Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001464

Physical Location & Seq

Genomic Coordinates Reverse (-)

38447896 .. 38449090

Gene Structure 1195 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24797

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCTGCAACTTTTCTTTTCCTTCTTCTTCTTCTTCAAGTTGCAGCTGCTCAACAAGGGAATATCAGCCTAGGTGCTTCTCTATATCCCACTAACAACTCATATTGGTTATCGAATTCGGGTCAGTTTGCCTTTGGCTTCTACAGGCAAGGAAATGACTCTGCTGTAGGCATCTGGTTCGAGAAAACCAATCCGAAAACAATCATCTGGACAGCAAATCGTGATGCTGTTAATCAAGAGCCACTACCTAATGATGTTAGATTGACTATGAGGGACAATAGAGTAGAGCTCATTTCAACAAGCAAGAATGCCTTCCTTATACCAATTTCAAATTCTTCCCAGCCTGCTGTCAGGGCCTCCATGCTTGATTCAGGTAACTTTGTGCTCTACAATTCTGATTTAAACATCATTTGGCAGACTTTTGATGTTCCAACAAATACCATTGTATCCGGGCAGCGTCTGTTGGCTGGAATAAAGCTCATCTCCTCCGTCTCAAACACGAATCACTCAAGTGGAAAGTTTCAACTGATCATGGAGGGAGATGGCAACCCGGTTCAGTATCCAATTGGTCCATTTACAGTGAGTCTTGACCAATATGCTTATTGGAACACTGAGACATTTACAGCAGGGAACAATAAATGCCTTTATATGTATCGTAGCTATCGTCTGACGATTGATGCTGATGGAATACTCCGGCTGTACTCCTATAGTTTAGGTCAGAATGATTCCTGGTCAATTGAGTGGTCACCACCCAATGTTGATGAGTGTGCTCCTCCTGAACTCTGTGGCCTAAATTCTTATTGTGTTCTTGGGGAACTAGAACCTTCTTGTGTATGTCTCCCTGGTTTTGTTTTCATCGATGAGGGCCAAAAATATTTAGGCTGCAAGAGAAACTGGAGTGCAGTTGGTTGCAAAGGTGAGAATGAAACTTCATATTCTATTGTTGATGTCGATAACATAAATTGGGAAAATACTCCCTACTCTATTCTATCATTGGATAAGACTTCTTGTAAAGAGGACTATTTGATGGATTGTAACTGTGAAGCTACGATATTTACGAACCAGCAGTGCAGAAAACAAAAGCTCCCTCTAAGATTTGGAAGAACTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

370

Amino Acids

41.4

Weight (kDa)

4.86

Isoelectric Point (pI)

