cut(s) 968
SaqAI TTAA 5 cut(s) 24, 804, 861, 1053, 1537
Sau3AI GATC 7 cut(s) 157, 180, 625, 679, 697, 724, 1271
Sau96I GGNCC 1 cut(s) 749
SchI GAGTC 4 cut(s) 248, 272, 926, 1110
ScrFI CCNGG 1 cut(s) 1481
SduI GDGCHC 1 cut(s) 318
SfaNI GCATC 2 cut(s) 394, 1201
SfcI CTRYAG 2 cut(s) 1377, 1530
Sfr274I CTCGAG 1 cut(s) 317
SinI GGWCC 1 cut(s) 749
SlaI CTCGAG 1 cut(s) 317
SmiMI CAYNNNNRTG 1 cut(s) 1446
SmlI CTYRAG 6 cut(s) 23, 317, 485, 599, 770, 860
SmoI CTYRAG 6 cut(s) 23, 317, 485, 599, 770, 860
Sse9I AATT 5 cut(s) 347, 664, 896, 1062, 1426
SsiI CCGC 5 cut(s) 98, 197, 200, 1139, 1307
SspI AATATT 1 cut(s) 1228
SspMI CTAG 5 cut(s) 341, 360, 506, 605, 1046
SstI GAGCTC 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 1479
StyI CCWWGG 2 cut(s) 270, 621
TaiI ACGT 1 cut(s) 1209
TaqI TCGA 2 cut(s) 318, 727
TasI AATT 5 cut(s) 347, 664, 896, 1062, 1426
TauI GCSGC 3 cut(s) 101, 200, 203
TfiI GAWTC 7 cut(s) 34, 138, 368, 512, 986, 1244, 1382
Tru1I TTAA 5 cut(s) 24, 804, 861, 1053, 1537
Tru9I TTAA 5 cut(s) 24, 804, 861, 1053, 1537
TspDTI ATGAA 3 cut(s) 986, 1100, 1312
TspGWI ACGGA 2 cut(s) 136, 1436
Vha464I CTTAAG 2 cut(s) 23, 860
VpaK11BI GGWCC 1 cut(s) 749
XapI RAATTY 2 cut(s) 664, 1426
XbaI TCTAGA 1 cut(s) 340
XceI RCATGY 1 cut(s) 238
XhoI CTCGAG 1 cut(s) 317
XmnI GAANNNNTTC 2 cut(s) 516, 1395
XspI CTAG 5 cut(s) 341, 360, 506, 605, 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.