32.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	67 - 155	5.6e-11	D-mannose binding lectin
S_locus_glycop	PF00954	215 - 284	2.4e-06	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14250
malus_domestica	MD05G1020600.v1.1
prunus_persica	Prupe.8G024600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276401 RchiOBHm_Chr6g0276411 RchiOBHm_Chr6g0276421 RchiOBHm_Chr6g0276441 RchiOBHm_Chr6g0276461 RchiOBHm_Chr6g0276511 RchiOBHm_Chr6g0276531 RchiOBHm_Chr6g0287831
rosa_laevigata	RLG00000013394 RLG00000013396
rosa_multiflora	Rmu_co8365989.1_g000001 Rmu_sc0003877.1_g000005 Rmu_sc0004126.1_g000003 Rmu_sc0004126.1_g000009 Rmu_sc0004126.1_g000010 Rmu_sc0004126.1_g000014 Rmu_sc0004126.1_g000016 Rmu_sc0004248.1_g000005 Rmu_sc0004248.1_g000009 Rmu_sc0004248.1_g000029 Rmu_sc0007724.1_g000004 Rmu_ssc0000059.1_g000026
rosa_roxburghii	Rroxscaffold_7G00180750 Rroxscaffold_7G00181160 Rroxscaffold_7G00192200 Rroxscaffold_7G00192230 Rroxscaffold_7G00192240
rosa_rugosa	Rorug06G0101300 Rorug06G0101500 Rorug06G0101600
rosa_samantha	Rh6AG212100 Rh6AG212200 Rh6AG301900 Rh6BG216400 Rh6BG216800 Rh6BG217000 Rh6BG217200 Rh6BG308000 Rh6CG218600 Rh6CG219000 Rh6CG219100 Rh6DG208400 Rh6DG208500 Rh6DG209100 Rh6DG300600
rosa_wichuraiana	Rw6G018510 Rw6G018530 Rw6G018540 Rw6G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	115, 331, 793
AfaI	GTAC	1 cut(s)	701
AgsI	TTSAA	4 cut(s)	38, 297, 330, 524
AjnI	CCWGG	2 cut(s)	728, 841
AjuI	GAANNNNNNNTTGG	2 cut(s)	316, 348
AleI	CACNNNNGTG	1 cut(s)	510
AluBI	AGCT	6 cut(s)	47, 289, 478, 660, 1046, 1084
AluI	AGCT	6 cut(s)	47, 289, 478, 660, 1046, 1084
Alw21I	GWGCWC	3 cut(s)	291, 387, 772
Alw26I	GTCTC	3 cut(s)	496, 608, 842
AlwNI	CAGNNNCTG	1 cut(s)	460
AoxI	GGCC	3 cut(s)	354, 787, 865
ApeKI	GCWGC	5 cut(s)	5, 44, 47, 454, 882
ApoI	RAATTY	3 cut(s)	115, 331, 793
Asp700I	GAANNNNTTC	1 cut(s)	311
AspA2I	CCTAGG	1 cut(s)	70
AspS9I	GGNCC	3 cut(s)	354, 569, 865
AsuC2I	CCSGG	2 cut(s)	451, 551
AsuHPI	GGTGA	2 cut(s)	738, 929
AvaII	GGWCC	1 cut(s)	569
AvrII	CCTAGG	1 cut(s)	70
BaeI	ACNNNNGTAYC	2 cut(s)	429, 462
BanII	GRGCYC	1 cut(s)	291
Bbv12I	GWGCWC	3 cut(s)	291, 387, 772
BbvI	GCAGC	4 cut(s)	34, 56, 466, 869
BccI	CCATC	3 cut(s)	536, 677, 1021
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciT130I	CCWGG	2 cut(s)	730, 843
BciVI	GTATCC	2 cut(s)	457, 570
BclI	TGATCA	1 cut(s)	528
BcnI	CCSGG	2 cut(s)	451, 551
BcoDI	GTCTC	3 cut(s)	496, 608, 842
BfaI	CTAG	2 cut(s)	71, 818
BfmI	CTRYAG	3 cut(s)	142, 165, 706
BfuI	GTATCC	2 cut(s)	457, 570
BisI	GCNGC	5 cut(s)	6, 45, 48, 455, 883
BlnI	CCTAGG	1 cut(s)	70
BlsI	GCNGC	5 cut(s)	7, 46, 49, 456, 884
Bme1390I	CCNGG	4 cut(s)	451, 551, 730, 843
Bme18I	GGWCC	1 cut(s)	569
BmgT120I	GGNCC	3 cut(s)	354, 569, 865
BmrFI	CCNGG	4 cut(s)	451, 551, 730, 843
BmsI	GCATC	3 cut(s)	180, 214, 667
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
BpmI	CTGGAG	1 cut(s)	916
BpuEI	CTTGAG	1 cut(s)	493
BpuMI	CCSGG	2 cut(s)	451, 551
Bsa29I	ATCGAT	1 cut(s)	858
BsaJI	CCNNGG	2 cut(s)	70, 841
BsaXI	ACNNNNNCTCC	2 cut(s)	1068, 1098
Bse1I	ACTGG	1 cut(s)	899
BseBI	CCWGG	2 cut(s)	730, 843
BseCI	ATCGAT	1 cut(s)	858
BseDI	CCNNGG	2 cut(s)	70, 841
BseMII	CTCAG	1 cut(s)	603
BseNI	ACTGG	1 cut(s)	899
BseRI	GAGGAG	2 cut(s)	475, 762
BseXI	GCAGC	4 cut(s)	34, 56, 466, 869
BseYI	CCCAGC	1 cut(s)	339
BsgI	GTGCAG	2 cut(s)	921, 1090
BshFI	GGCC	3 cut(s)	356, 789, 867
BshVI	ATCGAT	1 cut(s)	858
BsiHKAI	GWGCWC	3 cut(s)	291, 387, 772
BsiSI	CCGG	3 cut(s)	450, 551, 694
BslFI	GGGAC	1 cut(s)	287
BsmAI	GTCTC	3 cut(s)	496, 608, 842
BsmBI	CGTCTC	1 cut(s)	496
BsmFI	GGGAC	1 cut(s)	287
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	3 cut(s)	356, 789, 867
Bsp1286I	GDGCHC	3 cut(s)	291, 387, 772
Bsp143I	GATC	1 cut(s)	528
BspANI	GGCC	3 cut(s)	356, 789, 867
BspCNI	CTCAG	1 cut(s)	604
BspDI	ATCGAT	1 cut(s)	858
BsrI	ACTGG	1 cut(s)	899
BssECI	CCNNGG	2 cut(s)	70, 841
BssMI	GATC	1 cut(s)	528
BssT1I	CCWWGG	1 cut(s)	70
Bst2UI	CCWGG	2 cut(s)	730, 843
Bst4CI	ACNGT	2 cut(s)	580, 1040
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	2 cut(s)	612, 1091
BstEII	GGTNACC	1 cut(s)	744
BstKTI	GATC	1 cut(s)	531
BstMAI	GTCTC	3 cut(s)	496, 608, 842
BstMBI	GATC	1 cut(s)	528
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNI	CCWGG	2 cut(s)	730, 843
BstPI	GGTNACC	1 cut(s)	744
BstSCI	CCNGG	4 cut(s)	449, 549, 728, 841
BstSFI	CTRYAG	3 cut(s)	142, 165, 706
BstV1I	GCAGC	4 cut(s)	34, 56, 466, 869
Bsu15I	ATCGAT	1 cut(s)	858
BsuI	GTATCC	2 cut(s)	457, 570
BsuRI	GGCC	3 cut(s)	356, 789, 867
BsuTUI	ATCGAT	1 cut(s)	858
BtsI	GCAGTG	1 cut(s)	1073
BtsIMutI	CAGTG	3 cut(s)	585, 609, 1073
Cac8I	GCNNGC	1 cut(s)	345
CaiI	CAGNNNCTG	1 cut(s)	460
Cfr13I	GGNCC	3 cut(s)	354, 569, 865
ClaI	ATCGAT	1 cut(s)	858
CseI	GACGC	1 cut(s)	446
Csp6I	GTAC	1 cut(s)	700
CviAII	CATG	2 cut(s)	361, 532
CviQI	GTAC	1 cut(s)	700
DdeI	CTNAG	2 cut(s)	612, 1091
DpnI	GATC	1 cut(s)	530
DpnII	GATC	1 cut(s)	528
DraI	TTTAAA	1 cut(s)	402
Ecl136II	GAGCTC	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	569
Eco53kI	GAGCTC	1 cut(s)	289
Eco91I	GGTNACC	1 cut(s)	744
EcoICRI	GAGCTC	1 cut(s)	289
EcoO109I	RGGNCCY	1 cut(s)	354
EcoO65I	GGTNACC	1 cut(s)	744
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	2 cut(s)	728, 841
EcoT14I	CCWWGG	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	70
Esp3I	CGTCTC	1 cut(s)	496
FaeI	CATG	2 cut(s)	364, 535
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	2 cut(s)	360, 531
FbaI	TGATCA	1 cut(s)	528
Fnu4HI	GCNGC	5 cut(s)	6, 45, 48, 455, 883
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	5 cut(s)	6, 45, 48, 455, 883
FspBI	CTAG	2 cut(s)	71, 818
GluI	GCNGC	5 cut(s)	6, 45, 48, 455, 883
GsaI	CCCAGC	1 cut(s)	343
GsuI	CTGGAG	1 cut(s)	916
HaeIII	GGCC	3 cut(s)	356, 789, 867
HapII	CCGG	3 cut(s)	450, 551, 694
HgaI	GACGC	1 cut(s)	446
Hin1II	CATG	2 cut(s)	364, 535
HinfI	GANTC	5 cut(s)	158, 368, 502, 583, 725
HpaII	CCGG	3 cut(s)	450, 551, 694
HphI	GGTGA	2 cut(s)	738, 929
Hpy188I	TCNGA	4 cut(s)	195, 397, 669, 720
Hpy188III	TCNNGA	6 cut(s)	181, 208, 221, 236, 587, 776
HpyAV	CCTTC	3 cut(s)	32, 322, 834
HpyCH4III	ACNGT	2 cut(s)	580, 1040
HpyCH4V	TGCA	6 cut(s)	8, 44, 885, 902, 912, 1071
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	2 cut(s)	612, 1091
Hsp92II	CATG	2 cut(s)	364, 535
Ksp22I	TGATCA	1 cut(s)	528
Kzo9I	GATC	1 cut(s)	528
LmnI	GCTCC	2 cut(s)	775, 1089
Lsp1109I	GCAGC	4 cut(s)	34, 56, 466, 869
LweI	GCATC	3 cut(s)	180, 214, 667
MaeI	CTAG	2 cut(s)	71, 818
MaeIII	GTNAC	3 cut(s)	374, 744, 1034
MalI	GATC	1 cut(s)	530
MboI	GATC	1 cut(s)	528
MboII	GAAGA	6 cut(s)	17, 20, 23, 26, 327, 1113
MfeI	CAATTG	2 cut(s)	564, 735
MhlI	GDGCHC	3 cut(s)	291, 387, 772
MluCI	AATT	8 cut(s)	115, 324, 331, 391, 564, 735, 793, 961
MlyI	GAGTC	2 cut(s)	152, 592
MmeI	TCCRAC	1 cut(s)	455
MnlI	CCTC	8 cut(s)	264, 367, 496, 529, 783, 856, 1009, 1098
MroXI	GAANNNNTTC	1 cut(s)	311
MseI	TTAA	2 cut(s)	231, 401
MslI	CAYNNNNRTG	1 cut(s)	510
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	3 cut(s)	450, 551, 694
MspR9I	CCNGG	4 cut(s)	451, 551, 730, 843
MunI	CAATTG	2 cut(s)	564, 735
Mva1269I	GAATGC	1 cut(s)	313
MvaI	CCWGG	2 cut(s)	730, 843
MwoI	GCNNNNNNNGC	1 cut(s)	353
NciI	CCSGG	2 cut(s)	451, 551
NdeII	GATC	1 cut(s)	528
NlaIII	CATG	2 cut(s)	364, 535
NmuCI	GTSAC	1 cut(s)	744
OliI	CACNNNNGTG	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	2 cut(s)	661, 1055
PctI	GAATGC	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	311
PfeI	GAWTC	3 cut(s)	368, 502, 725
PkrI	GCNGC	5 cut(s)	7, 46, 49, 456, 884
PleI	GAGTC	2 cut(s)	152, 591
PpsI	GAGTC	2 cut(s)	152, 591
Psp124BI	GAGCTC	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	728, 841
PspEI	GGTNACC	1 cut(s)	744
PspFI	CCCAGC	1 cut(s)	339
PspGI	CCWGG	2 cut(s)	728, 841
PspPI	GGNCC	3 cut(s)	354, 569, 865
PstNI	CAGNNNCTG	1 cut(s)	460
PvuII	CAGCTG	1 cut(s)	47
RsaI	GTAC	1 cut(s)	701
RsaNI	GTAC	1 cut(s)	700
RseI	CAYNNNNRTG	1 cut(s)	510
SacI	GAGCTC	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	231, 401
SatI	GCNGC	5 cut(s)	6, 45, 48, 455, 883
Sau3AI	GATC	1 cut(s)	528
Sau96I	GGNCC	3 cut(s)	354, 569, 865
SchI	GAGTC	2 cut(s)	152, 592
ScrFI	CCNGG	4 cut(s)	451, 551, 730, 843
SduI	GDGCHC	3 cut(s)	291, 387, 772
SfaNI	GCATC	3 cut(s)	180, 214, 667
SfcI	CTRYAG	3 cut(s)	142, 165, 706
SinI	GGWCC	1 cut(s)	569
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	508
SmoI	CTYRAG	1 cut(s)	508
Sse9I	AATT	8 cut(s)	115, 324, 331, 391, 564, 735, 793, 961
SspI	AATATT	1 cut(s)	875
SspMI	CTAG	2 cut(s)	71, 818
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	4 cut(s)	449, 549, 728, 841
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	2 cut(s)	580, 1040
TaqI	TCGA	4 cut(s)	113, 180, 858, 951
TasI	AATT	8 cut(s)	115, 324, 331, 391, 564, 735, 793, 961
TatI	WGTACW	1 cut(s)	699
TfiI	GAWTC	3 cut(s)	368, 502, 725
Tru1I	TTAA	2 cut(s)	231, 401
Tru9I	TTAA	2 cut(s)	231, 401
TscAI	CASTG	3 cut(s)	585, 616, 1073
TseFI	GTSAC	1 cut(s)	744
TseI	GCWGC	5 cut(s)	5, 44, 47, 454, 882
Tsp45I	GTSAC	1 cut(s)	744
TspDTI	ATGAA	3 cut(s)	844, 921, 939
TspGWI	ACGGA	1 cut(s)	478
TspRI	CASTG	3 cut(s)	585, 616, 1073
VpaK11BI	GGWCC	1 cut(s)	569
XapI	RAATTY	3 cut(s)	115, 331, 793
XmaJI	CCTAGG	1 cut(s)	70
XmnI	GAANNNNTTC	1 cut(s)	311
XspI	CTAG	2 cut(s)	71, 818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.